TCONS_00026609 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026609
Unique NameTCONS_00026609
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026609 ID=TCONS_00026609|Name=TCONS_00026609|organism=Clytia hemisphaerica|type=transcript|length=1368bp
aaagtaaaatctatcactaggcgcgttctaggcgtgttctggatggaaaa
taaatggcttcacttttttgcCTGGGAAACGtgagagattctactctagt
cctttgggctttaaactcgatgTTAAAAAAAACCCTACTGTGTATCCTTT
TCTTGAGTAATTGGTAAACTTTTAATTCTTAGGAgctaaaactgaaaaag
aattcATACATACCTCAAAAAGAAACTCGATTGAAATAAGATGTCAGATT
ACATCGTATTTGAGGGACCATTAACAAAATCACCACCGTTGAAAAAACAA
CACTTGGCTCGTTGGAAATATCGCTATTTTGTACTGTACGATACCTTTCC
TGATACCAACAAAGACGGGCGTCGAGTATTGAAATTGCTTTATTTTAAAA
GCAAAGAAGAGTCAAGGAATGGTAGCAAACCTCTTGGGTCAATCAATTTG
CTGGAAGTTGAAGTGTTAGCTGTTTCTGACAAACCTGTGAACGGATACCC
TTTTGTGCTCAACATTCATGCAAATGACAGAACATGGTATTTATGCACCA
GATCTTTCTATGATTTCATTGATTGGATAACTGTGTTGAAAGAAAGAACA
GATGCATTTCTAAAAGAGagGGATAGACACACAACACATCGACGTAACCA
ATatgaaatacaaagaaaaaacaGCATAAGCACAGTTGAAAGTTCAACAA
CGTGCAGTTGGAGTCATATGTCCAGAGATCGGCTAGATACGACAGATATT
CATGAAATTCttgaagatcaaaatttgtttCCTGGTCGTCCTGCTCAAAA
AGATGATAAGCATTCGGGGTATGATACATGGCCCCGACGTTCAATGACAG
TATCCCGATTCGGGAACATTGATAACCGATATGAAACCGATTCCCTTACT
TCATCTCATATTTACGAGAAAATGGATATCCTTTGCCAAAACGATGCTCG
AAGCTTTGCATCAGAAAGCGAAAGTGTTTCCTTGTCCTCGCAAagagaaa
gtgaagaaaatcaATCACATTCTATAGAAAAAAGGCCTGGGAGCATACGA
TTCAGAACAATAAAAAGTAGTATGAGGGCTTACAGAAGACACCGAAGCTT
CGAGGAAAATCAGATCACCAGATTTCTTAGTGATGATCATCTTGTATTCA
ATATCTTTTTCCATAAATGAATTGATATTTGGACGGGATTACTTAAACAA
GAgaacaatcaaataaaaatagacGATAACGGACTCTTCTGGAAatataa
tacacccctgtgacacagacccactgggacccaagccccactagaaaatt
tggcaaagattttgtccccggtgggaaaataccctgaaatttcagccccg
cTGGGAAATGGACTTGAT
Run BLAST on NCBI

transcript from alignment at sc0000576:51075..54725-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026609 ID=TCONS_00026609|Name=TCONS_00026609|organism=Clytia hemisphaerica|type=transcript|length=3651bp|location=Sequence derived from alignment at sc0000576:51075..54725- (Clytia hemisphaerica)
AAAGTAAAATCTATCACTAGGCGCGTTCTAGGCGTGTTCTGGATGGAAAA
TAAATGGCTTCACTTTTTTGCCTGGGAAACGTGAGAGATTCTACTCTAGT
CCTTTGGGCTTTAAACTCGATGTTAAAAAAAACCCTACTGTGTATCCTTT
TCTTGAGTAATTGGTAAACTTTTAATTCTTAGGAGCTAAAACTGAAAAAG
AATTCATACATACCTCAAAAAGAAACTCGATTGAAATAAGATGTCAGATT
ACATCGTATTTGAGGGACCATTAACAAAATCACCACCGTTGAAAAAACAA
CACTTGGCTCGTTGGAAATATCGCTATTTTGTACTGTACGATACCTTTCC
TGATACCAACAAAGACGGGCGTCGAGTATTGAAATTGCTTTATTTTAAAA
GCAAAGAAGAGTCAAGGAATGGTAGCAAACCTCTTGGTATGACTTTTGTG
TGATGTCTTTTTTGTTGTAAAATTTCAGAATCACTCTGTTAAGCATAATT
AAGATTCTAAATAATATTCACAGATAGTTCCAGGGTCACTCAGGGAGCAA
AACTGGTAAAGGGACAATAAATNTAGGCCATAAAGGAAGAGTTAAAAACC
ATTGACTTCCAGGCCCGAAGGGCTAGACTCGAGACTCCTGGATGGGAAAT
GATGCCACTTATTTCCGATCCAGAACGCCCACGCGTGGTTTTTACACAAA
CGCCGGATTGAAAGTAAAATCTATCACTAGGCGCGTTCTAGGCGTGTTCT
GGATGGAAAATAAATGGCTTCACTTTTTTGCCTGGGAAACGTGAGAGATT
CTACTCTAGTCCTTTGGGCTTTAAACTCGATGTTAAAAAAAACCCTACTG
TGTATCCTTTTCTTGAGTAATTGGTAAACTTTTAATTCTTAGGAGCTAAA
ACTGAAAAAGAATTCATACATACCTCAAAAAGAAACTCGATTGAAATAAG
ATGTCAGATTACATCGTATTTGAGGGACCATTAACAAAATCACCACCGTT
GAAAAAACAACACTTGGCTCGTTGGAAATATCGCTATTTTGTACTGTACG
ATACCTTTCCTGATACCAACAAAGACGGGCGTCGAGTATTGAAATTGCTT
TATTTTAAAAGCAAAGAAGAGTCAAGGAATGGTAGCAAACCTCTTGGTAT
GACTTTTGTGTGATGTCTTTTTTGTTGTAAAATTTCAGAATCACTCTGTT
AAGCATAATTAAGATTCTAAATAATATTCACAGATAGTTCCAGGGTCACT
CAGGGAGCAAAACTGGGAAAGGGACAATAAACGAGGGGAACCAAATAATA
AGACTTTCTTTCAATCTTAAAAACTAGTTTCGAAAAAAAACAATTTTTGT
TCCTTTTCTTTTTCACTACAACTTTGAATCTTACTTTTAATCAAGGGTCA
ATCAATTTGCTGGAAGTTGAAGTGTTAGCTGTTTCTGACAAACCTGTGAA
CGGATACCCTTTTGTGCTCAACATTCATGCAAATGACAGAACATGGTATT
TATGCACCAGATCTTTCTATGATTTCATTGATTGGATAACTGTGTTGAAA
GAAAGAACAGATGCATTTCTAAAAGAGGTAAGTCCAATAAAAGTGAAGCT
GCCATGAACCTGCCACTGGGTGAAGCCGTGTTCATGGGCCTCGGCGAGCC
ATTTTGAGTAAGGGGGCCAACATTTTCGAAAAAAATGTCCCCCATCATGG
TTGCGCGACGAAGAAAATTTTTCACTTTTTACACCCTCAAAACACCTTAA
AAGGATTATCTAATTGGGGAGAATATAATTTTTGTGGTTTGATTTGGTCT
CAAACCAGCTTAAAATAGTAATTCTTAAAAACATATGCCATGGTCTACCA
AAAAGTGTACCCCCCCCCCCTTAACGGGGCCTATAGTAATGGTTTGATAC
TGGGGCTTCGCTCTTTACTCCCGTATGCGAGGTCCAAGCTCAATTCCCGA
ACTACGGTTCACTTAAATATCCCTTCGCCCGGGCCAACCAACATGTGAGA
GAAATTGGGTACAGCTACTCGGATACAAAAGCTAGAAAAGCTACGACCAA
AAGCGAAATCTACGACCGCAACGAGCTATATGCTCTCCGGCGTAGAGTTA
GAGTCTCATCACCATCTATCATTGTATCTATGTTTCCCATGCACATATCC
ATCACTGTCTGGACATTAGCTGCATTAGTTTTGCAAATTGAATTCTACTT
CATCAGGAGTAGGCCCCGTTTAGCAATAGGGCATATATTATTAACATGGT
GAAAATGGTAAAAACTCTGGACCTTTTTAAACCACCCCACAAGGTAATCA
CACATGTTATATTGTCATTTTTAGAGGGATAGACACACAACACATCGACG
TAACCAATATGAAATACAAAGAAAAAACAGCATAAGGTACTAAGAACCTT
ACACGTTCGTTGCCGTAATACAAGTATACTCATAGTAGAGGGGTCAAAAT
ACTAATGATACTTTGAAATGGAAAAAACATTTGGTAAAAAAATTTATCAC
TGCCTTTAATTGCATTTTTCGATTATTTGGTTAATATAATTTAAGATATG
ATAAAAGTTCACACTTTACAACACACACTACAATCATGGCCAAAATCTAT
TGAGAATTTAGTTTACTTCCTCGTTTTTCGAAATTTCAAGTTCGGGCGAG
AAAGTCGCTTTTGGGCTAATTGATAGATTTATTCGAGTATTTCAATTCGA
GAGGGGTTTATAGACTTCCGGACTATATTTTGAGCCTTATTGGACCATTT
TTGAACTTTTGGATCCTCAGATCCTAAGGTCTTCATAGGTCTTAAGTCCT
ATGTTAAAACTCAGAGTTTAAACTCTACCTTCCAACCTAAGTTAAAGCGC
TTCTAAATCGTTTGTGGCTATAAGATTTCGCAGGAATTTTCCTTTTTTCT
CAAATATTATGACCACGATTGTATGATTGTACATTACGTATCCTCTCATT
CTTATTATTATAGCACAGTTGAAAGTTCAACAACGTGCAGTTGGAGTCAT
ATGTCCAGAGATCGGCTAGATACGACAGATATTCATGAAATTCTTGAAGA
TCAAAATTTGTTTCCTGGTCGTCCTGCTCAAAAAGATGATAAGCATTCGG
GGTATGATACATGGCCCCGACGTTCAATGACAGTATCCCGATTCGGGAAC
ATTGATAACCGATATGAAACCGATTCCCTTACTTCATCTCATATTTACGA
GAAAATGGATATCCTTTGCCAAAACGATGCTCGAAGCTTTGCATCAGAAA
GCGAAAGTGTTTCCTTGTCCTCGCAAAGAGAAAGTGAAGAAAATCAATCA
CATTCTATAGAAAAAAGGCCTGGGAGCATACGATTCAGAACAATAAAAAG
TAGTATGAGGGCTTACAGAAGACACCGAAGCTTCGAGGAAAATCAGATCA
CCAGATTTCTTAGTGATGATCATCTTGTATTCAATATCTTTTTCCATAAA
TGAATTGATATTTGGACGGGATTACTTAAACAAGAGAACAATCAAATAAA
AATAGACGATAACGGACTCTTCTGGAAATATAATACACCCCTGTGACACA
GACCCACTGGGACCCAAGCCCCACTAGAAAATTTGGCAAAGATTTTGTCC
CCGGTGGGAAAATACCCTGAAATTTCAGCCCCGCTGGGAAATGGACTTGA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014966XLOC_014966Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026609-exon-sc0000576-1575043694:54290..54725TCONS_00026609-exon-sc0000576-1575043694:54290..54725Clytia hemisphaericaexon
TCONS_00026609-exon-sc0000576-1575043694:53149..53330TCONS_00026609-exon-sc0000576-1575043694:53149..53330Clytia hemisphaericaexon
TCONS_00026609-exon-sc0000576-1575043694:52340..52401TCONS_00026609-exon-sc0000576-1575043694:52340..52401Clytia hemisphaericaexon
TCONS_00026609-exon-sc0000576-1575043694:51075..51762TCONS_00026609-exon-sc0000576-1575043694:51075..51762Clytia hemisphaericaexon
TCONS_00026609-exon-sc0000576-1510915933:54290..54725TCONS_00026609-exon-sc0000576-1510915933:54290..54725Clytia hemisphaericaexon
TCONS_00026609-exon-sc0000576-1510915933:53149..53330TCONS_00026609-exon-sc0000576-1510915933:53149..53330Clytia hemisphaericaexon
TCONS_00026609-exon-sc0000576-1510915933:52340..52401TCONS_00026609-exon-sc0000576-1510915933:52340..52401Clytia hemisphaericaexon
TCONS_00026609-exon-sc0000576-1510915933:51075..51762TCONS_00026609-exon-sc0000576-1510915933:51075..51762Clytia hemisphaericaexon
TCONS_00026609-exon-sc0000576-1491911889:54290..54725TCONS_00026609-exon-sc0000576-1491911889:54290..54725Clytia hemisphaericaexon
TCONS_00026609-exon-sc0000576-1491911889:53149..53330TCONS_00026609-exon-sc0000576-1491911889:53149..53330Clytia hemisphaericaexon
TCONS_00026609-exon-sc0000576-1491911889:52340..52401TCONS_00026609-exon-sc0000576-1491911889:52340..52401Clytia hemisphaericaexon
TCONS_00026609-exon-sc0000576-1491911889:51075..51762TCONS_00026609-exon-sc0000576-1491911889:51075..51762Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000576supercontigsc0000576:51075..54725 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.243995	0	0.314839	0	0.077385	0.159756	0	0	5.29687	1.62525	0	0.0932663	0	0	3.07866	2.0135	0.147981	0	0	0	0	0.173445	0	0.134385	0.101926	0.0346156
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026609 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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