TCONS_00026641 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026641
Unique NameTCONS_00026641
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026641 ID=TCONS_00026641|Name=TCONS_00026641|organism=Clytia hemisphaerica|type=transcript|length=1404bp
TTTGAGTTAATTTTCATtattcaataaaaatttcaatttaaaataaagCT
TTTAAACAAAACAGAATGTCCCCAAACGATTAAAAAGAACCGCTCCTTTT
ACTGTTCAAACCCACCTGTATGTAAGTTATTACGAAAAAATTATGTTGCA
TTTTCATTGCTAAAATTAATTACCGAACATTTGGAAGAAATATAAATTTG
ATTGATTGGAAATGTAAATATTAAGTCAACTGTTATCAAGTTATATGCCA
ATGACATTTCATTATTGATATAAAATTGGATATAAATTGTGGATGAAATT
TCTCAAGGAATCATCTGCGTTTTTAACGAACGATGTTACACTTGATTTTC
TTGCTCGTACTAACTGCTGTTAAAGGTCAACAATGGCCGGAAGACAGTTC
AGCCAGGTGTACGCATACATCAAAACAGACAGCTATGTATGGTCGATTTG
CCTTCCAACCGCCCCTCAGTATTAAACCAATGACCTCATTTGAAGTTGAC
ATTAAATGGGACGAATTGAAATTCAACCCCATCTCCAACCCCCATAAGAG
AGGAGGTGTTTATATCTCTTATACCACGCAAGTTACAGGTGGACCACCTG
GATATTTTGGTATTCAAATTGTTAACAATGGAGGTAACTTCATTTTCTCG
TTCTGGGATGGCGATCGCTTCACAGGTAAAGGACACGACAAAGAACCAAA
GAAATCATCTAAACTTGTTTGGCCCATCAATATGAAAAATTGTCAACGAA
ATTGCCAAGATTGTGGTCTTCCACAATTAAGAGAGTTGGCGAAAAAAGGG
TTTACAACTGGTACCAAATGTTTTGTTAAATATCCAAATATGAGGGTTGG
TGATCGATACAAGATAGGTTTTCGTCGAAAATCGAAAGAATTTACAATCA
ACACCGCAGATTACGGTGGTATGCCAAAATCACATTCAATTGTCGACGAG
TATGACAGAGAAGTCACTGGTGGATTATGGGAAATGTATGTAGAAGATGT
CGATCGTGAAAGCAGGCATTTGGTGGGACAGATGCTTATGGAAGGAGATG
GCAATGGGATGAAATATATCAGAACTTTTGATGAAATGTTGGGATGTGTC
AAGTGTAATGCTATCCAACATAAAGATACAAGATATGGGCCATACATTGG
AGGTGACGGTATTCCAGTAAGAAAACCACTCAAAATGGAAGGACTGACAA
TAACTGGTCATACCACGTGTAAAAAGTCCTTTATCAGTGGAGAGAAAGAT
GATATGAGTATTTCTTTTGAAGCAGGTCCATTCACAACAAAAACATTCCC
TCAGGACggtaaaaaataccaaaaggtATGGTGAAAGTAACTAAAAATTT
CAACTGtatattatatcaaaatttctAATGAGAATAAAAATAGCACACTC
GATG
Run BLAST on NCBI

transcript from alignment at sc0000580:109510..116857-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026641 ID=TCONS_00026641|Name=TCONS_00026641|organism=Clytia hemisphaerica|type=transcript|length=7348bp|location=Sequence derived from alignment at sc0000580:109510..116857- (Clytia hemisphaerica)
TTTGAGTTAATTTTCATTATTCAATAAAAATTTCAATTTAAAATAAAGCT TTTAAACAAAACAGAATGTCCCCAAACGATTAAAAAGAACCGCTCCTTTT ACTGTTCAAACCCACCTGTATGTAAGTTATTACGAAAAAATTATGTTGCA TTTTCATTGCTAAAATTAATTACCGAACATTTGGAAGAAATATAAATTTG ATTGATTGGAAATGTAAATATTAAGTCAACTGTTATCAAGTTATATGCCA ATGACATTTCATTATTGATATAAAATTGGATATAAATTGTGGATGAAATT TCTCAAGGAATCATCTGCGTTTTTAACGAACGGTAAGTCGCGTTTTCTTA TATAAGAACTTCCAAGATTTTTGAAGCCTTCGGATGTTCTTAATTTTTCG AGTTTTAAGCCTCCTTATCATGGTCTCATTTTCACCCCTTTCTGAGTATT TTTAACCATTTTCCTGAGAAATCGGGTATGTTAGAGCCTGCAAAGCTTTA AAATGTTCTTAATTTGTTCTTAATCTTTTGGCTGTCAAAGCCTTATCTTA TTGGCATTATCTAAATGGCATAAAACCTATTGGCTATAAAACCTTTTTAA CAACTCAATCTAACTATGTAAAGGTATTACACATTATTAGTCACAGTTAC ACGTTTTTTTTTATATAAGGAACACGTTTATAAGGAACTCGAGGCTGAAA ATGGTCCAAAAAATAAGGAATTGTTTAGGAACTGCTCAGGCTGAGAATAA GAAAACAAGTTTTAAGGAACAGTAAGGGCCAGTAAGAGCTGGTTATCCAA ACTTAGCAGCTATATGTAAATAAGGAACTCGATAAGGAACTTTGAGGCTG AATTTTTCTGTAAAAATAAGGAACTCCAGGCTCAGAGCAAAGTTAAGGTT CCTTATAAAAAAAAAACGTGTATGCCCAAACCGAGAATTGAAAATTGGCC AATCGATTGTGATTTCGGGAATCATATTCTCGAGGAGTAGTCCCTAGGCT GCTGGCATCCAATAAAGGATTCGTGCTCCTTTTATACTATCTGGGGTTTT GTAGAGGTCTGCGATTCAGACTAAGGAGTCCCAAATGTTAAAGTTTTTAT CAGAACATAAACGTCTTTTCAGGAAGAAGACACAACAAGAACTACTCTTA CAAGAAAAAAAAGATAGTATCCAGCGTAAAAAATGCTCTAAAAAATAATA GCGCATATTACGCATACTATGGTCACGACAGTGAACTCATTAAATATTTA ACACCGAAATCACAATCAATTGGCTAATTTTCAATTCTCGGTTTGGGCAC AACTGTGACCTCAAACCTAGTAAAATGAGGGAGTGGTCAGGGTTGAAGAG GGCCAAAGTTATACTGCATGTAAATCTTGATATAATTTTTGTTGTTATTT TACAGAAGATGTTACACTTGATTTTCTTGCTCGTACTAACTGCTGTTAAA GGTGAGCTAGATTATTTCAGATACGTTTAAAATAGTAAACCTCGGGAAAA TTAATGCGTGTCCAAACTTTCGTTAATTCTTCGGACCCATCATCACCCCT CCTAGCATAATAAATTATACCTTTAAAGAAGCACATTACGATGTAGAACA TGAAAATCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAATTTAGG TTTTGCCAATTTTGCGAAAAACCGCAAAAACCAAAAAATGCTGACGTCAG CAAAACTTGTTTTTTAAATAACTCCAGTTTGGCTAATGGTATAAACGTGA AATTTGGACCAAAATTGCACATTATTAAAAAGATAATTTTGAAAAAAAAT GTTTTTGAAATTTTGCTGATGTCTGCACTTTATTGCATATTTTCGTATTT TGCTGATTTCTGCTGACGTCAGCAAAATTTGAAAAAAATGATTATGTAAA AATGTTTTTATTACTGATATGCAACTTTGGTCCAAATTTCANNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCG TAATGTGCTTCTTTAAAGGTATAATTTATTATGCTAGGAGGGGTGATGAT GGGTCCGAAAAATTAACGAAAATTTGGACACGCATTAATTTACCCGAGAC GAGTCACCTAAAATCTGCTTCAAATTCATTATTATATATCTAGACTAAAA ACCTTGTAAAAACTTTCTCCCGGGATGAGCTGGAGTTTTTACAAGATAAC TCACTAATTGGTCATTTGAAGTAATAGAGATGACGCGAAATGTTTTATTA CAGGTTAATGACCAATCAAATCAAGTGAGAGCTTATAAAAACTCCAATTT GTCCCGTAAAAACACATGTGAATTCATAAAATGTCGATTAGCTGTTCCAT AGGAAAAGTTCCTTAAAAGATGAAAAAAGGATGAACAGAATAATTTTTAA TTCTACAAATACATGAAACTTGAAACACAAATATTAAGAATCCGATTTTT CACTATAGGTCAACAATGGCCGGAAGACAGTTCAGCCAGGTGTACGCATA CATCAAAACAGACAGCTATGTATGGTCGATTTGCCTTCCAACCGCCCCTC AGTATTAAACCAATGACCTCATTTGAAGTTGACATTAAATGGGACGAATT GAAATTCAACCCCATCTCCAACCCCCATAAGAGAGGAGGTGTTTATATCT CTTATACCACGCAAGTTACAGGTGGACCACCTGGATATTTTGGTATTCAA ATTGTTAACAATGGAGGTAAAGATATTTCTCTTTTAATTGCGAATCGCAT TGAACGATATTGCTAAAAAACGAAATTTCTTGCTCTAATCTGATTCACAA GTATCGACTTTCTGCATGAAAAACTCCCAAATTCTAAAGTAAATTATCCT AAATTATTTTCCAACGGCCAAATTAAATTCTGGAAAATTCCCTTTTTGTA CGGGGAGATGAAAAGTTATTGACACGGATGTGGGAAGAAATATTTTGTAC AAGAAAACTGCCCTTCCAGTAAAAAAAACAACAATCTGCCAACGAGGACA TCAGCATTACTACACCCCTGTCTCGCGGCCCGTTTGAATATTTTCACTGA ATCTGGATGGTTTTGGAGTGTCATTTTTATCGCGTATTTTGTATGGGAAT AAAATTGTAGGTCAATTTCCCAGTGGGGTTGAAATTTTAGGGTATTTTTT TCTATCAAGGAGGAATATTACTATGTAGAGAGAGAATAAAAATAATTGTA TCTTTTCCAGGTAACTTCATTTTCTCGTTCTGGGATGGCGATCGCTTCAC AGGTAAAGGACACGACAAAGAACCAAAGAAATCATCTAAACTTGTTTGGC CCATCAATATGAAAAATTGTCAACGAAATTGCCAAGATTGTGGTCTTCCA CAATTAAGAGAGTTGGCGAAAAAAGGGTTTACAACTGGTACCAAATGTTT TGTTAAATATCCAAATATGAGGGTAAGTTAAAAATTATTACAGTTGAGTC TCCATAATTCGAACACGCAGGGGGGGGGGCACAAATTTGTTCGTGTTAAG GAAATTACGAGTTATAGAGTACTCTTGTCTCCCGAATAGACGCCCCCCCG CTAATTGCTAAGAGAAAAATCCATCCCCCCGCTCTTATTAACGAGTTTAT GTATGTGTGTTTTTCAGCGACGGAGACGGTAAGGTTCTAATTTGAGTAGA TCACAACCAGCTGAGGACGACGGTAAATCAGCACTTTTACCGTCCTCGAT TTTGCGGGGCGGAATTGCGGGTTTTTCCAAATCGCTTCAGTCACTCTATC GTCCTCAAAAGTGCAAATACATAAACTCGGTATTAAGATCCCATCCCTGC TAATTAAATTTGAATAAGTCAATATTTTATTACAGAGTAGATAGACCTTA AACTTGTTAAAATTTTCCTTTTTGTTAGTATTGGTTCTTACAGTATAAGT TTCTTTTTTATTGCTGAAATTGATATCAGTTAAAAAAAATTCGGTCTTCA AATTACCCCCCCCCCTCTTATTCCATCCCCCCCCGGAGCTATTTGAGTTA TAGAGATTCAAGTTATGGAGGTTCGAGTTAAAGAGACTCCATGGAGTCTC AGTGGATCTCCAATGTAAGTTTTCGTCGGATAGTAAAATTGGAACAGACA AATATTTCAAGTTTTCCTTTTACTCTACGGGCCCAAATAAACGTCTCCCC GGTTATTAATTTTTAAAAATATTTTCAGATATCAAAAGCTGAATTGCCCT AAATACCTAATAAGGGGGGGGGGTTAGAGGTACAATTTCCAACCCCCAGC TACTAAGTCTTTCTACAATAAAAGGAACGTTATAGTCCCAAAAACTGATG GAAAAAAAGGGAAATTCCCCACTTTCTGCATTAATTTATGCAAAATTAAA CAACTTTTTGGCCACAATTAGGCCAATAACTTTTGATCTAGAGAAGTTGG GAAATACATACATACATTTATTTGCTCAGTTTGAAGAGCTCTATCATGTG ATATAGGTCTTTTTTTAATTTGAAGACCCTCCAAAAATCATGAATTTCCA GGCCTTGCAATTTTGCCTGGAAACGCAAAAAATCCCTAATTACTCGTTAC TTGCACGAAAATATCGTGGAAACTTTTTGATTTTGGAATCTACATATGCT AATTCGTGAGTTTCCACCAAAAAAAGTTAGTTCTAAGATGTGTGTCACGA AATGAAACATTTATCGATCTCAGCAGCGGGACTATTATGTTACACTAATT TTTTACTTAATACCGGCACTAGAAACCTAGGAGCACCGGTTCTCCGAATC TCTCAACACTATTATTTTCTTTAGGTTGGTGATCGATACAAGATAGGTTT TCGTCGAAAATCGAAAGAATTTACAATCAACACCGCAGATTACGGTGGTA TGCCAAAATCACATTCAATTGTCGACGAGTATGACAGAGAAGTCACTGGT TAGTATTTTCTAGCTTACACAGCATTTTTAAACTAGTTGACTCTCTCTAA TTCGATCTTCAGAGGGCCAAAAACATTTTCTTCGAATTAAAGGAAAAATT TGGATTGCGGGGAGTATCCTATACAACTTTCCAGCTCTGGGAACCAATAT TTTAGTTCGAATCTAATAGAGGTTTGAATGACAGAGAGACAGAGACACGC CATTCGACCCCCGCCACGCAAACACAAATTTGGGGAATTCTTTTTTGTTA ATTCACATAACATCATCGACAAATATGACAAAAAAGTCATACTGATTAGT TATCTTTCATGAGAATTTTTGTGTGCCTTTGGAACCACGTCACTCAGTTC AGTGACAGTTTGCCCGACGGGTAGGTAGGTCTTTGTTCCATTGAGTTCAA ATCACCGAAATGACTAAAATTGAAACTCTTGGATGGNATTTCATCTCAGA ATCTAAGTTTCGGTGAAGCACACTTTTCCACCAAAATCGACACTCTGGCC ACAACAGGTAAAATAAGTGGTCCCGTTGCCCTAAAATTGGCCCTGCACTT ACCCTAAGCCTGTAAATNTATACTATCCCAAGATTCAAAGAAAACCCATT GCCAGAAAACAAAGAAAGTGCTAGATTATATTCGTAATAAAAAAGCAGCG CAAATCTTAACCTTTAGACACCGCTGTTTTTAAAAACAGCGCGCGCTGCT GCCGCTGTTTTTTTCATGGNCCAGAATAGTGGAAAAACTGAGGCAAAACA GCCCTGAGTTGTTGGAGCTAGAGATAGGCATGTATGTCAGGAAATACCCC CTAAAACCCCTTAGANCTGCTAAATTTTACAGAATAGAAAAATTCAAACT GGTCTTTATTTTATTAAACTTTGAAAGGACCCAAGTATCAAAACGTACGT GGTACGTCTCTCGGCCTGTATATATGACGTACGTGGTACGTCTCTCGGCG GCTAAAGGTTAAGGCTTCACTTTTTCTTGCTTGGTAGAAATTTCCCTCTG GTAATTCATGCTATAAGCTCAATGCCTAGATGACATCGGTTTCGTAACGG GTTCAGTAGTGGTATCGAAACCGGCTTTGTTAATCTTTCTGGCAGCTTTG GTAAAACGACCTTGAACGACCCGAACCAAGGCCCCATCTTTTATGCAACC TTTAAATTAGTTTTTGATGCACGAGCTGATGTAGTAAAAATATTATCTCC TTAAAACACAGGTGGATTATGGGAAATGTATGTAGAAGATGTCGATCGTG AAAGCAGGCATTTGGTGGGACAGATGCTTATGGAAGGAGATGGCAATGGG ATGAAATATATCAGAACTTTTGATGAAATGTTGGGATGTGTCAAGTGTAA TGCTATCCAACATAAAGATACAAGGTCAGTGTTTTTAGCCGAGATCTTAA TTAAAGGTTCTTAAACTTTAACAAGGACGCCGTTTTCAGTTTCTTGAAAC GTTCGTAAGGACAGCTTAAATGGATTAACTTTGGCGTGGATTTAATTTTG CACTTGGCCAAAATGACATTTTTAGCGGGGATTTAATTTGGCAAATGACT AATTCTCTTAAAAAAATTTTGAATTTCACGAATTTTTAAATTTTCGTTTT AATCCTTATTTAAATTGTTTCTATTGTTTCATCGTGGATTTGATCCTTAT TTTAATTGTTTCTATTGTTTCATCGTGGATTAGCTTAGTGTACGTGCTTT GTTTGTGTAATGCTTACATTTTATTATAGTGGTGGTTCTGAGAGGGGTTC AAAATGTATGACTTTTCATATCCTTATAAGGAGTATAGAAGTACGGTAAA AGAAACCCTCCTTCAGATCCGTCATTGTATTACATTCATGACCCTTTTTA AATATCCTCAATTATCTTATTTGTAGATATGGGCCATACATTGGAGGTGA CGGTATTCCAGTAAGAAAACCACTCAAAATGGAAGGACTGACAATAACTG GTCATACCACGTGTAAAAAGTCCTTTATCAGTGGAGAGAAAGATGATATG AGTATTTCTTTTGAAGCAGGTCCATTCACAACAAAAACATTCCCTCAGGA CGGTAAAAAATACCAAAAGGTATGGTGAAAGTAACTAAAAATTTCAACTG TATATTATATCAAAATTTCTAATGAGAATAAAAATAGCACACTCGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014994XLOC_014994Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026641-exon-sc0000580-1575043694:116526..116857TCONS_00026641-exon-sc0000580-1575043694:116526..116857Clytia hemisphaericaexon
TCONS_00026641-exon-sc0000580-1575043694:115407..115449TCONS_00026641-exon-sc0000580-1575043694:115407..115449Clytia hemisphaericaexon
TCONS_00026641-exon-sc0000580-1575043694:113842..114099TCONS_00026641-exon-sc0000580-1575043694:113842..114099Clytia hemisphaericaexon
TCONS_00026641-exon-sc0000580-1575043694:113136..113347TCONS_00026641-exon-sc0000580-1575043694:113136..113347Clytia hemisphaericaexon
TCONS_00026641-exon-sc0000580-1575043694:111660..111783TCONS_00026641-exon-sc0000580-1575043694:111660..111783Clytia hemisphaericaexon
TCONS_00026641-exon-sc0000580-1575043694:110284..110446TCONS_00026641-exon-sc0000580-1575043694:110284..110446Clytia hemisphaericaexon
TCONS_00026641-exon-sc0000580-1575043694:109510..109781TCONS_00026641-exon-sc0000580-1575043694:109510..109781Clytia hemisphaericaexon
TCONS_00026641-exon-sc0000580-1510915933:116526..116857TCONS_00026641-exon-sc0000580-1510915933:116526..116857Clytia hemisphaericaexon
TCONS_00026641-exon-sc0000580-1510915933:115407..115449TCONS_00026641-exon-sc0000580-1510915933:115407..115449Clytia hemisphaericaexon
TCONS_00026641-exon-sc0000580-1510915933:113842..114099TCONS_00026641-exon-sc0000580-1510915933:113842..114099Clytia hemisphaericaexon
TCONS_00026641-exon-sc0000580-1510915933:113136..113347TCONS_00026641-exon-sc0000580-1510915933:113136..113347Clytia hemisphaericaexon
TCONS_00026641-exon-sc0000580-1510915933:111660..111783TCONS_00026641-exon-sc0000580-1510915933:111660..111783Clytia hemisphaericaexon
TCONS_00026641-exon-sc0000580-1510915933:110284..110446TCONS_00026641-exon-sc0000580-1510915933:110284..110446Clytia hemisphaericaexon
TCONS_00026641-exon-sc0000580-1510915933:109510..109781TCONS_00026641-exon-sc0000580-1510915933:109510..109781Clytia hemisphaericaexon
TCONS_00026641-exon-sc0000580-1491911889:116526..116857TCONS_00026641-exon-sc0000580-1491911889:116526..116857Clytia hemisphaericaexon
TCONS_00026641-exon-sc0000580-1491911889:115407..115449TCONS_00026641-exon-sc0000580-1491911889:115407..115449Clytia hemisphaericaexon
TCONS_00026641-exon-sc0000580-1491911889:113842..114099TCONS_00026641-exon-sc0000580-1491911889:113842..114099Clytia hemisphaericaexon
TCONS_00026641-exon-sc0000580-1491911889:113136..113347TCONS_00026641-exon-sc0000580-1491911889:113136..113347Clytia hemisphaericaexon
TCONS_00026641-exon-sc0000580-1491911889:111660..111783TCONS_00026641-exon-sc0000580-1491911889:111660..111783Clytia hemisphaericaexon
TCONS_00026641-exon-sc0000580-1491911889:110284..110446TCONS_00026641-exon-sc0000580-1491911889:110284..110446Clytia hemisphaericaexon
TCONS_00026641-exon-sc0000580-1491911889:109510..109781TCONS_00026641-exon-sc0000580-1491911889:109510..109781Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000580supercontigsc0000580:109510..116857 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0858421 0.0277859 0.0977039 0 0.839181 0.729108 4.21129 5.07345 6.90738e-09 2.56631e-09 9.2251 1.7754 14.4227 12.1988 0.000367785 1.95016 8.71104 14.2074 12.3023 16.0587 36.2166 36.9353 2.25447 6.36948 58.2576 70.0766 0.0788759 0.0417954 0 0.0636552
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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