TCONS_00026556 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026556
Unique NameTCONS_00026556
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length383

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026556 ID=TCONS_00026556|Name=TCONS_00026556|organism=Clytia hemisphaerica|type=transcript|length=383bp
tccagTTGAATAAAGCTATATAAAATTTGAATGGAAATATAGTTGACACT
ACCATCTATGACATAGCTATATAAAATTACAATGCCAGTCATCTCCATAC
TAGCAAAAAATTGAAGCCATAATACATAGCAGCTGCGATTATGTATTTTC
CAATCGGTTGGCCAAAGTTTTACAACTCGCAATTACAAACTGGTAAAAAT
GATGTATTGAAAATTGTACGGTTCAACCGGTCAAGGTCCTTGTTTGTCAC
CATATCTGATTCAGCACTCTACCTGTGGAAAACAAGACCACGTGTTGTGT
TAGCAATTTGGTCACGTGACGAAAAACAAATTCATGATGAAGGGATCAAT
CAAAATATTTACTGGAACCCAAACTCCTCTATG
Run BLAST on NCBI

transcript from alignment at sc0000575:118078..118782+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026556 ID=TCONS_00026556|Name=TCONS_00026556|organism=Clytia hemisphaerica|type=transcript|length=705bp|location=Sequence derived from alignment at sc0000575:118078..118782+ (Clytia hemisphaerica)
tccagTTGAATAAAGCTATATAAAATTTGAATGGAAATATAGTTGACACT
ACCATCTATGACATAGCTATATAAAATTACAATGCCAGTCATCTCCATAC
TAGCAAAAAATTGAAGCCATAATACATAGCAGCTGCGATTATGTATTTTC
CAATCGGTTGGCCAAAGTTTTACAACTCGCAATTACAAACTGGTAAAAAT
GATGTATTGAAAATTGTACGGTTCAACCGGTCAAGGTCCTTGTTTGTCAC
CATATCTGATTCAGCACTCTACCTGTGGAAAACAAGAGTAAGTTTGCATA
ATGatataaaaattaaacaaaacacGTTGTTTTGGAAGAGCGAtttcttt
tttgtacttttattatgattttgtttgttttgttattCACAAGGAATGTA
TTTTGTCCCTTTCACCTTGATATTTATTGCAAAGTAATTGTTTTTATTCC
GTTCAATTCTCTAATTGGAACCTCTTGATCGACTCTTCTGTAATTTGCAA
TGAAACATTAATCACCTCAGCTTGAAAAGTCATATAAAAAGATGTACTGT
TTTTCAAATCTCtctctaatttgaagaaaattacaAGAAATTTTATCATC
AAATTCTAGCCACGTGTTGTGTTAGCAATTTGGTCACGTGACGAAAAACA
AATTCATGATGAAGGGATCAATCAAAATATTTACTGGAACCCAAACTCCT
CTATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014936XLOC_014936Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026556-exon-sc0000575-1491911889:118078..118364TCONS_00026556-exon-sc0000575-1491911889:118078..118364Clytia hemisphaericaexon
TCONS_00026556-exon-sc0000575-1510915933:118078..118364TCONS_00026556-exon-sc0000575-1510915933:118078..118364Clytia hemisphaericaexon
TCONS_00026556-exon-sc0000575-1575043694:118078..118364TCONS_00026556-exon-sc0000575-1575043694:118078..118364Clytia hemisphaericaexon
TCONS_00026556-exon-sc0000575-1491911889:118687..118782TCONS_00026556-exon-sc0000575-1491911889:118687..118782Clytia hemisphaericaexon
TCONS_00026556-exon-sc0000575-1510915933:118687..118782TCONS_00026556-exon-sc0000575-1510915933:118687..118782Clytia hemisphaericaexon
TCONS_00026556-exon-sc0000575-1575043694:118687..118782TCONS_00026556-exon-sc0000575-1575043694:118687..118782Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000575supercontigsc0000575:118078..118782 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.6415	8.94734	5.77151	4.51722	17.0478	9.99489	25.4275	26.9953	22.68	24.0492	19.2113	12.2214	15.8657	16.195	17.9456	22.4889	18.6737	21.0226	10.187	11.1136	13.9968	10.0965	17.5337	17.0033	24.7372	25.9848	29.0764	22.0798	15.1626	19.1374
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026556 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top