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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026627 ID=TCONS_00026627|Name=TCONS_00026627|organism=Clytia hemisphaerica|type=transcript|length=3411bpRun BLAST on NCBI transcript from alignment at sc0000580:79439..96927+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026627 ID=TCONS_00026627|Name=TCONS_00026627|organism=Clytia hemisphaerica|type=transcript|length=17489bp|location=Sequence derived from alignment at sc0000580:79439..96927+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00026627 vs. Swiss-Prot (Human)
Match: SVOP (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1) HSP 1 Score: 446.047 bits (1146), Expect = 5.439e-143 Identity = 232/502 (46.22%), Postives = 329/502 (65.54%), Query Frame = 1
Query: 850 KNLRTMDDVDRTESNADQEASTPQQEQVEMTEIG----------EQTYTLDEAIEHIGFGIYHVKVIVIAGLSWMADAMEMMILSILSPILMCEWGLMNYEEALITTVVFLGQGFGSISWGFVSDMFGRKKGLYLSVCLVLFFGICSSQAPSYGWMLALRLLVGFGIGGVPQAVTIVTEVLPLSSRGRAIVILEFFWALGSVFAAAIAIGVIEHLKWRWYLVIITLPMFFFLFTGFWLPESPRYLMTVGKTDQVMKLLKKMAAENGKTLPEGTLM--KQEINTRRGRPIDLFQPEWIRTTLLLFVIWFTSAFTYYGIVLLTTEMFQT-EIDGCNPYNKH-EKQALGGCHHLTNKDYTDFMLTTLAEFPGLLLAIFLIEYFGRKKTLAILFGSAAVSFC--LLAICSGRTMSVIFVFAVRGFVTGSFQVAYVYTPEVLPTNVRAVGLGSCSTFARIGAMTTPFVAQVLIHVSFYLVVGVYATLISLCVVAALFLPIETKGKVL 2307
++ R+ DD E E E VE+ + + T+ +++A+E IGFG + K+ V+ GL+WMADAMEMMILSIL+P L CEW L +++ AL+T+VVF+G S WG +SD +GRK GL +SV L++GI S+ AP Y W+L LR LVGFGIGGVPQ+VT+ E LP+ +R + I+++E FWA+G+VF +A+ V+ L WRW L++ +P+ F FWLPES RY + G ++ + LK++A ENG +P G L+ +QE RG+ DLF P + TTLLL+ IWF++AF+YYG+VLLTTE+FQ ++ G + K E + C +L+ +DY D + TTL+EFPG+L+ +++I+ GRKKT+A+ F SFC LL IC GR + + +F R F++G FQ AYVYTPEV PT RA+GLG+CS AR+GA+ TPF+AQV++ S YL + VY+ L +A+ FLPIETKG+ L
Sbjct: 21 ESARSEDDTASGEHEVQIEGVHVGLEAVELDDGAAVPKEFANPTDDTFMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRKTGLKISVLWTLYYGILSAFAPVYSWILVLRGLVGFGIGGVPQSVTLYAEFLPMKARAKCILLIEVFWAIGTVFEVVLAVFVMPSLGWRWLLILSAVPLLLFAVLCFWLPESARYDVLSGNQEKAIATLKRIATENGAPMPLGKLIISRQE---DRGKMRDLFTPHFRWTTLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCF--VIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLTLAVYSGCCLLAALASCFLPIETKGRGL 517 The following BLAST results are available for this feature:
BLAST of TCONS_00026627 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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