|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026567 ID=TCONS_00026567|Name=TCONS_00026567|organism=Clytia hemisphaerica|type=transcript|length=3577bpRun BLAST on NCBI protein sequence of TCONS_00026567-protein >TCONS_00026567-protein ID=TCONS_00026567-protein|Name=TCONS_00026567-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1018bp MGSICSMAWTPDGNALGTIWSKCGVAIWSVFGSLLMCVETSDFGGDVFHHRun BLAST on NCBI transcript from alignment at sc0000575:126273..212734+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026567 ID=TCONS_00026567|Name=TCONS_00026567|organism=Clytia hemisphaerica|type=transcript|length=86462bp|location=Sequence derived from alignment at sc0000575:126273..212734+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000575:126273..212734+ >TCONS_00026567 ID=TCONS_00026567|Name=TCONS_00026567|organism=Clytia hemisphaerica|type=CDS|length=82539bp|location=Sequence derived from alignment at sc0000575:126273..212734+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00026567 vs. Swiss-Prot (Human)
Match: RIC1 (RAB6A-GEF complex partner protein 1 OS=Homo sapiens GN=RIC1 PE=1 SV=2) HSP 1 Score: 713.375 bits (1840), Expect = 0.000e+0 Identity = 420/1182 (35.53%), Postives = 646/1182 (54.65%), Query Frame = 2
Query: 116 SEVYIEQIECSPVLGGYAVVFSDGRGGFLSSQTPEAKPSEIVGVFAKDLNNAICLSVNIKYQIIVFGQTNGQASAFIFDEATGGLVLSHKYILPKKDYPDEGVHMGSICSMAWTPDGNALGTIWSKCGVAIWSVFGSLLMCVETSDFG--GDVFHHEAITLSSLDWSIEGYEXXXXX---XXXDEPMDDHKSIY-EGDILSMKFVKSALAVNPCMSNRQHLFLQSDNSVYFNTGDV-MLQNGGNGIFGREQ-----------GGVNSPSMH--FSNKHWQTFPLPHNYIHTNWPIRYAAVDMSGKYFAVAGINGYAHFSLARRKWKLFGNETQERTVTCRGGLTWWNDYLIVGCFILNEDREEVRIHHRQDNLDVLLAQRISFQSPIFLINLYHNILMVYCSDCSVSFFRLQTVEASVHASRVTA--TKISETSLLDYLVHPITVTSISLSGLKDEQPXXXXXXXXXXXXXXLIANVAGRVLMLQKDKPAA---ERGSNK------ITFLPPVVIATCVENIWYMVNPVHSTKQHLAESLWFSCGANGMQAWLPLFPT--RRPLGFLSKRIMLDFPLNLYPLVVMFEDSVIIGIGNSDM--DEFTSTPTCPEK--ILFPYFNLERTTQVFLPQILRQLLRRNLGVHALDIARSCTNLPYFTHVLELMLHQVLEQEATASKPIPDPLLPRIVAFIQEFPQFLETVCHCARKTEIALWPHLFSTVGNPIELFKSCHTTGKLATAASYLLIIQSLESPAVSRQHATLLLETVLDKHNWSLAKDLVRFLRAIGKGE-ESPPRTPQSTYTHKSSFHQNMTSQSMTSPFSMSAPLNLEDSFSGSGQVKMPLSRQNSRTSMQTATTNTRATSVSKDRSSSVKETNKTRPPNLKLKRDDSRMSNSNLKSVNIESCEHFYIEMILSRYARKLLSNYSLVDLGTFAAHLEFDLTPWLTKERFRAACVDNFIRAMSYTHDYFEWDYP-----------KCNAVPTLGRGVSQISA-------------STLQSTSEIATPTTPIESELGYPNTTVDGEIEARLLSIRDENEPCDTFSDSVSIMTSLDEMSN-ADGRGNMA----ATSPPTMSEIMTVLDQKHHLVKHRSTEKLKYLLNVFAEARCLDWVIIFTLILCDLNTFNHVLEKVSAFKDMTKSRLDMLMSSLEDLNDW 3460
++V+I +E L G+AVVF+DG+ GF++ + ++ GV+ +D+ + C++VN KY+++ FG +G + D +TG ++LSHK L K YPD G++ M W+PD + + W G+++WSVFG+ L+C DF D + + ++S+ W EGY L ++ E D +S+ + IL +F+KS L VNPCMSN++ + LQ ++ +Y N G+ QN + E GG+ S + ++HW + Y+ +NWPIR++A+D G+ AV G G+AH+SL +KWKLFGN TQE+ + GGL WWND++++ C+ +N+ +EE+R++ R NLD A Q+ L++++ ++++V+ +DCS+ + ++E TA + E S+ Y+ HP V S++L+ + E +++ A S++ N+AG+++M+Q+D+ E+ SN + F PPVV+A VEN+W + K+HL E+LW SCG GM+ WLPLFP R+P FLS+RIML F +N+YPL V+FED++++G N + D + E+ +LFP+ +ERT+Q++L ILRQLL RNLG AL +A+SC LPYF HVLELMLH+VLE+EAT+ +PIPDPLLP + FI EFP FL+TV HCARKTE ALW +LF+ VGNP +LF+ C L TAASYL+I+Q++E PAVSRQHATLL T L++ W L + ++RFL+AIG GE E+PP TP T+Q E S SG + +N S+ + N A+ S ++ S+ + P + +D + E+ YI+M+L R+AR+LL + L DLG FAA L F+L WL KER RAA VDNF+ A+ H F W P K T+G + + + S +Q + + P E+ ++ +A L + ++ + C S+ T L E S+ DG M +T T SE+ + + H+S +L+YLL++F EA CLDW I+ LIL + + N +L ++ ++ L + + L ++ W
Sbjct: 202 TDVHIRDMEYCATLDGFAVVFNDGKVGFITPVSSRFTAEQLHGVWPQDVVDGTCVAVNNKYRLMAFGCVSGSVQVYTIDNSTGAMLLSHKLELTAKQYPDIWNKTGAVKLMRWSPDNSVVIVTWEYGGLSLWSVFGAQLICTLGGDFAYRSDGTKKDPLKINSMSWGAEGYHLWVISGFGSQNTEIESDLRSVVKQPSILLFQFIKSVLTVNPCMSNQEQVLLQGEDRLYLNCGEASQTQNPRSSSTHSEHKPSREKSPFADGGLESQGLSTLLGHRHWHVVQISSTYLESNWPIRFSAIDKLGQNIAVVGKFGFAHYSLLTKKWKLFGNITQEQNMIVTGGLAWWNDFMVLACYNINDRQEELRVYLRTSNLDNAFAHVTKAQAETLLLSVFQDMVIVFRADCSICLY---SIERKSDGPNTTAGIQVLQEVSMSRYIPHPFLVVSVTLTSVSTENGITLKMPQQARGAESIMLNLAGQLIMMQRDRSGPQIREKDSNPNNQRKLLPFCPPVVLAQSVENVWTTCR-ANKQKRHLLEALWLSCGGAGMKVWLPLFPRDHRKPHSFLSQRIMLPFHINIYPLAVLFEDALVLGAVNDTLLYDSLYTRNNAREQLEVLFPFCVVERTSQIYLHHILRQLLVRNLGEQALLLAQSCATLPYFPHVLELMLHEVLEEEATSREPIPDPLLPTVAKFITEFPLFLQTVVHCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEVPAVSRQHATLLFNTALEQGKWDLCRHMIRFLKAIGSGESETPPSTP--------------TAQ--------------EPSSSGGFEF-----FRNRSISLSQSAENVPASKFSLQKTLSM----PSGPSGKRWSKDS-------------DCAENMYIDMMLWRHARRLLEDVRLKDLGCFAAQLGFELISWLCKERTRAARVDNFVIALKRLHKDFLWPLPIIPASSISSPFKNGKYRTVGEQLLKSQSADPFLNLEMDAGISNIQRSQSWLSNIGPTHHEIDTASSHGPQMQDAFLSPLSNKGDEC-----SIGSATDLTESSSMVDGDWTMVDENFSTLSLTQSELEHISMELASKGPHKSQVQLRYLLHIFMEAGCLDWCIVIGLILRESSIINQIL-VITQSSEVDGEMLQNIKTGLHAVDRW 1323 The following BLAST results are available for this feature:
BLAST of TCONS_00026567 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2026, MARIMBA.