TCONS_00026555 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026555
Unique NameTCONS_00026555
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026555 ID=TCONS_00026555|Name=TCONS_00026555|organism=Clytia hemisphaerica|type=transcript|length=1507bp
AGAATATATAtgtattctttaaaatttagCAAGGAAAATTTTACTTATTA
GATAACTTTTGACCTAACCAATGAACCTGGTaattataaatgaaaaatat
ttttttagataaaaaatgaatataaaagtttgaaaacagatttgataaaa
attacTTACAAAAATGAAGTTGGCAAAagttcttttgatttttatcaatg
tttttgtttgcttATCCTTTGGGTTCTTTGTGTTAATGTTTAACCAGCTT
GGGCAACCTTTTGTCAGGGGATTCTACTGCAATGATGAAAGTATCAACAA
ACCGTTCAAGGAGAGTACCATTCCCTCTACGTTGGTTGTCATTATATCCT
GTATTCTTGGATTAGCTTGTTTCTTGTTTGCTGAATTTCTCAATTTTGTT
GCGCCTCAACCAAAGGAATCCGGATCTTTTGGAAGACGCTTATGCAGAGT
CAAGAAAATCGTTCTTGGGAATCTGACCATAACAATATTATGTTATGCAA
TGGGTATGGGAATCACAATGTTCATCACAGACATTGGAAAATATAGTGTT
GGCCGTTTGCGACcacatttttatgacgtttGTAAACCGGACTGGAGCAA
ATTGAATTGCACAAATACTGATGGTGtcgaaaattattttgttgGAAATG
ACTATTGTATGGATAAAGAAAATTCATGGAAATTTAAAGATGCAAGGCTG
TCATTCCCATCTGGACACTCTTCCTATTCTGCTTTTATTGCAACCTTTCT
GGTATTATACTTGGATCGATTTGTACAGTTATCAAACCCATTGATGCATT
TACCTAAATTTTTCATCCAAACAGGATTAGCTTCAGCTGCAATATACTGT
GGATTTTCACGCATATCTGATTACAAACATCATCCTACAGACGTCTTTGT
TGGTCTAACCATTGGATTCTTTGTTGGTTTGATTGTATTTTTCTACATTC
TGACAGGTTCTTGTTTGCCTTTATTGAAGCTGAAAGAACCAATTTCATTG
TCAGTAAATGGGGATGAGCCACAAAGTATAAAACATTATGGCACTTCTGG
CACAACACACCCAGATGAATTGTATCAAACTAGTGAAATTAATCAGCAAA
TCTAAAAAGAtgtattttttgcttaaaattattttttgtataaaagtgcc
taatattttgttaaagttctttattgtttataaactgtttatgatttttt
gtaaagttttgaatACTTATTATAGCAGTGTAGACAGGGaggggtgcaaa
atttgtgGAGGAGAGCATATTTTATGACACtctaattatctttttacatt
ATCATTACTATATTACTTATAATTACTGCTCTCCTACATAAATTTTGCGC
TCCTCCTGTCTAGGCTACTGTTTTAGATTAATACATCATTAGAATTTTGT
Acactctttttggacctaccccggtggggtagaggtcctttaaattaacc
gatgtccgtccgttcgttcgttcgtctgttcgttcgtccgtctgttacca
gctttNN
Run BLAST on NCBI

protein sequence of TCONS_00026555-protein

>TCONS_00026555-protein ID=TCONS_00026555-protein|Name=TCONS_00026555-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MKLAKVLLIFINVFVCLSFGFFVLMFNQLGQPFVRGFYCNDESINKPFKE
STIPSTLVVIISCILGLACFLFAEFLNFVAPQPKESGSFGRRLCRVKKIV
LGNLTITILCYAMGMGITMFITDIGKYSVGRLRPHFYDVCKPDWSKLNCT
NTDGVENYFVGNDYCMDKENSWKFKDARLSFPSGHSSYSAFIATFLVLYL
DRFVQLSNPLMHLPKFFIQTGLASAAIYCGFSRISDYKHHPTDVFVGLTI
GFFVGLIVFFYILTGSCLPLLKLKEPISLSVNGDEPQSIKHYGTSGTTHP
DELYQTSEINQQI
Run BLAST on NCBI

transcript from alignment at sc0000575:112875..114724+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026555 ID=TCONS_00026555|Name=TCONS_00026555|organism=Clytia hemisphaerica|type=transcript|length=1850bp|location=Sequence derived from alignment at sc0000575:112875..114724+ (Clytia hemisphaerica)
AGAATATATAtgtattctttaaaatttagCAAGGAAAATTTTACTTATTA
GATAACTTTTGACCTAACCAATGAACCTGGTaattataaatgaaaaatat
ttttttagataaaaaatgaatataaaagtttgaaaacagatttgataaaa
attacTTACAAAAATGAAGTTGGCAAAagttcttttgatttttatcaatg
tttttgtttgcttATCCTTTGGGTTCTTTGTGTTAATGTTTAACCAGCTT
GGGCAACCTTTTGTCAGGGGATTCTACTGCAATGATGAAAGTATCAACAA
ACCGTTCAAGGAGAGTACCATTCCCTCTACGTTGGTTGTCATTATATCCT
GTATTCTTGGATTAGCTTGTTTCTTGTTTGCTGAATTTCTCAATTTTGTT
GCGCCTCAACCAAAGGAATCCGGATCTTTTGGAAGACGCTTATGCAGAGT
CAAGAAAATCGTTCTTGGGAATCTGACCATAACAATATTATGTTATGCAA
TGGGTATGGGAATCACAATGTTCATCACAGACATTGGAAAATATAGTGTT
GGCCGTTTGCGACcacatttttatgacgtttGTAAACCGGACTGGAGCAA
ATTGAATTGCACAAATACTGATGGTGtcgaaaattattttgttgGAAATG
ACTATTGTATGGATAAAGAAAATTCATGGAAATTTAAAGATGCAAGGCTG
TCATTCCCATCTGGACACTCTTCCTATTCTGGTAaatgaacatttttatt
tgGTGTTTCCTAACAATAAGTTTTTCAGGAAgtagattaatgctgcgaat
gATGTACGTACTGTAAAGGcataagaaactttttgatcCTCAACAGAAat
actttatgtttttttttttcgtaagttttgacattttcaattttgaaact
tatACTTTTTGGTTGCTTTAGGATTTTAACTGGTATGAACTTTCAAGATC
TAAAtcgaaatatcaaaatattatgccaacaaaaaagtttttaagggCCT
TACTGTATATTAAGTATAGGTTTgccaaaatatcaaagaaaattttaata
tctttattataatattattttcagCTTTTATTGCAACCTTTCTGGTATTA
TACTTGGATCGATTTGTACAGTTATCAAACCCATTGATGCATTTACCTAA
ATTTTTCATCCAAACAGGATTAGCTTCAGCTGCAATATACTGTGGATTTT
CACGCATATCTGATTACAAACATCATCCTACAGACGTCTTTGTTGGTCTA
ACCATTGGATTCTTTGTTGGTTTGATTGTATTTTTCTACATTCTGACAGG
TTCTTGTTTGCCTTTATTGAAGCTGAAAGAACCAATTTCATTGTCAGTAA
ATGGGGATGAGCCACAAAGTATAAAACATTATGGCACTTCTGGCACAACA
CACCCAGATGAATTGTATCAAACTAGTGAAATTAATCAGCAAATCTAAAA
AGAtgtattttttgcttaaaattattttttgtataaaagtgcctaatatt
ttgttaaagttctttattgtttataaactgtttatgattttttgtaaagt
tttgaatACTTATTATAGCAGTGTAGACAGGGaggggtgcaaaatttgtg
GAGGAGAGCATATTTTATGACACtctaattatctttttacattATCATTA
CTATATTACTTATAATTACTGCTCTCCTACATAAATTTTGCGCTCCTCCT
GTCTAGGCTACTGTTTTAGATTAATACATCATTAGAATTTTGTAcactct
ttttggacctaccccggtggggtagaggtcctttaaattaaccgatgtcc
gtccgttcgttcgttcgtctgttcgttcgtccgtctgttaccagctttNN

Coding sequence (CDS) from alignment at sc0000575:112875..114724+

>TCONS_00026555 ID=TCONS_00026555|Name=TCONS_00026555|organism=Clytia hemisphaerica|type=CDS|length=1884bp|location=Sequence derived from alignment at sc0000575:112875..114724+ (Clytia hemisphaerica)
ATGAAGTTGGCAAAagttcttttgatttttatcaatgtttttgtttgctt
ATCCTTTGGGTTCTTTGTGTTAATGTTTAACCAGCTTGGGCAACCTTTTG
TCAGGGGATTCTACTGCAATGATGAAAGTATCAACAAACCGTTCAAGGAG
AGTACCATTCCCTCTACGTTGGTTGTCATTATATCCTGTATTCTTGGATT
AGCTTGTTTCTTGTTTGCTGAATTTCTCAATTTTGTTGCGCCTCAACCAA
AGGAATCCGGATCTTTTGGAAGACGCTTATGCAGAGTCAAGAAAATCGTT
CTTGGGAATCTGACCATAACAATATTATGTTATGCAATGGGTATGGGAAT
CACAATGTTCATCACAGACATTGGAAAATATAGTGTTGGCCGTTTGCGAC
cacatttttatgacgtttGTAAACCGGACTGGAGCAAATTGAATTGCACA
AATACTGATGGTGtcgaaaattattttgttgGAAATGACTATTGTATGGA
TAAAGAAAATTCATGGAAATTTAAAGATGCAAGGCTGTCATTCCCATCTG
GACACTCTTCCTATTCTGCTTTTATTGCAACCTTTCTGGTATTATACTTG
GATCGATTTGTACAGTTATCAAACCCATTGATGCATTTACCTAAATTTTT
CATCCAAACAGGATTAGCTTCAGCTGCAATATACTGTGGATTTTCACGCA
TATCTGATTACAAACATCATCCTACAGACGTCTTTGTTGGTCTAACCATT
GGATTCTTTGTTGGTTTGATTGTATTTTTCTACATTCTGACAGGTTCTTG
TTTGCCTTTATTGAAGCTGAAAGAACCAATTTCATTGTCAGTAAATGGGG
ATGAGCCACAAAGTATAAAACATTATGGCACTTCTGGCACAACACACCCA
GATGAATTGTATCAAACTAGTGAAATTAATCAGCAAATCTAAATGAAGTT
GGCAAAagttcttttgatttttatcaatgtttttgtttgcttATCCTTTG
GGTTCTTTGTGTTAATGTTTAACCAGCTTGGGCAACCTTTTGTCAGGGGA
TTCTACTGCAATGATGAAAGTATCAACAAACCGTTCAAGGAGAGTACCAT
TCCCTCTACGTTGGTTGTCATTATATCCTGTATTCTTGGATTAGCTTGTT
TCTTGTTTGCTGAATTTCTCAATTTTGTTGCGCCTCAACCAAAGGAATCC
GGATCTTTTGGAAGACGCTTATGCAGAGTCAAGAAAATCGTTCTTGGGAA
TCTGACCATAACAATATTATGTTATGCAATGGGTATGGGAATCACAATGT
TCATCACAGACATTGGAAAATATAGTGTTGGCCGTTTGCGACcacatttt
tatgacgtttGTAAACCGGACTGGAGCAAATTGAATTGCACAAATACTGA
TGGTGtcgaaaattattttgttgGAAATGACTATTGTATGGATAAAGAAA
ATTCATGGAAATTTAAAGATGCAAGGCTGTCATTCCCATCTGGACACTCT
TCCTATTCTGCTTTTATTGCAACCTTTCTGGTATTATACTTGGATCGATT
TGTACAGTTATCAAACCCATTGATGCATTTACCTAAATTTTTCATCCAAA
CAGGATTAGCTTCAGCTGCAATATACTGTGGATTTTCACGCATATCTGAT
TACAAACATCATCCTACAGACGTCTTTGTTGGTCTAACCATTGGATTCTT
TGTTGGTTTGATTGTATTTTTCTACATTCTGACAGGTTCTTGTTTGCCTT
TATTGAAGCTGAAAGAACCAATTTCATTGTCAGTAAATGGGGATGAGCCA
CAAAGTATAAAACATTATGGCACTTCTGGCACAACACACCCAGATGAATT
GTATCAAACTAGTGAAATTAATCAGCAAATCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014935XLOC_014935Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026555-proteinTCONS_00026555-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026555-exon-sc0000575-1491911889:112875..113605TCONS_00026555-exon-sc0000575-1491911889:112875..113605Clytia hemisphaericaexon
TCONS_00026555-exon-sc0000575-1510915933:112875..113605TCONS_00026555-exon-sc0000575-1510915933:112875..113605Clytia hemisphaericaexon
TCONS_00026555-exon-sc0000575-1575043694:112875..113605TCONS_00026555-exon-sc0000575-1575043694:112875..113605Clytia hemisphaericaexon
TCONS_00026555-exon-sc0000575-1491911889:113949..114724TCONS_00026555-exon-sc0000575-1491911889:113949..114724Clytia hemisphaericaexon
TCONS_00026555-exon-sc0000575-1510915933:113949..114724TCONS_00026555-exon-sc0000575-1510915933:113949..114724Clytia hemisphaericaexon
TCONS_00026555-exon-sc0000575-1575043694:113949..114724TCONS_00026555-exon-sc0000575-1575043694:113949..114724Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000575supercontigsc0000575:112875..114724 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.07467	6.75672	4.95158	6.78523	8.76426	6.32054	5.37648	7.53365	5.89529	5.82006	6.14754	3.83064	3.92646	4.16677	4.03529	4.44689	5.45792	5.99134	4.76505	6.74421	6.87303	7.57934	8.11477	9.71438	5.34094	6.12352	34.5551	27.1187	7.64494	6.02719
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000326P_Acid_Pase_2/haloperoxidase
Blast
[Close]
BLAST of TCONS_00026555 vs. Swiss-Prot (Human)
Match: PLPP1 (Phospholipid phosphatase 1 OS=Homo sapiens GN=PLPP1 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 3.680e-43
Identity = 101/286 (35.31%), Postives = 145/286 (50.70%), Query Frame = 2 
Query:  188 IFINVFVCLSFGFFVLMFNQLGQPFVRGFYCNDESINKPFKESTIPSTLVVIISCILGLACFLFAEFLNFVAPQPKESGSFGRRLCRVKKIVLGNLTITILCYAMGMGITMFITDIGKYSVGRLRPHFYDVCKPDWSKLNCTNTDGVENYFVGNDYCMDKENSWKFKDARLSFPSGHSSYSAFIATFLVLYLDRFVQLSNPLMHLPKFFIQTGLASAAIYCGFSRISDYKHHPTDVFVGLTIGFFVGLIVFFYILT--GSCLPLLKLKEPISLSVNGDEPQSIKHY 1039
            + ++V   L  G    +      PF RG +CNDESI  P+KE TIP  L+  I     +   +  E L+ V      S SF      ++   +  +   I  +  G   +  +TDI KYS+GRLRPHF DVC PDWSK+NC  +DG   Y++    C  + N+ + K+ RLSF SGHSS+S +   F+ LYL    ++      L +  +Q GL + +IY G SR+SDYKHH +DV  GL  G  V ++V  Y+           + KE  S +   + P +  HY
Sbjct:   10 VALDVLCVLLAGLPFAILTSRHTPFQRGVFCNDESIKYPYKEDTIPYALLGGIIIPFSIIVIILGETLS-VYCNLLHSNSF------IRNNYIATIYKAIGTFLFGAAASQSLTDIAKYSIGRLRPHFLDVCDPDWSKINC--SDGYIEYYI----C--RGNAERVKEGRLSFYSGHSSFSMYCMLFVALYLQ--ARMKGDWARLLRPTLQFGLVAVSIYVGLSRVSDYKHHWSDVLTGLIQGALVAILVAVYVSDFFKERTSFKERKEEDSHTTLHETPTTGNHY 278
The following BLAST results are available for this feature:
BLAST of TCONS_00026555 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLPP13.680e-4335.31Phospholipid phosphatase 1 OS=Homo sapiens GN=PLPP... [more]
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