TCONS_00026716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026716
Unique NameTCONS_00026716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length268

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026716 ID=TCONS_00026716|Name=TCONS_00026716|organism=Clytia hemisphaerica|type=transcript|length=268bp
TGAATTTATTGTCTTAATGGATAAATGTGTGTACTCGCTCACCCAGGTCC
ATTTACAGTTAGTGAGTGAGGCCAATTAGGTCTCTGTTTCGCGCCATGAT
TTTTATGGGTATTATTTTCAGTATGTTTATTTTATAAGCAGTGTTTTAAT
ATGAAAGATTCATTATAATGCCTCTACTCGACGTTCACTGGTCACCTGGT
GAATGGCATTGATGGTATAGTTAAATTTGATTGGTCTCAAAATTGGGGGA
TCATTGCAGTGAGACGTG
Run BLAST on NCBI

transcript from alignment at sc0000581:78243..78510

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026716 ID=TCONS_00026716|Name=TCONS_00026716|organism=Clytia hemisphaerica|type=transcript|length=268bp|location=Sequence derived from alignment at sc0000581:78243..78510 (Clytia hemisphaerica)
CACGTCTCACTGCAATGATCCCCCAATTTTGAGACCAATCAAATTTAACT
ATACCATCAATGCCATTCACCAGGTGACCAGTGAACGTCGAGTAGAGGCA
TTATAATGAATCTTTCATATTAAAACACTGCTTATAAAATAAACATACTG
AAAATAATACCCATAAAAATCATGGCGCGAAACAGAGACCTAATTGGCCT
CACTCACTAACTGTAAATGGACCTGGGTGAGCGAGTACACACATTTATCC
ATTAAGACAATAAATTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015023XLOC_015023Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026716-exon-sc0000581-1491911889:78243..78510TCONS_00026716-exon-sc0000581-1491911889:78243..78510Clytia hemisphaericaexon
TCONS_00026716-exon-sc0000581-1510915933:78243..78510TCONS_00026716-exon-sc0000581-1510915933:78243..78510Clytia hemisphaericaexon
TCONS_00026716-exon-sc0000581-1575043694:78243..78510TCONS_00026716-exon-sc0000581-1575043694:78243..78510Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000581supercontigsc0000581:78243..78510 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
41.4061	26.16	82.5389	89.7956	16.5156	7.45762	19.4942	16.8463	46.6866	36.5235	80.9456	70.2999	393.675	487.381	187.763	156.365	168.113	179.041	329.807	269.868	148.294	180.694	158.474	165.353	83.2765	94.9984	474.999	896.091	42.7211	48.8019
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top