TCONS_00026571 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026571
Unique NameTCONS_00026571
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length827

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026571 ID=TCONS_00026571|Name=TCONS_00026571|organism=Clytia hemisphaerica|type=transcript|length=827bp
ACATTGAAATGATCTTAAGTCGATATGCAAGGAAATTGTTATCAAATTAT
TCATTGGTGGACCTTGGAACATTTGCTGCACATTTGGAGTTCGATCTAAC
GCCATGGCTCACGAAAGAAAGgtatacacactttttttataagagcatcc
atgATGAATTGgcaaattaagaatatgctaagattATCGCCATTAAACAG
AACATAAGActcaaaactttcacaaaaatgccattttacgCTTCAGgtaa
taagaaccagtaaagcTTTTCTGAGACtcattttttggcactttgagcct
caaactGTTCtcatcctgttcttatttataaggTGTAATTtaggtatttt
aggcgttatacccaatttttactactttaacccCTGAATTGATTgaattt
gagtaatttcaggctcagcaatgttcttaaattgttcttatttttaggcg
GTTTTGAGTCTCATTGTTCTTGtattataaaattattcttagATAAAAAA
GTGTACATGCAAAATTTAGGTTAAGatcgttaagaatatttttggatgaa
ttTCTCCTATAAGCtaagaatataaaaaaaataccatTCTTATGGAAGAA
AATATCCATTACTATAACCAGCTCTGTAATATTTTGACAGTAAACCTAAA
AGAAAGCAACTCCTTAGCTATGCTTATTAGTTcaccagccccccccccaa
cttCAATGATTGATAAGCCCAAAAGAGCCCAGTACACCCATTGAAGTTCG
gggaaaaaaaacatgtaaactATTATGTTTGCTGCTGAATATAGGACTGA
TTGTAGTAATTTATTCTAATATATGCG
Run BLAST on NCBI

transcript from alignment at sc0000575:189022..189848+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026571 ID=TCONS_00026571|Name=TCONS_00026571|organism=Clytia hemisphaerica|type=transcript|length=827bp|location=Sequence derived from alignment at sc0000575:189022..189848+ (Clytia hemisphaerica)
ACATTGAAATGATCTTAAGTCGATATGCAAGGAAATTGTTATCAAATTAT
TCATTGGTGGACCTTGGAACATTTGCTGCACATTTGGAGTTCGATCTAAC
GCCATGGCTCACGAAAGAAAGgtatacacactttttttataagagcatcc
atgATGAATTGgcaaattaagaatatgctaagattATCGCCATTAAACAG
AACATAAGActcaaaactttcacaaaaatgccattttacgCTTCAGgtaa
taagaaccagtaaagcTTTTCTGAGACtcattttttggcactttgagcct
caaactGTTCtcatcctgttcttatttataaggTGTAATTtaggtatttt
aggcgttatacccaatttttactactttaacccCTGAATTGATTgaattt
gagtaatttcaggctcagcaatgttcttaaattgttcttatttttaggcg
GTTTTGAGTCTCATTGTTCTTGtattataaaattattcttagATAAAAAA
GTGTACATGCAAAATTTAGGTTAAGatcgttaagaatatttttggatgaa
ttTCTCCTATAAGCtaagaatataaaaaaaataccatTCTTATGGAAGAA
AATATCCATTACTATAACCAGCTCTGTAATATTTTGACAGTAAACCTAAA
AGAAAGCAACTCCTTAGCTATGCTTATTAGTTcaccagccccccccccaa
cttCAATGATTGATAAGCCCAAAAGAGCCCAGTACACCCATTGAAGTTCG
gggaaaaaaaacatgtaaactATTATGTTTGCTGCTGAATATAGGACTGA
TTGTAGTAATTTATTCTAATATATGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014938XLOC_014938Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026571-exon-sc0000575-1491911889:189022..189848TCONS_00026571-exon-sc0000575-1491911889:189022..189848Clytia hemisphaericaexon
TCONS_00026571-exon-sc0000575-1510915933:189022..189848TCONS_00026571-exon-sc0000575-1510915933:189022..189848Clytia hemisphaericaexon
TCONS_00026571-exon-sc0000575-1575043694:189022..189848TCONS_00026571-exon-sc0000575-1575043694:189022..189848Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000575supercontigsc0000575:189022..189848 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0643651	0	0.0738032	0.447904	0.804147	0.502742	1.64505	1.43261	0.765134	1.05134	0.34209	0.852022	0.536403	0.610765	0.424341	0.276758	0.531932	0.297817	0.602461	0.611113	0.152707	0	0	0.0804163	0.0616357	0.110017	0.212348	0.316243	0.259401	0.0776838
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026571 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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