TCONS_00026632 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026632
Unique NameTCONS_00026632
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length634

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026632 ID=TCONS_00026632|Name=TCONS_00026632|organism=Clytia hemisphaerica|type=transcript|length=634bp
GTTAAAGTTGGAGTGGTGAAAGTGATAAGCTGATCTGGAGTCTGGTGTAA
GAAAAATGGAAAGGAGAAACTTAATTTAACCACAAAATCATGATGTGTCG
TGACGTGATGCTGTATATCATAACATAAACTCCACGAAACCATTTCTCGT
CAAGTAAATCAAGGGTTAAATGACTTAATCAATCACTGAAACTGTACAAC
TCTCTGCACCATAAAGGAAAAATCCAGATAGCCTACACCACATGATCTGA
CAGACAAAACGAGAAAGagAACACCATGAACTGACACGATCTTTGAAGAA
AGCTGATTGACTTATGATCCTGAAATCGAGTTATTTGGCAAGTGACGGTT
ACTGATTTCTTTGATTGTTTGTTTCAAGAGCTACAAGTTGCTTGAAATAG
GATACTGATCTTGGAATTTTAATAAAGAAAGTTTGACCAAAGATTAACTT
ATTTGACTAATACTCTTAAGTTTTTGCCCTCATACATTGTATACACAGCA
TTTgtattttttctgtatttttttacCTTGTAATTTACGTTATCTAAATA
TTAAATTTACTTTATCTTATTTAATATGAATTTTTAGTTCTTCTAAAGAT
GAAATAGATCAGTAAAATGAAATGTAAACTAAAA
Run BLAST on NCBI

transcript from alignment at sc0000580:140094..141833+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026632 ID=TCONS_00026632|Name=TCONS_00026632|organism=Clytia hemisphaerica|type=transcript|length=1740bp|location=Sequence derived from alignment at sc0000580:140094..141833+ (Clytia hemisphaerica)
GTTAAAGTTGGAGTGGTGAAAGTGATAAGCTGATCTGGAGTCTGGTGTAA
GAAAAATGGAAAGGAGAAACTTAATTTAACCACAAAATCATGATGTGTAA
GTATTACTTCACCGATTTATATCTAGTTTTTGCTATTTCTATATATCCTA
AACTAAGGGTCGATCAGAGAACACtcatttaaggatttttttgcatcttt
ttgcattttgtttctttaatttgCCTTTGCGATTTGTCATGTCATTCACC
CAGATCAGGGGtatattttctactttttttttacttttttgtaaatgtTG
TTTTCCTTTGCTGTTCATTTGTTATTGttgtcaaaatgtttgactCTTTT
GTCTTTCTACACTACAGGTCGTGACGTGATGCTGTATATCATAACATAAA
CTCCACGAAACCATTTCTCGTCAAGTAAATCAAGGGTAAGTAAGGAAATT
ATCTGCTTATTTGTAttctactttttttaaaagaactataAGCTAGATAA
TTTGTTATATATGTaggtatttcaattttttttgagcaaTGAAATGATTT
TGGCAAAGCtttcttctcaatttttgaCTATTCTGAGATATGattaaaat
gattatctttgttTGTGAATGAATGATGGAGCAATATACATcagttttgt
ttctttttacgCAGGTTAAATGACTTAATCAATCACTGAAACTGTACAAC
TCTCTGCACCATAAAGGAAAAATCCAGATAGCCTACACCACATGATCTGA
CAGACAAAACGAGAAAGGTATTTATCACagaattaaattaatttttttca
acaatTCTTAGTCCATTTGCTTTACAAGGTAACCTTTTCTCTCGAAACTa
gagataaaataaaatttcccggaggggggggggcacttagtcAAAATTGG
GTATGGGGACGTTTTGCTGggcagggtcccttttttataCTATATCTAAC
AGGGtgcaaaattttccaattttcaagaTGAGTTTCTTATAGggtcgaat
gttttgattattttggacacttttcagggtggaaatgagaaaatttgaaa
gtttttcggctacttttattaatttttgccatTCCAGGGTGAAAATGAga
gatcttttaattttttattctgACAGGGTTCCAATTTTGCCAAAAGTTCA
CATCTGATAGGATCAACTTTTCAGTCTCCAGTGGTACTTCCCCGTTGACC
GTCAAGGTCAGAGCCCTTGGGTTAATTTCGTGATAAGATTcatattttta
cttttgataGTTTGACCATATTATtatcgattttcaatttttcttcagag
AACACCATGAACTGACACGATCTTTGAAGAAAGCTGATTGACTTATGATC
CTGAAATCGAGTTATTTGGCAAGTGACGGTTACTGATTTCTTTGATGTTC
TGAGTNGACTTATGATCCTGAAATCCAGTTATTTGGCAAGTGACGGTTAC
tgatttctttgatgttttgagTGTTTGTTTCAAGAGCTACAAGTTGCTTG
AAATAGGATACTGATCTTGGAATTTTAATAAAGAAAGTTTGACCAAAGAT
TAACTTATTTGACTAATACTCTTAAGTTTTTGCCCTCATACATTGTATAC
ACAGCATTTgtattttttctgtatttttttacCTTGTAATTTACGTTATC
TAAATATTAAATTTACTTTATCTTATTTAATATGAATTTTTAGTTCTTCT
AAAGATGAAATAGATCAGTAAAATGAAATGTAAACTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014986XLOC_014986Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026632-exon-sc0000580-1491911889:140094..140189TCONS_00026632-exon-sc0000580-1491911889:140094..140189Clytia hemisphaericaexon
TCONS_00026632-exon-sc0000580-1510915933:140094..140189TCONS_00026632-exon-sc0000580-1510915933:140094..140189Clytia hemisphaericaexon
TCONS_00026632-exon-sc0000580-1575043694:140094..140189TCONS_00026632-exon-sc0000580-1575043694:140094..140189Clytia hemisphaericaexon
TCONS_00026632-exon-sc0000580-1491911889:140461..140528TCONS_00026632-exon-sc0000580-1491911889:140461..140528Clytia hemisphaericaexon
TCONS_00026632-exon-sc0000580-1510915933:140461..140528TCONS_00026632-exon-sc0000580-1510915933:140461..140528Clytia hemisphaericaexon
TCONS_00026632-exon-sc0000580-1575043694:140461..140528TCONS_00026632-exon-sc0000580-1575043694:140461..140528Clytia hemisphaericaexon
TCONS_00026632-exon-sc0000580-1491911889:140758..140860TCONS_00026632-exon-sc0000580-1491911889:140758..140860Clytia hemisphaericaexon
TCONS_00026632-exon-sc0000580-1510915933:140758..140860TCONS_00026632-exon-sc0000580-1510915933:140758..140860Clytia hemisphaericaexon
TCONS_00026632-exon-sc0000580-1575043694:140758..140860TCONS_00026632-exon-sc0000580-1575043694:140758..140860Clytia hemisphaericaexon
TCONS_00026632-exon-sc0000580-1491911889:141392..141489TCONS_00026632-exon-sc0000580-1491911889:141392..141489Clytia hemisphaericaexon
TCONS_00026632-exon-sc0000580-1510915933:141392..141489TCONS_00026632-exon-sc0000580-1510915933:141392..141489Clytia hemisphaericaexon
TCONS_00026632-exon-sc0000580-1575043694:141392..141489TCONS_00026632-exon-sc0000580-1575043694:141392..141489Clytia hemisphaericaexon
TCONS_00026632-exon-sc0000580-1491911889:141565..141833TCONS_00026632-exon-sc0000580-1491911889:141565..141833Clytia hemisphaericaexon
TCONS_00026632-exon-sc0000580-1510915933:141565..141833TCONS_00026632-exon-sc0000580-1510915933:141565..141833Clytia hemisphaericaexon
TCONS_00026632-exon-sc0000580-1575043694:141565..141833TCONS_00026632-exon-sc0000580-1575043694:141565..141833Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000580supercontigsc0000580:140094..141833 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.39885	2.39098	1.13642	0.578304	23.7969	15.7647	14.0355	11.4185	9.75177	10.108	9.7188	11.8449	11.4344	12.5042	11.0808	10.6181	20.5673	20.7361	23.6207	20.1758	26.6982	23.4882	13.7349	19.2341	6.36814	8.6234	32.1969	29.5663	23.0217	23.892
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026632 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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