|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026635 ID=TCONS_00026635|Name=TCONS_00026635|organism=Clytia hemisphaerica|type=transcript|length=1138bp ATGAGGCACCAGCCGATTTGGAACGTAAGAGGATTTACTCGAACACAGAT GAGTACGAAGAAAAAGAACAGaccTACTTGGCTCCAGTTGATTCTCCTAC CAAAAAGGAAGTTTTTCAGCTCGAAGAACCTGGTGCTTTTATCGCCAAAG ATTCTGGTAAACCTAAGAAACGACGAACCATTGcttcaaagtttaaaaca tCCATACCGAAAGATGTTTTGCGTAAACGATTGAAGAAGAAGTTAATGTG GATTGGCATTGCAATGTTGATAATTGTTTTGGTCATTGCGATTATCATCT TGGCAACCAGGAAAACGGCAAAACAGGAGTCAGATGAGAAAGACATCAAT TttgcaatttcattttttaatcattcGACATCGACCGGTATTGTTACCTC GAAGAAAATAAAAGAGTTCGATCTTCATTCAAACTTCACATTATGTTTAT GGATGAAAGTGGAAGCAGAACCAACATTGGGAACTGATTTGGTGAATGTC TTCAACTTCAAAACATTCAAGTCTGAAATGTTACTCGAATTGGACAAGAA TCGTTTGATAAAATTCGCATTCGATGACAAGGTTTTTAGTTTTCCTCGAT CAAACATAGACGTATGGGAGCCACTTTGCTTGAGCAAGGAGCATCTAATG TTAAATGTTTTCACCCGAAGTCAGAATGGAACTATTGATTCTATTGTTAT TGGAATCCTTGGTCCTTTATCACCAAGAAAATTGCAACAGTTGGTTATAA TTGGTCATAGTGAAATGCCGGGTTTTGATGTTAAAACAGGTGAATACAAG GGAAGTATTGCTCACTTATTCCTCTACTCCAAAGCTTTGAGTGTGAATCA AGTCGCTGCTTTCTTCGATAAGAATCCACCAATGGACAATGTTGGGTTTG GATGGTGGGATTTCAAAAATCAAGCATTGCCAGGGTATTCTGAAGAAATC AAACCCTTCTCACGAGACTGATATTACTTCAAATGCAATAAAAGTGCGGT TACTACATTAGATCCCCGATTAGATTGTTTGGCAAttctttaattggatt aattttcgctaAATTTAATCTTGTGtttttgcgaattctttgtcattttc acgaaaataaatcgagaaatatttttgtgaaattaatC Run BLAST on NCBI protein sequence of TCONS_00026635-protein >TCONS_00026635-protein ID=TCONS_00026635-protein|Name=TCONS_00026635-protein|organism=Clytia hemisphaerica|type=polypeptide|length=322bp
EAPADLERKRIYSNTDEYEEKEQTYLAPVDSPTKKEVFQLEEPGAFIAKD SGKPKKRRTIASKFKTSIPKDVLRKRLKKKLMWIGIAMLIIVLVIAIIIL ATRKTAKQESDEKDINFAISFFNHSTSTGIVTSKKIKEFDLHSNFTLCLW MKVEAEPTLGTDLVNVFNFKTFKSEMLLELDKNRLIKFAFDDKVFSFPRS NIDVWEPLCLSKEHLMLNVFTRSQNGTIDSIVIGILGPLSPRKLQQLVII GHSEMPGFDVKTGEYKGSIAHLFLYSKALSVNQVAAFFDKNPPMDNVGFG WWDFKNQALPGYSEEIKPFSRD Run BLAST on NCBI transcript from alignment at sc0000580:26591..31772- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026635 ID=TCONS_00026635|Name=TCONS_00026635|organism=Clytia hemisphaerica|type=transcript|length=5182bp|location=Sequence derived from alignment at sc0000580:26591..31772- (Clytia hemisphaerica) ATGAGGCACCAGCCGATTTGGAACGTAAGAGGATTTACTCGAACACAGAT
GAGTACGAAGAAAAAGAACAGGTAATAATTCTGTTAGTCCGATTTTCCAT
TTATTTAAAGGACATTATTTAACTCCTACCATTTGCATTTGCTACAACTT
TCTCCGCTTTCTGCGAAATTCTTTTGCTTATTCTACTTACACCAGAAGAA
ATTAACAGATTATCTTTCAATCCTTATGATAAAATATGACTTACTCTGTA
GAGCCACTTACTTAGTAGATTAGTCTTAATTGTAGGAGGGGTGGAATAAG
CAGGTTAGTACTCTGGGAGAAAAAATGGGGGGGGGCAATATTGAGTGAAT
CTGGGTGATTTCCCCAAAAAAACCCACGAAAATAAAGTTTTTCGCACTTT
TCCAGGAAAATTTCATAAAATGGGAGGGATTATAAAATGCTATTGGGTGA
TTTTTTTTCCTAAAAAATTGCAAAGTGACCTCTCCCTAAAATTAAGCACA
AAAGAGTAATTTAACCTAAGAGGGTAAGTAATTGGCAAGGCTCGGGTTCA
ATATGCCAGCAGCTCTACTGCAAACTGAAAGGGGATACTTATTGTAGCGG
TACAATATGCCAGCATTTCTACCGCAAAATAAAAGAGATAAGCTTCCTGT
AGACGCGCCCTTTTTCAATATTCTCCAAAGAAACCAGCTTTTCGCTTTTA
GTAAACTTTATTAAACTTTGAATAAAATCTGCTAGCCAAATCAATTCAAA
CGATTTATATAATTATCAAATTTAGACCTACTTGGCTCCAGTTGATTCTC
CTACCAAAAAGGAAGTTTTTCAGCTCGAAGAACCTGGTGCTTTTATCGCC
AAAGATTCTGGTAAACCTAAGAAACGACGAACCATTGCTTCAAAGTTTAA
AACATCCATACCGAAAGATGTTTTGCGTAAACGATTGAAGAAGAAGTTAA
TGTGGATTGGCATTGCAATGTTGATAATTGTTTTGGTCATTGCGATTATC
ATCTTGGCAACCAGGAAAACGGCAAAACAGGAGTCAGATGAGAAAGGTTG
GTTTATATGTTTTACTATCAGGCAAAGAAAACGTTTCACCTCACCATCGA
TTAAAATGAAAATTTGCCACGAGTTTGAGGTTCATAGCTGACCTAAATCT
AAGAATAAGTTTTGGAAGTCTGACGCTTTGTTGTGCGCAGATATGTAATT
ATTTTGCGCAGATATGTAATTTCTGCGCAAATATGTAATTATTTTGCGCA
ACTATGTAATTTCTAGCTGCGCAGATATGTAAAACACGATCTTTAAAATC
AATGGTACCCCATTGATAGCTTTTACCATTATTTTTACCTTTTTTGGACT
TAGGTATTTTAGCTAATTTCTATCAAATACAAGAAGTAATATCTTATTAT
GAGCATCTACTATTATAAGAATCNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCTGAA
AGTCTTAAAATCAAAAAGACGCCCAGGACGTTTATTCGAAGAAATACGGT
AGTTTTTACAAAGTTAACAAGGGACAACATGTTAAGAATATCTTTAGGCA
GAAACCTCAAAAAAATTCTTAAAAAAAAAGTGAACCCATCTATAGCAAGG
TAAGCTCAAGATTCGGATTTTCTATTTATCTTATCGGTACAACCTAATAA
AAAAGTACAATATCTATAATGAGATCTTCGATAGAACCTCGACTCGAGAT
AGTCGCACCTATGTAAACTTTATTGATTTTGTAGATATGGATTGCATTTC
TTTACGCATTACAGTGAGATAAAGTAAAATTCTATTGGTTGTCTTTACCA
ACGCATGGAATAATTCATGATAAAAACTCCCTTTTCCTTTTCATTGTTCC
ATCTACGAGCAAAGTCATTATATTTGATTGGATTATCCAATGAAATAGAG
TGGGATTATTGAAGGTGTGATTCTCGCTCGAACTTAGATTCTGAAGAATG
TCATACATTTCAGGAACATTTTGACACTGACTGTTAAAGATATTAAAAAA
AATTACATGTCTTTCTTATTTTCCCCTTACAAATTAAACTAAGGCAAAAT
ATGCGACTTTAAGCCATCTAAAAGGAGACAAATTTAANNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCTTTCAGAGATTTGATTTATCAAACAAAAGCTAACAAATAGTGTTTAA
GAGTTATGAATTGTGTTCTTATAAAGTTGATGCTTATAAGAAAAATAACA
TTTTATAGCTTAAGCACAATCCTATATTTACTTTGAAAGAACCAAACGCC
AAAAGCTAATAATCATTGGTTTAGAAGTTATGAATTGTGTTCTTAAAAAG
TTGATGCTTATAAGAAAAATAAAATTTTCTAGCTTAAGCACAATCCTTTA
TTTACTTTGAAAGAACAAAACGCCAAAAGCTAATAATCATTGGTTTAGAA
TTTATTAATTGTGTTCTTATAAAGTTGATGCTTATAAGAAAAATAAAATT
TTCTAGCTTAAGCACAATCCCTTATTTACTTTGAAAGAACAAAACGCCAA
AAGCTAATAATCATTGGTTTAGAATTTATGAATTGTGTTCTTATAAAGTT
GATGCTTATAAGAAAAATAAATGTTTCTAGCTTAAGCACAATCCAATATT
TGCTTTGAAAGAACCAAACGCCGAAAGCTAATAATCATTGGGTTTAAGAA
GTTATGAATTGTGTTCTTATAAAGTTGATGCTTATAAGAAAAATAAAATT
TTCTAGCTTAAGCACAATCCTATATTTACTTTGAAAGAACCAATCGCCGA
AAGCCAATATCACTTTGATAAAAAGATATTGACTTGTTTCTTATAAAGAT
GACGCTTAATAAAAACAACAATTGCCAAATCTTTGGCATAGTCCAAGAAC
AAAGTCCAAGATATTACTTCTTGTATTAGAAAAATTTATGTTAAAATCGA
GTCAGTTTTTCAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGCAAAATAATTACATATTTGCGCAGAAATTATATATCTGCGC
AAAATAATTACATATCTGCGCAGAAATTACATATCTGCGCAAAAATTACA
TATCTGCACATAACACGCTTTTAAAAAGGTTGATACGATTTTCTATACCT
TTAATCTGCCAGTCTAATTTGCAGACCTCTATTAATATACTTCCTAGAAT
AAGCTTAATCGTTAAAGGATGAGCAGAAGCCTAGTAATCTTTTTATGTTT
AAATTTTGATAAGTCATTCTATTTTCATGTTTACAGACATCAATTTTGCA
ATTTCATTTTTTAATCATTCGACATCGACCGGTATTGTTACCTCGAAGAA
AATAAAAGAGTTCGATCTTCATTCAAACTTCACATTATGTTTATGGATGA
AAGTGGAAGCAGAACCAACATTGGGAACTGATTTGGTGAATGTCTTCAAC
TTCAAAACATTCAAGTCTGAAATGTTACTCGAATTGGACAAGAATCGTTT
GATAAAATTCGCATTCGATGACAAGGTTTTTAGTTTTCCTCGATCAAACA
TAGACGTATGGGAGCCACTTTGCTTGAGCAAGGAGCATCTAATGTTAAAT
GTTTTCACCCGAAGTCAGAATGGAACTATTGATTCTATTGTTATTGGAAT
CCTTGGTCCTTTATCACCAAGAAAATTGCAACAGTTGGTTATAATTGGTC
ATAGTGAAATGCCGGGTTTTGATGTTAAAACAGGTGAATACAAGGGAAGT
ATTGCTCACTTATTCCTCTACTCCAAAGCTTTGAGTGTGAATCAAGTCGC
TGCTTTCTTCGATAAGAATCCACCAATGGACAATGTTGGGTTTGGATGGT
GGGATTTCAAAAATCAAGCATTGCCAGGGTATTCTGAAGAAATCAAACCC
TTCTCACGAGACTGATATTACTTCAAATGCAATAAAAGTGCGGTTACTAC
ATTAGATCCCCGATTAGATTGTTTGGCAATTCTTTAATTGGATTAATTTT
CGCTAAATTTAATCTTGTGTTTTTGCGAATTCTTTGTCATTTTCACGAAA
ATAAATCGAGAAATATTTTTGTGAAATTAATC Coding sequence (CDS) from alignment at sc0000580:26591..31772- >TCONS_00026635 ID=TCONS_00026635|Name=TCONS_00026635|organism=Clytia hemisphaerica|type=CDS|length=2907bp|location=Sequence derived from alignment at sc0000580:26591..31772- (Clytia hemisphaerica) ACATCAATTTTGCAATTTCATTTTTTAATCATTCGACATCGACCGGTATT GTTACCTCGAAGAAAATAAAAGAGTTCGATCTTCATTCAAACTTCACATT ATGTTTATGGATGAAAGTGGAAGCAGAACCAACATTGGGAACTGATTTGG TGAATGTCTTCAACTTCAAAACATTCAAGTCTGAAATGTTACTCGAATTG GACAAGAATCGTTTGATAAAATTCGCATTCGATGACAAGGTTTTTAGTTT TCCTCGATCAAACATAGACGTATGGGAGCCACTTTGCTTGAGCAAGGAGC ATCTAATGTTAAATGTTTTCACCCGAAGTCAGAATGGAACTATTGATTCT ATTGTTATTGGAATCCTTGGTCCTTTATCACCAAGAAAATTGCAACAGTT GGTTATAATTGGTCATAGTGAAATGCCGGGTTTTGATGTTAAAACAGGTG AATACAAGGGAAGTATTGCTCACTTATTCCTCTACTCCAAAGCTTTGAGT GTGAATCAAGTCGCTGCTTTCTTCGATAAGAATCCACCAATGGACAATGT TGGGTTTGGATGGTGGGATTTCAAAAATCAAGCATTGCCAGGGTATTCTG AAGAAATCAAACCCTTCTCACGAGACTGAACCTACTTGGCTCCAGTTGAT TCTCCTACCAAAAAGGAAGTTTTTCAGCTCGAAGAACCTGGTGCTTTTAT CGCCAAAGATTCTGGTAAACCTAAGAAACGACGAACCATTGCTTCAAAGT TTAAAACATCCATACCGAAAGATGTTTTGCGTAAACGATTGAAGAAGAAG TTAATGTGGATTGGCATTGCAATGTTGATAATTGTTTTGGTCATTGCGAT TATCATCTTGGCAACCAGGAAAACGGCAAAACAGGAGTCAGATGAGAAAG GAGGCACCAGCCGATTTGGAACGTAAGAGGATTTACTCGAACACAGATGA GTACGAAGAAAAAGAACAGACATCAATTTTGCAATTTCATTTTTTAATCA TTCGACATCGACCGGTATTGTTACCTCGAAGAAAATAAAAGAGTTCGATC TTCATTCAAACTTCACATTATGTTTATGGATGAAAGTGGAAGCAGAACCA ACATTGGGAACTGATTTGGTGAATGTCTTCAACTTCAAAACATTCAAGTC TGAAATGTTACTCGAATTGGACAAGAATCGTTTGATAAAATTCGCATTCG ATGACAAGGTTTTTAGTTTTCCTCGATCAAACATAGACGTATGGGAGCCA CTTTGCTTGAGCAAGGAGCATCTAATGTTAAATGTTTTCACCCGAAGTCA GAATGGAACTATTGATTCTATTGTTATTGGAATCCTTGGTCCTTTATCAC CAAGAAAATTGCAACAGTTGGTTATAATTGGTCATAGTGAAATGCCGGGT TTTGATGTTAAAACAGGTGAATACAAGGGAAGTATTGCTCACTTATTCCT CTACTCCAAAGCTTTGAGTGTGAATCAAGTCGCTGCTTTCTTCGATAAGA ATCCACCAATGGACAATGTTGGGTTTGGATGGTGGGATTTCAAAAATCAA GCATTGCCAGGGTATTCTGAAGAAATCAAACCCTTCTCACGAGACTGAAC CTACTTGGCTCCAGTTGATTCTCCTACCAAAAAGGAAGTTTTTCAGCTCG AAGAACCTGGTGCTTTTATCGCCAAAGATTCTGGTAAACCTAAGAAACGA CGAACCATTGCTTCAAAGTTTAAAACATCCATACCGAAAGATGTTTTGCG TAAACGATTGAAGAAGAAGTTAATGTGGATTGGCATTGCAATGTTGATAA TTGTTTTGGTCATTGCGATTATCATCTTGGCAACCAGGAAAACGGCAAAA CAGGAGTCAGATGAGAAAGGAGGCACCAGCCGATTTGGAACGTAAGAGGA TTTACTCGAACACAGATGAGTACGAAGAAAAAGAACAGACATCAATTTTG CAATTTCATTTTTTAATCATTCGACATCGACCGGTATTGTTACCTCGAAG AAAATAAAAGAGTTCGATCTTCATTCAAACTTCACATTATGTTTATGGAT GAAAGTGGAAGCAGAACCAACATTGGGAACTGATTTGGTGAATGTCTTCA ACTTCAAAACATTCAAGTCTGAAATGTTACTCGAATTGGACAAGAATCGT TTGATAAAATTCGCATTCGATGACAAGGTTTTTAGTTTTCCTCGATCAAA CATAGACGTATGGGAGCCACTTTGCTTGAGCAAGGAGCATCTAATGTTAA ATGTTTTCACCCGAAGTCAGAATGGAACTATTGATTCTATTGTTATTGGA ATCCTTGGTCCTTTATCACCAAGAAAATTGCAACAGTTGGTTATAATTGG TCATAGTGAAATGCCGGGTTTTGATGTTAAAACAGGTGAATACAAGGGAA GTATTGCTCACTTATTCCTCTACTCCAAAGCTTTGAGTGTGAATCAAGTC GCTGCTTTCTTCGATAAGAATCCACCAATGGACAATGTTGGGTTTGGATG GTGGGATTTCAAAAATCAAGCATTGCCAGGGTATTCTGAAGAAATCAAAC CCTTCTCACGAGACTGAACCTACTTGGCTCCAGTTGATTCTCCTACCAAA AAGGAAGTTTTTCAGCTCGAAGAACCTGGTGCTTTTATCGCCAAAGATTC TGGTAAACCTAAGAAACGACGAACCATTGCTTCAAAGTTTAAAACATCCA TACCGAAAGATGTTTTGCGTAAACGATTGAAGAAGAAGTTAATGTGGATT GGCATTGCAATGTTGATAATTGTTTTGGTCATTGCGATTATCATCTTGGC AACCAGGAAAACGGCAAAACAGGAGTCAGATGAGAAAGGAGGCACCAGCC GATTTGGAACGTAAGAGGATTTACTCGAACACAGATGAGTACGAAGAAAA AGAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
| TCONS_00026635-exon-sc0000580-1575043694:31702..31772 | TCONS_00026635-exon-sc0000580-1575043694:31702..31772 | Clytia hemisphaerica | exon |
| TCONS_00026635-exon-sc0000580-1575043694:30727..30997 | TCONS_00026635-exon-sc0000580-1575043694:30727..30997 | Clytia hemisphaerica | exon |
| TCONS_00026635-exon-sc0000580-1575043694:26591..27386 | TCONS_00026635-exon-sc0000580-1575043694:26591..27386 | Clytia hemisphaerica | exon |
| TCONS_00026635-exon-sc0000580-1510915933:31702..31772 | TCONS_00026635-exon-sc0000580-1510915933:31702..31772 | Clytia hemisphaerica | exon |
| TCONS_00026635-exon-sc0000580-1510915933:30727..30997 | TCONS_00026635-exon-sc0000580-1510915933:30727..30997 | Clytia hemisphaerica | exon |
| TCONS_00026635-exon-sc0000580-1510915933:26591..27386 | TCONS_00026635-exon-sc0000580-1510915933:26591..27386 | Clytia hemisphaerica | exon |
| TCONS_00026635-exon-sc0000580-1491911889:31702..31772 | TCONS_00026635-exon-sc0000580-1491911889:31702..31772 | Clytia hemisphaerica | exon |
| TCONS_00026635-exon-sc0000580-1491911889:30727..30997 | TCONS_00026635-exon-sc0000580-1491911889:30727..30997 | Clytia hemisphaerica | exon |
| TCONS_00026635-exon-sc0000580-1491911889:26591..27386 | TCONS_00026635-exon-sc0000580-1491911889:26591..27386 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
| sc0000580 | supercontig | sc0000580:26591..31772 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
| IPR013320 | ConA-like_dom |
Blast
The following BLAST results are available for this feature:
|