TCONS_00026644 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026644
Unique NameTCONS_00026644
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length478

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026644 ID=TCONS_00026644|Name=TCONS_00026644|organism=Clytia hemisphaerica|type=transcript|length=478bp
GAGAATTTATTGACAATGGATTTACATGATTATTATTGGTTATTATTGGT
CACGTGTTTAATTCCCACGGTAGCAATCGGAGATGATGAAATACCTGCTG
GTACAATAGGAACACTTCCCCGCTTCAACAGCGGAACAAAAGATCACCAC
TTCATGGACAGCAACTTGATACAGTACAAACATTACCCTATCCAAACCAT
TGGTTGGAATATAACATTCGATAGAGGAGCATATACCCTCATGCAATGTT
ATGATGATTGTTTTGCCAAAGGCTGTCGCATGTTTTATCATACACATTTA
AACAAATGCTGGGTGTTTGAATTCAAGATTCACCCATCAACGCCCGAGCA
TATTGAAGAATTACCGCGACAAGAAATTGTAGAAGCAGGGGAGAGTGTTT
TTATCTACGTTAAAcgttatttgtaaagtttataaaaCACAGCTTTTTtc
agtaaaattttactttagtgtCTTAGGG
Run BLAST on NCBI

protein sequence of TCONS_00026644-protein

>TCONS_00026644-protein ID=TCONS_00026644-protein|Name=TCONS_00026644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
ENLLTMDLHDYYWLLLVTCLIPTVAIGDDEIPAGTIGTLPRFNSGTKDHH
FMDSNLIQYKHYPIQTIGWNITFDRGAYTLMQCYDDCFAKGCRMFYHTHL
NKCWVFEFKIHPSTPEHIEELPRQEIVEAGESVFIYVKRYL
Run BLAST on NCBI

transcript from alignment at sc0000580:135053..138906-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026644 ID=TCONS_00026644|Name=TCONS_00026644|organism=Clytia hemisphaerica|type=transcript|length=3854bp|location=Sequence derived from alignment at sc0000580:135053..138906- (Clytia hemisphaerica)
GAGAATTTATTGACAATGGATTTACATGATTATTATTGGTTATTATTGGT
CACGTGTTTAATTCCCACGGTAGCAATCGGAGATGTAAGAATTGTTTTTC
TTGTTATGTATGTTTTTATCAATGCTTCAATTCTAACACATAATATACCG
TTGAAAAGATAATTCAGAAAACTACAATACCTTAAGTGGATAAATTTTGG
CGGGGATTAAATTTGGCGAATTTGGCGAATTGTGCCAAAATTCGCAAAAT
TAAATCCTCGCTAAAATTTCCAAATTCGGCAATTCTCCAACTTAAATCCC
CGCCAAATTTAACAAAAAGAGAATTATGTGAAAAATCACAACTTTTATAT
TTTTGAGTAATTTTTACCCATTTCAGTGTCACAAAATTTCCAATTCGCCA
AATGGTTAAATCCCCGCCAAATTTAACAAAAAGAGAATTATGTGAAAAAT
CACAACTTTTATATTTTTGAGTAATTTTTACCCATTTCAGTGTCACAAAA
TTTCCAATTCGCCAAATGGTTAAATCCCCGCCAAAAATCCTATTTTGGCC
AATCGCCAAATTAAATCCACGCCAAAATTTATCCAGTTAAGGTATCTTGT
CGTTAACCTGATAAAAGAAAAAAATCATCTTAACCCCTAGTAATTTTAGA
ATAACTTTAACTCATCGAAAATTAAATCAGATCCCTGGAAAAGTTGAAAA
ACTTTCCTTAAATCACTTAGAAATGTTCGTCTACCCTCTTGTATGGATGA
AAACTAATATGACCCATTACGCGTCCGTTGTTGATATTTTGACCCTAAGT
TAAGCATATCTATACCGGTAAAATGTGTTCCTGGAATGAAAAGAAAGAAA
GCTACAATAATTAACTTGGGTTAAGAGCACGAAATTTCACAATAAAAAAT
TATTTTATTTTTCTGTTTAGGATGAAATACCTGCTGGTACAATAGGAACA
CTTCCCCGCTTCAACAGCGGAACAAAAGGTAGTTTTTCACTACAGTATAC
AATCATGGTCGTAATATTTGAGAAAAAAGGGAAATCCACCGGGGTGTTTT
GAAACCACAATCGATTTGTAAGTGCTCTAAAGTAGGTTTGAAGGGTAAAG
TTTTAACTCTGAGTTTTAACACTAGACTTAAGACTTACGACCTTAGGATC
TCAGGATCCAAAAGTTCAAAAATAGTCCAATAAGGCTCAGAATATAGCCT
GGAAGTCTGCCAACCCCTCCCAAATTGAAATATTCGATTAAGTTAAAGAG
ACTTAAAGTTAAAATCGACTTTCTCGCCAGAACTTTAAATCTTGAAAAAC
GTTAAAATAACCGGAATTCTCATTCTATTTCGACCATGATTGTAGTCTCC
ATAATTCGAGACCTCTACAACTCGAATGTCATCTTAACTCAAGCAAGTTT
AATGGTCCCTACGGTTAAGGCCATAGAAACCATACTCCTTAACTTGAACA
AATTTTTAAAAGTTAAGGAATCTGACTACAGTCAAAAAATTTGTTTAGGG
ATTTGAAGATAAAACCTTTGTTTTGGGTTCCTTGGTACTTTTAACCAAAA
ATTGCTTTTACAAGTTGTTTGGAAATTTATTCTATCGAGAGTAAATAAGA
ATTTAACTACAAAAATGACGTTATGTACTTTAAAATAACGTTAATCAAAT
GTTATATTACACTCTTATACAAAAAATGTTAAGCTTCAATGAGCAATTAA
CGTTTTTCTTTCGAGTTTTTTTTCAATTATCCGCAAAAAAATGAACTAAT
TGAATATTCGGAAACATTTTCTAAATTGATGTATCAAAAGTTATGATGAC
TCTTTTTGAACGAAAAATTGGGATGAAGAATTGGTCAAAGACTGCTGATT
TTCAAGATTTTGAGACGAAGAAGCTTTAACAAAAATTTTCCGAAAATCTT
TTTTTAGTTCGGTTAACGACACACCTTCTAACGCAAAAATCTTTTCGAAA
TGTTTTTTCTTCGCCGAAAATAAGGTCTTCAAAGTTGAAATACTGATCTT
CGCAAAAGTCTTCATTTTCTTCTTCATCAAAGTTTTTCATTGTGATTCTT
AAATTTTCAGACTAAAGGATGGTTGGTCTAACAGAAAATGTATAACATAC
CACAGCTTTGTTTGCTACATCAAGTAGAAATTTATATTTTGTACGTGGCA
AATATTAAAAACTCACTATGGTCGGAGCCCTTAAAGAGACTCCAATATGC
AAAAAATAGCGTAACAAAGTCACGCATCACGCCTTTTCCTTCCCCAGGTT
CCAGAAAAGGCACTTATCCGTACCATTCACTTGCCTAGATAGCCCTTTCC
GATAAAAGGCAAATCTTTTTGGACGGTGAGATTACTACCTTGAGGGAAAT
AATTTTCGCGGTAACTGATTTTCACGGGAACTAATTTTCGCGTTTTTTGG
GTGTCAATCGCAAAAATTAGTTTCGCAAAAATTAGTCTCATACCCTTGCA
ACGCGAAAATTAGTTCCACAAAAATTAGTTAAAGTCTGTGTCAATATAAA
TTGCAGCGGAGACAAAAAAGGCTGTAACTTTTATAAGATAGAATTCAAAT
TAGAAAACGGTTTTGTGCTCGTTTAAAAGATAATCCAGAGTGGAATATTA
TCAAAAAAGAAAAAACTTTAAAAAATAGAAAAATGAAAATGAAAATGAAG
AAGAAAAAAATCAACTACTTATAAAGATCCTATGATCTTCATTTTTATTT
CAGAGATTCTTCAATCTTAGAAGGTCATAAATGGGAAAAAAATTCAAAAA
ATATCTATTCAGTCAAAAAATACAGCTTAAAACTTTGCCTTGGTCGACTT
AAAAATAGACTTTTTTTTGTTGCTTTTTGGTGGATCTTTTTCACATGTAC
GTAAAATTTTACTTAAGACCTTGAAGAGTGTTTTAATCTGAAAAAGCTAA
TTAAAATTCAGAAAACGCGTGTCAAACTAAAAATCAAAAACATTCAAACA
GAGCGAGAAATCATTTTCACCAACTTAACGCAACAAGGACAAAAGTTGAA
AACCAACAAAACAAAACAGCGACAAACCTTAAAACCAACAACAATAACAA
AATAAAAACAAAGGCCTTATGTAGAGTTTGCTTACGTTCAAAAAGTTTTG
AACGGAAGGAAAAGTATAAAATACTTGAACGGAAGGAAAAGTCACTGGGA
CAAAAACTGTACGTAAGGGCGGGGAAATTCCCAAAAGACAACCTTAAGAA
CGATTTTCTGTAAGGTCTAAAGTAAGATTTTACGTACATGTGAAAAAAGC
TTTAGTGATAAACTTTCGACTATATCTTTTGATTGAAAATTTTTTTTTAA
TTTTTTTGACATTGCTGATGTTCAAAGATCAAAGAGTCACTCGTGTGGAA
ATGATGATTATTGCACAATTTGTCTTTACAACAAGCACAAAACTGCTATC
TAATTCGAATTTTATATCAAAAGTTAGTCTTTTTTGTCTCCGCTGCAAAT
TATATTAAGAGAGACTTTACCACAGTAATTAGTTCCTCTAAGGTACTTTA
CTTATTTATACCTTTAAGATCACCACTTCATGGACAGCAACTTGATACAG
TACAAACATTACCCTATCCAAACCATTGGTTGGAATATAACATTCGATAG
AGGAGCATATACCCTCATGCAATGTTATGATGATTGTTTTGCCAAAGGCT
GTCGCATGTTTTATCATACACATTTAAACAAATGCTGGGTGTTTGAATTC
AAGATTCACCCATCAACGCCCGAGCATATTGAAGAATTACCGCGACAAGA
AATTGTAGAAGCAGGGGAGAGTGTTTTTATCTACGTTAAACGTTATTTGT
AAAGTTTATAAAACACAGCTTTTTTCAGTAAAATTTTACTTTAGTGTCTT
AGGG

Coding sequence (CDS) from alignment at sc0000580:135053..138906-

>TCONS_00026644 ID=TCONS_00026644|Name=TCONS_00026644|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at sc0000580:135053..138906- (Clytia hemisphaerica)
ATCACCACTTCATGGACAGCAACTTGATACAGTACAAACATTACCCTATC
CAAACCATTGGTTGGAATATAACATTCGATAGAGGAGCATATACCCTCAT
GCAATGTTATGATGATTGTTTTGCCAAAGGCTGTCGCATGTTTTATCATA
CACATTTAAACAAATGCTGGGTGTTTGAATTCAAGATTCACCCATCAACG
CCCGAGCATATTGAAGAATTACCGCGACAAGAAATTGTAGAAGCAGGGGA
GAGTGTTTTTATCTACGTTAAACGTTATTTGTAAGATGAAATACCTGCTG
GTACAATAGGAACACTTCCCCGCTTCAACAGCGGAACAAAAGGAGAATTT
ATTGACAATGGATTTACATGATTATTATTGGTTATTATTGGTCACGTGTT
TAATTCCCACGGTAGCAATCGGAGATATCACCACTTCATGGACAGCAACT
TGATACAGTACAAACATTACCCTATCCAAACCATTGGTTGGAATATAACA
TTCGATAGAGGAGCATATACCCTCATGCAATGTTATGATGATTGTTTTGC
CAAAGGCTGTCGCATGTTTTATCATACACATTTAAACAAATGCTGGGTGT
TTGAATTCAAGATTCACCCATCAACGCCCGAGCATATTGAAGAATTACCG
CGACAAGAAATTGTAGAAGCAGGGGAGAGTGTTTTTATCTACGTTAAACG
TTATTTGTAAGATGAAATACCTGCTGGTACAATAGGAACACTTCCCCGCT
TCAACAGCGGAACAAAAGGAGAATTTATTGACAATGGATTTACATGATTA
TTATTGGTTATTATTGGTCACGTGTTTAATTCCCACGGTAGCAATCGGAG
ATATCACCACTTCATGGACAGCAACTTGATACAGTACAAACATTACCCTA
TCCAAACCATTGGTTGGAATATAACATTCGATAGAGGAGCATATACCCTC
ATGCAATGTTATGATGATTGTTTTGCCAAAGGCTGTCGCATGTTTTATCA
TACACATTTAAACAAATGCTGGGTGTTTGAATTCAAGATTCACCCATCAA
CGCCCGAGCATATTGAAGAATTACCGCGACAAGAAATTGTAGAAGCAGGG
GAGAGTGTTTTTATCTACGTTAAACGTTATTTGTAAGATGAAATACCTGC
TGGTACAATAGGAACACTTCCCCGCTTCAACAGCGGAACAAAAGGAGAAT
TTATTGACAATGGATTTACATGATTATTATTGGTTATTATTGGTCACGTG
TTTAATTCCCACGGTAGCAATCGGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014996XLOC_014996Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026644-proteinTCONS_00026644-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026644-exon-sc0000580-1575043694:138823..138906TCONS_00026644-exon-sc0000580-1575043694:138823..138906Clytia hemisphaericaexon
TCONS_00026644-exon-sc0000580-1575043694:137929..137986TCONS_00026644-exon-sc0000580-1575043694:137929..137986Clytia hemisphaericaexon
TCONS_00026644-exon-sc0000580-1575043694:135053..135388TCONS_00026644-exon-sc0000580-1575043694:135053..135388Clytia hemisphaericaexon
TCONS_00026644-exon-sc0000580-1510915933:138823..138906TCONS_00026644-exon-sc0000580-1510915933:138823..138906Clytia hemisphaericaexon
TCONS_00026644-exon-sc0000580-1510915933:137929..137986TCONS_00026644-exon-sc0000580-1510915933:137929..137986Clytia hemisphaericaexon
TCONS_00026644-exon-sc0000580-1510915933:135053..135388TCONS_00026644-exon-sc0000580-1510915933:135053..135388Clytia hemisphaericaexon
TCONS_00026644-exon-sc0000580-1491911889:138823..138906TCONS_00026644-exon-sc0000580-1491911889:138823..138906Clytia hemisphaericaexon
TCONS_00026644-exon-sc0000580-1491911889:137929..137986TCONS_00026644-exon-sc0000580-1491911889:137929..137986Clytia hemisphaericaexon
TCONS_00026644-exon-sc0000580-1491911889:135053..135388TCONS_00026644-exon-sc0000580-1491911889:135053..135388Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000580supercontigsc0000580:135053..138906 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.131888	0	0.14933	0	0.177858	0.140546	0.508687	0.158742	0.666834	0.137664	0	3.16211	0	0.0910921	0	0	0	0.101479	0.280399	0.440126	0.637582	0.186594	0.604879	0.137481	0.424805	1.64289	0.180844	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026644 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top