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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026772 ID=TCONS_00026772|Name=TCONS_00026772|organism=Clytia hemisphaerica|type=transcript|length=734bp
TCGGATTTATATCGGTAATTATCCCCGATACCCAACGGCGGGAatctaaa
aatggtagaaaagctCCGGTGactatgaaatatttttctgaaaagtaaTA
CTGGTACATCTTGAAACCCTTGAACTTTGTTAGCCAGTACCTGCTGTGCA
GCCACCTAATCAGCATCTAACAGCAAACAAATTGAAGAATTCTATCAGCA
TTCATCAATTATTTATCCAAGATCAGggGTTGGATGTTCAAGCATTGTCC
ACCATATGAAATGATAAACAACAGAAAGTGGCAGCAACTTTTCAGAAATC
GATAGAAAGTGGAGCACCAAATTATTCGTTCCCGCTGTCAAGCATGTTat
gttggaaaaaatctactGTAATCAATTACATTTTTAAGAACACAAGAGAT
GAAACATTCCAGTGGAAATGCACTTACAATTGATGACGtacaaatttttg
caaaatcgaACAAATCAGAGTAACATTTATGGCCCTAGAGGCACTTTATA
TAAAAGTCATTGAACTTTCAATTAACATTTAAGACGTGTCATTAGTCATt
aatgttattgtttttatagcatttttactgtttttaactTATCATTTTGT
ATCATTTATACCTGATGACTATGTTAAGACATCAAAATATATTattgtca
aaattaaattttgatcaaagcaccaaaatttcttcaaaagttcacaatat
tttttaccaaagaGATTAAAATGATATAAATAAG Run BLAST on NCBI transcript from alignment at sc0000587:168722..171225+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026772 ID=TCONS_00026772|Name=TCONS_00026772|organism=Clytia hemisphaerica|type=transcript|length=2504bp|location=Sequence derived from alignment at sc0000587:168722..171225+ (Clytia hemisphaerica)
TCGGATTTATATCGGTAATTATCCCCGATACCCAACGGCGGGAatctaaa
aatggtagaaaagctCCGGTGactatgaaatatttttctgaaaagtaaTA
CTGGTACATCTTGAAACCCTTGAACTTTGTTAGCCAGTACCTGCTGTGCA
GCCACCTAATCAGCATCTAACAGCAAACAAATTGAAGAATTCTATCAGCA
TTCATCAATTATTTATCCAAGATCAGGTATGATTCAGTTTCCCACTCACT
CTGTCAGTCATTGATAACATAACAAAATGATGGCAAAAATCCTTTTCAGT
CCTTTTCTAGGTGGACCCTGCCCTTCCTTCCATCTTGGGGAATGTTAGTC
ATATTAAGAACCAGCTAAAAAGTTTGTTAAAGATTAAGGGATGCTCTTTG
CTTACAAGCGAAGTAAATTATATAAAGTGCTGGAGTTTTTGGCTGAATGT
CAAATGAAATGTGCCCGTCTATTGAGTGACTACTAGCTAGCAGCACAAAT
ACTAATCTCTACAATCTATGTAAATCATTTTTTCTCTATGCAATAGCTGT
GTTGAAAGAGAAAAATCAATTACATGGAATAtatcatttataaaaaaatt
tatgttgATAATAATTAGCTCATTCTCATTCAATAGACCGTTGTAATTGC
CTTACAAGCTACATAAAAAACTATTATTTACTTGAGACTTGACTTTTAAA
GCAAAGAATCTAGCACGATATCTAAAGGGATTAATGAAAACTAAATGGTA
CTTTTTAATacagtaatttttttattataaagcaCTCTGGGCAATCTTAT
TGTATATatatgggctcttccagaaaaatttgtcgacatctgtcttctaa
tttcgacacccttctttagagataggaacaatagaaactgaggaaggtca
gaattgctgattgactttgattagcgcgatgagaggaaaaatctttagac
tatcagtgatttcgaccttcttattattcctatctataaagaaggatgtc
gaaataaGAAGacagatgtcgacattagaccaacttacggtagggGGTGG
ACGCCaggaattttcagataaaaaaagcactcggaaatccagtcaatttt
tcaaaatgcttCGGAAATTtcactcaattttttatttgaacccTTGCAAA
TTTCACATACTgtaatttgtcaaaattttgaaaaaagtatctgaaattcc
agatttttctgccaaaaatttgattttgtattggaaatccagGAGTTTTA
ATAGATGTATTGGCGAATGCGCCAGTCTTttaaataactaattactctac
atacattactttccctcagccaataaaaacatgataaattatcttgtctc
taggtaactgttgtggagtaattagttattcaaaagaggGTAGCCTAAGC
CAAAAGCTATtgcttttgtattggaaatccaggaatttcaaaaaaacatt
ttgcctcAGAATTTTGctgtcgtccacccccctgtaatGGACTTTAACTG
GAATTGAGCCCAAGAACAAATTTTAGCTGTTGGTTGTTTGCATGACATTG
TTCTCCCAAGAAATGAAATTCCAGAAGGGggctataattttttttgcaat
tttgcaagAAGTTTGatttgagttgttttttttcaagggGTTGGATGTTC
AAGCATTGTCCACCATATGAAATGATAAACAACAGAAAGTGGCAGTATCC
TATTCATTCAAAAAACGGTTTGTGGTGCCAAAGATATTTATTGAATGAGA
AATGCATGCAGCAAAGAGGGTGAAATATTGACAACAAGTATTGAGAAAGC
GAAATCTTTACTTCAGAAGAAATAACATCCACCTTTTTTTTCCGTATCTT
TACTTCAGAAGTATCATTATATATCTTCGTTTTACGTACCAATCATTTTA
AATCCTATCCCGAGCAAGGAGATAACGATGAGTGAGACAAGAAGAATAAA
GTAACAGATCAGAAAGGACACTGAGATGAgatgcttttaaaattgcattg
GTGAGATTTATAAGCACCTTTAAAAGCTTAAATAAACTTAACCATCACTT
AAGGCAACTTTTCAGAAATCGATAGAAAGTGGAGCACCAAATTATTCGTT
CCCGCTGTCAAGCATGTTatgttggaaaaaatctactGTAATCAATTACA
TTTTTAAGAACACAAGAGATGAAACATTCCAGTGGAAATGCACTTACAAT
TGATGACGtacaaatttttgcaaaatcgaACAAATCAGAGTAACATTTAT
GGCCCTAGAGGCACTTTATATAAAAGTCATTGAACTTTCAATTAACATTT
AAGACGTGTCATTAGTCATtaatgttattgtttttatagcatttttactg
tttttaactTATCATTTTGTATCATTTATACCTGATGACTATGTTAAGAC
ATCAAAATATATTattgtcaaaattaaattttgatcaaagcaccaaaatt
tcttcaaaagttcacaatattttttaccaaagaGATTAAAATGATATAAA
TAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026772-exon-sc0000587-1491911889:168722..168947 | TCONS_00026772-exon-sc0000587-1491911889:168722..168947 | Clytia hemisphaerica | exon |
| TCONS_00026772-exon-sc0000587-1510915933:168722..168947 | TCONS_00026772-exon-sc0000587-1510915933:168722..168947 | Clytia hemisphaerica | exon |
| TCONS_00026772-exon-sc0000587-1575043694:168722..168947 | TCONS_00026772-exon-sc0000587-1575043694:168722..168947 | Clytia hemisphaerica | exon |
| TCONS_00026772-exon-sc0000587-1491911889:170359..170415 | TCONS_00026772-exon-sc0000587-1491911889:170359..170415 | Clytia hemisphaerica | exon |
| TCONS_00026772-exon-sc0000587-1510915933:170359..170415 | TCONS_00026772-exon-sc0000587-1510915933:170359..170415 | Clytia hemisphaerica | exon |
| TCONS_00026772-exon-sc0000587-1575043694:170359..170415 | TCONS_00026772-exon-sc0000587-1575043694:170359..170415 | Clytia hemisphaerica | exon |
| TCONS_00026772-exon-sc0000587-1491911889:170775..171225 | TCONS_00026772-exon-sc0000587-1491911889:170775..171225 | Clytia hemisphaerica | exon |
| TCONS_00026772-exon-sc0000587-1510915933:170775..171225 | TCONS_00026772-exon-sc0000587-1510915933:170775..171225 | Clytia hemisphaerica | exon |
| TCONS_00026772-exon-sc0000587-1575043694:170775..171225 | TCONS_00026772-exon-sc0000587-1575043694:170775..171225 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000587 | supercontig | sc0000587:168722..171225 + |
Blast
The following BLAST results are available for this feature:
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