TCONS_00026794 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026794
Unique NameTCONS_00026794
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1335

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026794 ID=TCONS_00026794|Name=TCONS_00026794|organism=Clytia hemisphaerica|type=transcript|length=1335bp
GCGATGTTAATTTTTGCTTCAAACGAGGTTTGCTTTTTCATGTTCCAAAC
ATGAATAAAAAACtgcaaataaaaattaaaatgagtTTGCGACATGAGTT
TGGCGGAGCGTTTGATGCATTGTAAAAAGGAGTTGAATTGTTCACAGATT
GACGTGTTCATTACGTGGAATCCATTCAAACGGTCACATCGAAAGGTGGA
ACCGCAAACGTGATTATAACCGTGAAAAATGTCATGGAAAAAACGAGTGC
AACAAAAGAAGCCAGATTCACGATTGCGACAGTACTCGTCCAGTTGACAT
CCAAAGTCATACAAAACAACATCTGGCGGAAGTTCACAAAACATataaag
agaagaaaatggGTCTTTGCGGCCTTCAGAGAAGGGGATAACGTGGTAAC
CATAGCAATGGCCATGTAAGGGGCAGAACCAGGCAAACAGATAGCTTGTG
CCAGTTTTGCTGACAACAGGAAATTTCTTACTGCATTCAGTTGATGGTTT
TGATGCCTGATTCCGCTTATCAATTGGGAAAGATCTTATTTTCCGGATCT
GTTGTCCATGGTTGCTAAAATAGTAAGCCCTACCATCGCGTGGAGGGTTG
TATGTACCAGAAATAGGATTTGCACCTTCAGGTTTTACGTCATGTGCGTG
AACTTCTTTACATTTGTTGCAGCAGTAACGTATCATGTCAAAAATATCTC
TTGTGGGAGACTTGTGGACGGTCAAGGAGCTCCTGATTAAAGTAGCAATC
TCCATGTTATATGAAGTAAACAACGAAATGAGCTCATGCACTTTCGATAA
CGATGAAAGCCCAAGAAGTGCAAACTCTGAGGCTTGCAGACAAAACTCGA
CAATCTCAAAAGGTATAATTGTGTCGACGGAAGACGTTCTTGACAGTTGT
TTGTAAACATTGGAGTAAGCCTTTTTAAGATGGTCAACATCTGTTTCATT
TCTTTGAGAAGCAAAAGGTTTTAACTCGTCAGGGATGGCCTNAATAATTG
TGTCGACGGAAGATGTTCTTGACAGTTGTTTGTAAACATTGGAGTAAGCC
TTTTTAAGATGGTCAACATCTGTTTCATTTCTTTGAGAAGCAAAAGGTTT
TAACTCGTCAGGGATGGCCTCAAAGTGCTCAGTCGTATCCTGATCAACTA
ATTCTGCAAATGCTGTTCTTGCTAATTGGTTTTTCAACGGGCAGCGATCC
ATAGCACCAAGAGTCTCCGTGGGATGGTCATAACTTGGCTTCTCAATCGG
AGTGACAAACACGTTTTTAAAGTTAGTACCAATTTTGGTTCCGTCACATG
CCAATacctaagaaataaagaaattgtGAATCAGA
Run BLAST on NCBI

transcript from alignment at sc0000587:176915..178417-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026794 ID=TCONS_00026794|Name=TCONS_00026794|organism=Clytia hemisphaerica|type=transcript|length=1503bp|location=Sequence derived from alignment at sc0000587:176915..178417- (Clytia hemisphaerica)
GCGATGTTAATTTTTGCTTCAAACGAGGTTTGCTTTTTCATGTTCCAAAC
ATGAATAAAAAACTGCAAATAAAAATTAAAATGAGTTTGCGACATGAGTT
TGGCGGAGCGTTTGATGCATTGTAAAAAGGAGTTGAATTGTTCACAGATT
GACGTGTTCATTACGTGGAATCCATTCAAACGGTCACATCGAAAAGTGGA
ACCGCAAACGTGATTATAACCGTGAAAAATGTCATGGAAAAAACGAGTGC
AACAAAAGAAGCCAGATTCACGATTGCGACAGTACTTTTGAGGAATGAGA
AAAGGTACCCTTATGGCTCNCGTGTTCATTACGTGGAATCCATTCAAACG
GTCACATCGAAAGGTGGAACCGCAAACGTGATTATAACCGTGAAAAATGT
CATGGAAAAAACGAGTGCAACAAAAGAAGCCAGATTCACGATTGCGACAG
TACTCGTCCAGTTGACATCCAAAGTCATACAAAACAACATCTGGCGGAAG
TTCACAAAACATATAAAGAGAAGAAAATGGGTCTTTGCGGCCTTCAGAGA
AGGGGATAACGTGGTAACCATAGCAATGGCCATGTAAGGGGCAGAACCAG
GCAAACAGATAGCTTGTGCCAGTTTTGCTGACAACAGGAAATTTCTTACT
GCATTCAGTTGATGGTTTTGATGCCTGATTCCGCTTATCAATTGGGAAAG
ATCTTATTTTCCGGATCTGTTGTCCATGGTTGCTAAAATAGTAAGCCCTA
CCATCGCGTGGAGGGTTGTATGTACCAGAAATAGGATTTGCACCTTCAGG
TTTTACGTCATGTGCGTGAACTTCTTTACATTTGTTGCAGCAGTAACGTA
TCATGTCAAAAATATCTCTTGTGGGAGACTTGTGGACGGTCAAGGAGCTC
CTGATTAAAGTAGCAATCTCCATGTTATATGAAGTAAACAACGAAATGAG
CTCATGCACTTTCGATAACGATGAAAGCCCAAGAAGTGCAAACTCTGAGG
CTTGCAGACAAAACTCGACAATCTCAAAAGGTATAATTGTGTCGACGGAA
GACGTTCTTGACAGTTGTTTGTAAACATTGGAGTAAGCCTTTTTAAGATG
GTCAACATCTGTTTCATTTCTTTGAGAAGCAAAAGGTTTTAACTCGTCAG
GGATGGCCTNAATAATTGTGTCGACGGAAGATGTTCTTGACAGTTGTTTG
TAAACATTGGAGTAAGCCTTTTTAAGATGGTCAACATCTGTTTCATTTCT
TTGAGAAGCAAAAGGTTTTAACTCGTCAGGGATGGCCTCAAAGTGCTCAG
TCGTATCCTGATCAACTAATTCTGCAAATGCTGTTCTTGCTAATTGGTTT
TTCAACGGGCAGCGATCCATAGCACCAAGAGTCTCCGTGGGATGGTCATA
ACTTGGCTTCTCAATCGGAGTGACAAACACGTTTTTAAAGTTAGTACCAA
TTTTGGTTCCGTCACATGCCAATACCTAAGAAATAAAGAAATTGTGAATC
AGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015051XLOC_015051Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026794-exon-sc0000587-1575043694:178231..178417TCONS_00026794-exon-sc0000587-1575043694:178231..178417Clytia hemisphaericaexon
TCONS_00026794-exon-sc0000587-1575043694:176915..178062TCONS_00026794-exon-sc0000587-1575043694:176915..178062Clytia hemisphaericaexon
TCONS_00026794-exon-sc0000587-1510915933:178231..178417TCONS_00026794-exon-sc0000587-1510915933:178231..178417Clytia hemisphaericaexon
TCONS_00026794-exon-sc0000587-1510915933:176915..178062TCONS_00026794-exon-sc0000587-1510915933:176915..178062Clytia hemisphaericaexon
TCONS_00026794-exon-sc0000587-1491911889:178231..178417TCONS_00026794-exon-sc0000587-1491911889:178231..178417Clytia hemisphaericaexon
TCONS_00026794-exon-sc0000587-1491911889:176915..178062TCONS_00026794-exon-sc0000587-1491911889:176915..178062Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000587supercontigsc0000587:176915..178417 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.278378	2.45883e-06	0	0	1.19967	1.16834	0.867461	0.850154	0.653475	1.6755	1.80673	0.590812	1.38233	0.141459	0.526978	0.649649	0.275085	0.481377	0.504119	0.209682	0	0.503751	0.327118	0.0706951	2.90662	2.28695	1.41513	1.07238	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026794 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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