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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026641 ID=TCONS_00026641|Name=TCONS_00026641|organism=Clytia hemisphaerica|type=transcript|length=1404bp TTTGAGTTAATTTTCATtattcaataaaaatttcaatttaaaataaagCT TTTAAACAAAACAGAATGTCCCCAAACGATTAAAAAGAACCGCTCCTTTT ACTGTTCAAACCCACCTGTATGTAAGTTATTACGAAAAAATTATGTTGCA TTTTCATTGCTAAAATTAATTACCGAACATTTGGAAGAAATATAAATTTG ATTGATTGGAAATGTAAATATTAAGTCAACTGTTATCAAGTTATATGCCA ATGACATTTCATTATTGATATAAAATTGGATATAAATTGTGGATGAAATT TCTCAAGGAATCATCTGCGTTTTTAACGAACGATGTTACACTTGATTTTC TTGCTCGTACTAACTGCTGTTAAAGGTCAACAATGGCCGGAAGACAGTTC AGCCAGGTGTACGCATACATCAAAACAGACAGCTATGTATGGTCGATTTG CCTTCCAACCGCCCCTCAGTATTAAACCAATGACCTCATTTGAAGTTGAC ATTAAATGGGACGAATTGAAATTCAACCCCATCTCCAACCCCCATAAGAG AGGAGGTGTTTATATCTCTTATACCACGCAAGTTACAGGTGGACCACCTG GATATTTTGGTATTCAAATTGTTAACAATGGAGGTAACTTCATTTTCTCG TTCTGGGATGGCGATCGCTTCACAGGTAAAGGACACGACAAAGAACCAAA GAAATCATCTAAACTTGTTTGGCCCATCAATATGAAAAATTGTCAACGAA ATTGCCAAGATTGTGGTCTTCCACAATTAAGAGAGTTGGCGAAAAAAGGG TTTACAACTGGTACCAAATGTTTTGTTAAATATCCAAATATGAGGGTTGG TGATCGATACAAGATAGGTTTTCGTCGAAAATCGAAAGAATTTACAATCA ACACCGCAGATTACGGTGGTATGCCAAAATCACATTCAATTGTCGACGAG TATGACAGAGAAGTCACTGGTGGATTATGGGAAATGTATGTAGAAGATGT CGATCGTGAAAGCAGGCATTTGGTGGGACAGATGCTTATGGAAGGAGATG GCAATGGGATGAAATATATCAGAACTTTTGATGAAATGTTGGGATGTGTC AAGTGTAATGCTATCCAACATAAAGATACAAGATATGGGCCATACATTGG AGGTGACGGTATTCCAGTAAGAAAACCACTCAAAATGGAAGGACTGACAA TAACTGGTCATACCACGTGTAAAAAGTCCTTTATCAGTGGAGAGAAAGAT GATATGAGTATTTCTTTTGAAGCAGGTCCATTCACAACAAAAACATTCCC TCAGGACggtaaaaaataccaaaaggtATGGTGAAAGTAACTAAAAATTT CAACTGtatattatatcaaaatttctAATGAGAATAAAAATAGCACACTC GATG Run BLAST on NCBI transcript from alignment at sc0000580:109510..116857- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026641 ID=TCONS_00026641|Name=TCONS_00026641|organism=Clytia hemisphaerica|type=transcript|length=7348bp|location=Sequence derived from alignment at sc0000580:109510..116857- (Clytia hemisphaerica) TTTGAGTTAATTTTCATTATTCAATAAAAATTTCAATTTAAAATAAAGCT
TTTAAACAAAACAGAATGTCCCCAAACGATTAAAAAGAACCGCTCCTTTT
ACTGTTCAAACCCACCTGTATGTAAGTTATTACGAAAAAATTATGTTGCA
TTTTCATTGCTAAAATTAATTACCGAACATTTGGAAGAAATATAAATTTG
ATTGATTGGAAATGTAAATATTAAGTCAACTGTTATCAAGTTATATGCCA
ATGACATTTCATTATTGATATAAAATTGGATATAAATTGTGGATGAAATT
TCTCAAGGAATCATCTGCGTTTTTAACGAACGGTAAGTCGCGTTTTCTTA
TATAAGAACTTCCAAGATTTTTGAAGCCTTCGGATGTTCTTAATTTTTCG
AGTTTTAAGCCTCCTTATCATGGTCTCATTTTCACCCCTTTCTGAGTATT
TTTAACCATTTTCCTGAGAAATCGGGTATGTTAGAGCCTGCAAAGCTTTA
AAATGTTCTTAATTTGTTCTTAATCTTTTGGCTGTCAAAGCCTTATCTTA
TTGGCATTATCTAAATGGCATAAAACCTATTGGCTATAAAACCTTTTTAA
CAACTCAATCTAACTATGTAAAGGTATTACACATTATTAGTCACAGTTAC
ACGTTTTTTTTTATATAAGGAACACGTTTATAAGGAACTCGAGGCTGAAA
ATGGTCCAAAAAATAAGGAATTGTTTAGGAACTGCTCAGGCTGAGAATAA
GAAAACAAGTTTTAAGGAACAGTAAGGGCCAGTAAGAGCTGGTTATCCAA
ACTTAGCAGCTATATGTAAATAAGGAACTCGATAAGGAACTTTGAGGCTG
AATTTTTCTGTAAAAATAAGGAACTCCAGGCTCAGAGCAAAGTTAAGGTT
CCTTATAAAAAAAAAACGTGTATGCCCAAACCGAGAATTGAAAATTGGCC
AATCGATTGTGATTTCGGGAATCATATTCTCGAGGAGTAGTCCCTAGGCT
GCTGGCATCCAATAAAGGATTCGTGCTCCTTTTATACTATCTGGGGTTTT
GTAGAGGTCTGCGATTCAGACTAAGGAGTCCCAAATGTTAAAGTTTTTAT
CAGAACATAAACGTCTTTTCAGGAAGAAGACACAACAAGAACTACTCTTA
CAAGAAAAAAAAGATAGTATCCAGCGTAAAAAATGCTCTAAAAAATAATA
GCGCATATTACGCATACTATGGTCACGACAGTGAACTCATTAAATATTTA
ACACCGAAATCACAATCAATTGGCTAATTTTCAATTCTCGGTTTGGGCAC
AACTGTGACCTCAAACCTAGTAAAATGAGGGAGTGGTCAGGGTTGAAGAG
GGCCAAAGTTATACTGCATGTAAATCTTGATATAATTTTTGTTGTTATTT
TACAGAAGATGTTACACTTGATTTTCTTGCTCGTACTAACTGCTGTTAAA
GGTGAGCTAGATTATTTCAGATACGTTTAAAATAGTAAACCTCGGGAAAA
TTAATGCGTGTCCAAACTTTCGTTAATTCTTCGGACCCATCATCACCCCT
CCTAGCATAATAAATTATACCTTTAAAGAAGCACATTACGATGTAGAACA
TGAAAATCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTTAGG
TTTTGCCAATTTTGCGAAAAACCGCAAAAACCAAAAAATGCTGACGTCAG
CAAAACTTGTTTTTTAAATAACTCCAGTTTGGCTAATGGTATAAACGTGA
AATTTGGACCAAAATTGCACATTATTAAAAAGATAATTTTGAAAAAAAAT
GTTTTTGAAATTTTGCTGATGTCTGCACTTTATTGCATATTTTCGTATTT
TGCTGATTTCTGCTGACGTCAGCAAAATTTGAAAAAAATGATTATGTAAA
AATGTTTTTATTACTGATATGCAACTTTGGTCCAAATTTCANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCG
TAATGTGCTTCTTTAAAGGTATAATTTATTATGCTAGGAGGGGTGATGAT
GGGTCCGAAAAATTAACGAAAATTTGGACACGCATTAATTTACCCGAGAC
GAGTCACCTAAAATCTGCTTCAAATTCATTATTATATATCTAGACTAAAA
ACCTTGTAAAAACTTTCTCCCGGGATGAGCTGGAGTTTTTACAAGATAAC
TCACTAATTGGTCATTTGAAGTAATAGAGATGACGCGAAATGTTTTATTA
CAGGTTAATGACCAATCAAATCAAGTGAGAGCTTATAAAAACTCCAATTT
GTCCCGTAAAAACACATGTGAATTCATAAAATGTCGATTAGCTGTTCCAT
AGGAAAAGTTCCTTAAAAGATGAAAAAAGGATGAACAGAATAATTTTTAA
TTCTACAAATACATGAAACTTGAAACACAAATATTAAGAATCCGATTTTT
CACTATAGGTCAACAATGGCCGGAAGACAGTTCAGCCAGGTGTACGCATA
CATCAAAACAGACAGCTATGTATGGTCGATTTGCCTTCCAACCGCCCCTC
AGTATTAAACCAATGACCTCATTTGAAGTTGACATTAAATGGGACGAATT
GAAATTCAACCCCATCTCCAACCCCCATAAGAGAGGAGGTGTTTATATCT
CTTATACCACGCAAGTTACAGGTGGACCACCTGGATATTTTGGTATTCAA
ATTGTTAACAATGGAGGTAAAGATATTTCTCTTTTAATTGCGAATCGCAT
TGAACGATATTGCTAAAAAACGAAATTTCTTGCTCTAATCTGATTCACAA
GTATCGACTTTCTGCATGAAAAACTCCCAAATTCTAAAGTAAATTATCCT
AAATTATTTTCCAACGGCCAAATTAAATTCTGGAAAATTCCCTTTTTGTA
CGGGGAGATGAAAAGTTATTGACACGGATGTGGGAAGAAATATTTTGTAC
AAGAAAACTGCCCTTCCAGTAAAAAAAACAACAATCTGCCAACGAGGACA
TCAGCATTACTACACCCCTGTCTCGCGGCCCGTTTGAATATTTTCACTGA
ATCTGGATGGTTTTGGAGTGTCATTTTTATCGCGTATTTTGTATGGGAAT
AAAATTGTAGGTCAATTTCCCAGTGGGGTTGAAATTTTAGGGTATTTTTT
TCTATCAAGGAGGAATATTACTATGTAGAGAGAGAATAAAAATAATTGTA
TCTTTTCCAGGTAACTTCATTTTCTCGTTCTGGGATGGCGATCGCTTCAC
AGGTAAAGGACACGACAAAGAACCAAAGAAATCATCTAAACTTGTTTGGC
CCATCAATATGAAAAATTGTCAACGAAATTGCCAAGATTGTGGTCTTCCA
CAATTAAGAGAGTTGGCGAAAAAAGGGTTTACAACTGGTACCAAATGTTT
TGTTAAATATCCAAATATGAGGGTAAGTTAAAAATTATTACAGTTGAGTC
TCCATAATTCGAACACGCAGGGGGGGGGGCACAAATTTGTTCGTGTTAAG
GAAATTACGAGTTATAGAGTACTCTTGTCTCCCGAATAGACGCCCCCCCG
CTAATTGCTAAGAGAAAAATCCATCCCCCCGCTCTTATTAACGAGTTTAT
GTATGTGTGTTTTTCAGCGACGGAGACGGTAAGGTTCTAATTTGAGTAGA
TCACAACCAGCTGAGGACGACGGTAAATCAGCACTTTTACCGTCCTCGAT
TTTGCGGGGCGGAATTGCGGGTTTTTCCAAATCGCTTCAGTCACTCTATC
GTCCTCAAAAGTGCAAATACATAAACTCGGTATTAAGATCCCATCCCTGC
TAATTAAATTTGAATAAGTCAATATTTTATTACAGAGTAGATAGACCTTA
AACTTGTTAAAATTTTCCTTTTTGTTAGTATTGGTTCTTACAGTATAAGT
TTCTTTTTTATTGCTGAAATTGATATCAGTTAAAAAAAATTCGGTCTTCA
AATTACCCCCCCCCCTCTTATTCCATCCCCCCCCGGAGCTATTTGAGTTA
TAGAGATTCAAGTTATGGAGGTTCGAGTTAAAGAGACTCCATGGAGTCTC
AGTGGATCTCCAATGTAAGTTTTCGTCGGATAGTAAAATTGGAACAGACA
AATATTTCAAGTTTTCCTTTTACTCTACGGGCCCAAATAAACGTCTCCCC
GGTTATTAATTTTTAAAAATATTTTCAGATATCAAAAGCTGAATTGCCCT
AAATACCTAATAAGGGGGGGGGGTTAGAGGTACAATTTCCAACCCCCAGC
TACTAAGTCTTTCTACAATAAAAGGAACGTTATAGTCCCAAAAACTGATG
GAAAAAAAGGGAAATTCCCCACTTTCTGCATTAATTTATGCAAAATTAAA
CAACTTTTTGGCCACAATTAGGCCAATAACTTTTGATCTAGAGAAGTTGG
GAAATACATACATACATTTATTTGCTCAGTTTGAAGAGCTCTATCATGTG
ATATAGGTCTTTTTTTAATTTGAAGACCCTCCAAAAATCATGAATTTCCA
GGCCTTGCAATTTTGCCTGGAAACGCAAAAAATCCCTAATTACTCGTTAC
TTGCACGAAAATATCGTGGAAACTTTTTGATTTTGGAATCTACATATGCT
AATTCGTGAGTTTCCACCAAAAAAAGTTAGTTCTAAGATGTGTGTCACGA
AATGAAACATTTATCGATCTCAGCAGCGGGACTATTATGTTACACTAATT
TTTTACTTAATACCGGCACTAGAAACCTAGGAGCACCGGTTCTCCGAATC
TCTCAACACTATTATTTTCTTTAGGTTGGTGATCGATACAAGATAGGTTT
TCGTCGAAAATCGAAAGAATTTACAATCAACACCGCAGATTACGGTGGTA
TGCCAAAATCACATTCAATTGTCGACGAGTATGACAGAGAAGTCACTGGT
TAGTATTTTCTAGCTTACACAGCATTTTTAAACTAGTTGACTCTCTCTAA
TTCGATCTTCAGAGGGCCAAAAACATTTTCTTCGAATTAAAGGAAAAATT
TGGATTGCGGGGAGTATCCTATACAACTTTCCAGCTCTGGGAACCAATAT
TTTAGTTCGAATCTAATAGAGGTTTGAATGACAGAGAGACAGAGACACGC
CATTCGACCCCCGCCACGCAAACACAAATTTGGGGAATTCTTTTTTGTTA
ATTCACATAACATCATCGACAAATATGACAAAAAAGTCATACTGATTAGT
TATCTTTCATGAGAATTTTTGTGTGCCTTTGGAACCACGTCACTCAGTTC
AGTGACAGTTTGCCCGACGGGTAGGTAGGTCTTTGTTCCATTGAGTTCAA
ATCACCGAAATGACTAAAATTGAAACTCTTGGATGGNATTTCATCTCAGA
ATCTAAGTTTCGGTGAAGCACACTTTTCCACCAAAATCGACACTCTGGCC
ACAACAGGTAAAATAAGTGGTCCCGTTGCCCTAAAATTGGCCCTGCACTT
ACCCTAAGCCTGTAAATNTATACTATCCCAAGATTCAAAGAAAACCCATT
GCCAGAAAACAAAGAAAGTGCTAGATTATATTCGTAATAAAAAAGCAGCG
CAAATCTTAACCTTTAGACACCGCTGTTTTTAAAAACAGCGCGCGCTGCT
GCCGCTGTTTTTTTCATGGNCCAGAATAGTGGAAAAACTGAGGCAAAACA
GCCCTGAGTTGTTGGAGCTAGAGATAGGCATGTATGTCAGGAAATACCCC
CTAAAACCCCTTAGANCTGCTAAATTTTACAGAATAGAAAAATTCAAACT
GGTCTTTATTTTATTAAACTTTGAAAGGACCCAAGTATCAAAACGTACGT
GGTACGTCTCTCGGCCTGTATATATGACGTACGTGGTACGTCTCTCGGCG
GCTAAAGGTTAAGGCTTCACTTTTTCTTGCTTGGTAGAAATTTCCCTCTG
GTAATTCATGCTATAAGCTCAATGCCTAGATGACATCGGTTTCGTAACGG
GTTCAGTAGTGGTATCGAAACCGGCTTTGTTAATCTTTCTGGCAGCTTTG
GTAAAACGACCTTGAACGACCCGAACCAAGGCCCCATCTTTTATGCAACC
TTTAAATTAGTTTTTGATGCACGAGCTGATGTAGTAAAAATATTATCTCC
TTAAAACACAGGTGGATTATGGGAAATGTATGTAGAAGATGTCGATCGTG
AAAGCAGGCATTTGGTGGGACAGATGCTTATGGAAGGAGATGGCAATGGG
ATGAAATATATCAGAACTTTTGATGAAATGTTGGGATGTGTCAAGTGTAA
TGCTATCCAACATAAAGATACAAGGTCAGTGTTTTTAGCCGAGATCTTAA
TTAAAGGTTCTTAAACTTTAACAAGGACGCCGTTTTCAGTTTCTTGAAAC
GTTCGTAAGGACAGCTTAAATGGATTAACTTTGGCGTGGATTTAATTTTG
CACTTGGCCAAAATGACATTTTTAGCGGGGATTTAATTTGGCAAATGACT
AATTCTCTTAAAAAAATTTTGAATTTCACGAATTTTTAAATTTTCGTTTT
AATCCTTATTTAAATTGTTTCTATTGTTTCATCGTGGATTTGATCCTTAT
TTTAATTGTTTCTATTGTTTCATCGTGGATTAGCTTAGTGTACGTGCTTT
GTTTGTGTAATGCTTACATTTTATTATAGTGGTGGTTCTGAGAGGGGTTC
AAAATGTATGACTTTTCATATCCTTATAAGGAGTATAGAAGTACGGTAAA
AGAAACCCTCCTTCAGATCCGTCATTGTATTACATTCATGACCCTTTTTA
AATATCCTCAATTATCTTATTTGTAGATATGGGCCATACATTGGAGGTGA
CGGTATTCCAGTAAGAAAACCACTCAAAATGGAAGGACTGACAATAACTG
GTCATACCACGTGTAAAAAGTCCTTTATCAGTGGAGAGAAAGATGATATG
AGTATTTCTTTTGAAGCAGGTCCATTCACAACAAAAACATTCCCTCAGGA
CGGTAAAAAATACCAAAAGGTATGGTGAAAGTAACTAAAAATTTCAACTG
TATATTATATCAAAATTTCTAATGAGAATAAAAATAGCACACTCGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00026641-exon-sc0000580-1575043694:116526..116857 | TCONS_00026641-exon-sc0000580-1575043694:116526..116857 | Clytia hemisphaerica | exon |
| TCONS_00026641-exon-sc0000580-1575043694:115407..115449 | TCONS_00026641-exon-sc0000580-1575043694:115407..115449 | Clytia hemisphaerica | exon |
| TCONS_00026641-exon-sc0000580-1575043694:113842..114099 | TCONS_00026641-exon-sc0000580-1575043694:113842..114099 | Clytia hemisphaerica | exon |
| TCONS_00026641-exon-sc0000580-1575043694:113136..113347 | TCONS_00026641-exon-sc0000580-1575043694:113136..113347 | Clytia hemisphaerica | exon |
| TCONS_00026641-exon-sc0000580-1575043694:111660..111783 | TCONS_00026641-exon-sc0000580-1575043694:111660..111783 | Clytia hemisphaerica | exon |
| TCONS_00026641-exon-sc0000580-1575043694:110284..110446 | TCONS_00026641-exon-sc0000580-1575043694:110284..110446 | Clytia hemisphaerica | exon |
| TCONS_00026641-exon-sc0000580-1575043694:109510..109781 | TCONS_00026641-exon-sc0000580-1575043694:109510..109781 | Clytia hemisphaerica | exon |
| TCONS_00026641-exon-sc0000580-1510915933:116526..116857 | TCONS_00026641-exon-sc0000580-1510915933:116526..116857 | Clytia hemisphaerica | exon |
| TCONS_00026641-exon-sc0000580-1510915933:115407..115449 | TCONS_00026641-exon-sc0000580-1510915933:115407..115449 | Clytia hemisphaerica | exon |
| TCONS_00026641-exon-sc0000580-1510915933:113842..114099 | TCONS_00026641-exon-sc0000580-1510915933:113842..114099 | Clytia hemisphaerica | exon |
| TCONS_00026641-exon-sc0000580-1510915933:113136..113347 | TCONS_00026641-exon-sc0000580-1510915933:113136..113347 | Clytia hemisphaerica | exon |
| TCONS_00026641-exon-sc0000580-1510915933:111660..111783 | TCONS_00026641-exon-sc0000580-1510915933:111660..111783 | Clytia hemisphaerica | exon |
| TCONS_00026641-exon-sc0000580-1510915933:110284..110446 | TCONS_00026641-exon-sc0000580-1510915933:110284..110446 | Clytia hemisphaerica | exon |
| TCONS_00026641-exon-sc0000580-1510915933:109510..109781 | TCONS_00026641-exon-sc0000580-1510915933:109510..109781 | Clytia hemisphaerica | exon |
| TCONS_00026641-exon-sc0000580-1491911889:116526..116857 | TCONS_00026641-exon-sc0000580-1491911889:116526..116857 | Clytia hemisphaerica | exon |
| TCONS_00026641-exon-sc0000580-1491911889:115407..115449 | TCONS_00026641-exon-sc0000580-1491911889:115407..115449 | Clytia hemisphaerica | exon |
| TCONS_00026641-exon-sc0000580-1491911889:113842..114099 | TCONS_00026641-exon-sc0000580-1491911889:113842..114099 | Clytia hemisphaerica | exon |
| TCONS_00026641-exon-sc0000580-1491911889:113136..113347 | TCONS_00026641-exon-sc0000580-1491911889:113136..113347 | Clytia hemisphaerica | exon |
| TCONS_00026641-exon-sc0000580-1491911889:111660..111783 | TCONS_00026641-exon-sc0000580-1491911889:111660..111783 | Clytia hemisphaerica | exon |
| TCONS_00026641-exon-sc0000580-1491911889:110284..110446 | TCONS_00026641-exon-sc0000580-1491911889:110284..110446 | Clytia hemisphaerica | exon |
| TCONS_00026641-exon-sc0000580-1491911889:109510..109781 | TCONS_00026641-exon-sc0000580-1491911889:109510..109781 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000580 | supercontig | sc0000580:109510..116857 - |
Blast
The following BLAST results are available for this feature:
|