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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026570 ID=TCONS_00026570|Name=TCONS_00026570|organism=Clytia hemisphaerica|type=transcript|length=464bp
TCGCAGAGGCTCGTTGCTTAGACTGGGTCATCATTTTCACACTCATATTG
TGCGATTTGAATACTTTCAATCACGTGTTGGAGAAAGTGTCTGCTTTTAA
GGATATGACAAAATCGAGGCTGGACACGTTGATGTCTTCCCTGGAAGATC
TGAATGATTGGCTGGAAGAGAAATGCCCTGCATACCAACCACAATTAAGT
ACCATCATCGCCCACTGTGAAACTTTATACCAGTCTGTATCAACAGATGA
CGAAGTTTCGGCTTCATCCTCCCTCAAAAATGAAGAGATTTCCGAAAGCG
CCACGAAAACAGAAAATATTCTGAAGAGGGGAGATACGGAAGAGACACCC
GCCGAGTGTGAGCCAATGGATAAAGAGATGGAGAAAAATGAAGAGCAGGA
CTTAGGCGAGACGGAAGAGGAAGGGTGTGTCGTTTCTTAATTTATTTCTA
GAGATGGATCAGGC Run BLAST on NCBI protein sequence of TCONS_00026570-protein >TCONS_00026570-protein ID=TCONS_00026570-protein|Name=TCONS_00026570-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
AEARCLDWVIIFTLILCDLNTFNHVLEKVSAFKDMTKSRLDTLMSSLEDL
NDWLEEKCPAYQPQLSTIIAHCETLYQSVSTDDEVSASSSLKNEEISESA
TKTENILKRGDTEETPAECEPMDKEMEKNEEQDLGETEEEGCVVS Run BLAST on NCBI transcript from alignment at sc0000575:170910..172572+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026570 ID=TCONS_00026570|Name=TCONS_00026570|organism=Clytia hemisphaerica|type=transcript|length=1663bp|location=Sequence derived from alignment at sc0000575:170910..172572+ (Clytia hemisphaerica)
TCGCAGAGGCTCGTTGCTTAGACTGGGTCATCATTTTCACACTCATATTG
TGCGATTTGAATACTTTCAATCACGTGTTGGAGAAAGTGTCTGCTTTTAA
GGATATGACAAAATCGAGGCTGGACACGTTGATGTCTTCCCTGGAAGATC
TGAATGATTGGCTGGAAGAGAAATGGTATGTATGAAATCGTCGTCTACAT
AACTAAAGGTGCTCAAAATCagtgtcttggaaaattggaaatcttgcaat
TCTGTTCTGCCTTTGAGATTGGCCTTTTCGTCATATGAAAACATTGACTA
TTCCTCTGCATGAAAAAAGGACAATGTCAAAGATGACCACTAcagtaaaa
ctttaaattttgtgaGGTactaattttgagttttaacctTTAATCATGTG
AACGACGAAATGTTTACCAAGAGACCTGTTACTTGTTTATCTAATTTCTg
taataataagcagatattcaatatgTAGGTAGTAAGTCTACGatcgcagt
cggaggcgacccaaaggctcctcttttgatagctatctacccaaaggtag
gggagggcgccactctttctctctCTGGATTGCTCcgcttacccttgatc
cttcttttaattgctgagcatcaagcagagaggcatcaagtaccattttg
gggaatctttggtatgacccggatgggggttgaacccacaaccttgcgct
tTACTAATCTGTTCAATAGGTGAAAGGTAAAAATTCGAAGTCAAATTGAA
TACATATAAgtcaccgagggttaataacTCGAAaaaccaacgaaaaccta
ttgaatatatgttttacgATATACCTAGAAGTAAAAGCAAAATATTAATT
ATGTGAATAGTCGAAAGATTCACATAAAAACACTCCCATAATTGAACGTT
CGaatgtctttcttttttaatgattttcttcattaatttgagctaaaaaa
tttgttcatgaaatcgacaatagatttatttcaataaatttccttgaaat
ttgaaagcaaaatttgaagaaaaaaatctatcgTGAGAATCGCCGTAAAA
ATTGGTAGAATAGCCGTGATAAATAAGGAATTTCTTAATGTCTGTTTCTG
CCTATGGGTATCATATAATTCAAGAGATATTTCTCCTAATATAGTTCACA
CGATCATAGCTAAAGCGTATGACTTCACACGttcaatttttgaagctttg
ggatgttcttaattttttgagttttaagccctaaaatgttcttaacatgt
tcttattttcgtcattttttgagtatttttgtcaattttcccaaaaaaat
attgttgggGTTTCTCTATATCTGTGAATCTACTCTTGATAAACAGTGAT
TTAATGTTTTCCTTCTTATTCTAGCCCTGCATACCAACCACAATTAAGTA
CCATCATCGCCCACTGTGAAACTTTATACCAGTCTGTATCAACAGATGAC
GAAGTTTCGGCTTCATCCTCCCTCAAAAATGAAGAGATTTCCGAAAGCGC
CACGAAAACAGAAAATATTCTGAAGAGGGGAGATACGGAAGAGACACCCG
CCGAGTGTGAGCCAATGGATAAAGAGATGGAGAAAAATGAAGAGCAGGAC
TTAGGCGAGACGGAAGAGGAAGGGTGTGTCGTTTCTTAATTTATTTCTAG
AGATGGATCAGGC Coding sequence (CDS) from alignment at sc0000575:170910..172572+ >TCONS_00026570 ID=TCONS_00026570|Name=TCONS_00026570|organism=Clytia hemisphaerica|type=CDS|length=876bp|location=Sequence derived from alignment at sc0000575:170910..172572+ (Clytia hemisphaerica)
GCAGAGGCTCGTTGCTTAGACTGGGTCATCATTTTCACACTCATATTGTG
CGATTTGAATACTTTCAATCACGTGTTGGAGAAAGTGTCTGCTTTTAAGG
ATATGACAAAATCGAGGCTGGACACGTTGATGTCTTCCCTGGAAGATCTG
AATGATTGGCTGGAAGAGAAATGCCCTGCATACCAACCACAATTAAGTAC
CATCATCGCCCACTGTGAAACTTTATACCAGTCTGTATCAACAGATGACG
AAGTTTCGGCTTCATCCTCCCTCAAAAATGAAGAGATTTCCGAAAGCGCC
ACGAAAACAGAAAATATTCTGAAGAGGGGAGATACGGAAGAGACACCCGC
CGAGTGTGAGCCAATGGATAAAGAGATGGAGAAAAATGAAGAGCAGGACT
TAGGCGAGACGGAAGAGGAAGGGTGTGTCGTTTCTTAAGCAGAGGCTCGT
TGCTTAGACTGGGTCATCATTTTCACACTCATATTGTGCGATTTGAATAC
TTTCAATCACGTGTTGGAGAAAGTGTCTGCTTTTAAGGATATGACAAAAT
CGAGGCTGGACACGTTGATGTCTTCCCTGGAAGATCTGAATGATTGGCTG
GAAGAGAAATGCCCTGCATACCAACCACAATTAAGTACCATCATCGCCCA
CTGTGAAACTTTATACCAGTCTGTATCAACAGATGACGAAGTTTCGGCTT
CATCCTCCCTCAAAAATGAAGAGATTTCCGAAAGCGCCACGAAAACAGAA
AATATTCTGAAGAGGGGAGATACGGAAGAGACACCCGCCGAGTGTGAGCC
AATGGATAAAGAGATGGAGAAAAATGAAGAGCAGGACTTAGGCGAGACGG
AAGAGGAAGGGTGTGTCGTTTCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026570-exon-sc0000575-1491911889:170910..171084 | TCONS_00026570-exon-sc0000575-1491911889:170910..171084 | Clytia hemisphaerica | exon |
| TCONS_00026570-exon-sc0000575-1510915933:170910..171084 | TCONS_00026570-exon-sc0000575-1510915933:170910..171084 | Clytia hemisphaerica | exon |
| TCONS_00026570-exon-sc0000575-1575043694:170910..171084 | TCONS_00026570-exon-sc0000575-1575043694:170910..171084 | Clytia hemisphaerica | exon |
| TCONS_00026570-exon-sc0000575-1491911889:172284..172572 | TCONS_00026570-exon-sc0000575-1491911889:172284..172572 | Clytia hemisphaerica | exon |
| TCONS_00026570-exon-sc0000575-1510915933:172284..172572 | TCONS_00026570-exon-sc0000575-1510915933:172284..172572 | Clytia hemisphaerica | exon |
| TCONS_00026570-exon-sc0000575-1575043694:172284..172572 | TCONS_00026570-exon-sc0000575-1575043694:172284..172572 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000575 | supercontig | sc0000575:170910..172572 + |
Blast
The following BLAST results are available for this feature:
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