TCONS_00026549 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026549
Unique NameTCONS_00026549
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1216

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026549 ID=TCONS_00026549|Name=TCONS_00026549|organism=Clytia hemisphaerica|type=transcript|length=1216bp
ATACAACGAAACACAAAGACAcgaaaatttttaagaataagaaattttat
tacGAAGATTTATTTTATTGACGAAATGAAGCATTTAGCTTCTTTTCTTC
TTGCTACTGGTTTAGCATTGACTGTTGGAGCTCCAACAAAATATTCGACC
ACACCATTCCAAACGCAACCTACAAGAGCACCACATGCATGTCAAGCAAA
CGATTTATGTACGAAAGCGGGAGTATATGTTTACGACAAGGATGATCGTT
ATTTCTTCGTATGCGCTGATGTCAACCTCAACTCTGGTTGTCAAAAATGT
CCTTCTGATGACACCAAATATTCACTCAAATGTGAAGCCTGTCTTCCAAG
GGCAGATGTAAACGATCCAAACTTGCAATGTCCACCTAAAGACAACAATA
AAGGAGGTGCTGATAATTGTGCACCAAAGGACTTTTGTAAAGACCGTATG
GACGGTAAACACGCAGCACCCGGCGATAACACCAAATTCTTCTCTTGTTC
ACATTACCAAAGTACTCCATGTCAACCATGTCCTGGTGGCCTCGTTTTCG
ATGAAGCATGCCAGAGCTGTAAACGAGAGTCTGAAGTTTGCTTAAACCCA
CCCACACAAgcaccaacaaaaacaaaaacaacaacgaCAACGAAAGCTCC
AACGACACAAGCTGCTCCTACTACAACGACAACGACTGAAGAACCGACGA
CACAAGCTGCACCAACAACGACAACTCAAGCACCAACAACAACGACTGAA
GCTCCAACAACGACCACCACTGAAGCACCATCCACACAAGCTGCACCCAC
TACAACAACGACAACTGAAGCTCCGACCACAACTACAGTAGCACCAACGC
AAGCTAAACAACCTTGTCCACCATCACCAGACTTTTGTGCAGATAAACCA
AACAGAATGTTTGCAAACCCTTATGACGAAACTGTCTTTTTCCACTGTGA
TAATAAAAAAGCTTCACTATGCCAACCGTGTCCTGGAGGATTAAAATTCT
ACGAAATCTGTCAAAACTGTCTTTTCCCTGGAAGCGACACCAgCAAATGT
GGTAAAGCTACAACAACACAAGCTGCCCCGAAGACAACGCAACCAGCACC
AGAGACAACTCAGGCTGCCCCGAAGACAACGCAACCAACCTCTGCACCTG
TTTGTCCACCAGAAAACTTCTGTAATGATAAACAAGATGGAAAATACGCC
AACCCAAAAAATCCAC
Run BLAST on NCBI

transcript from alignment at sc0000575:18672..24060+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026549 ID=TCONS_00026549|Name=TCONS_00026549|organism=Clytia hemisphaerica|type=transcript|length=5389bp|location=Sequence derived from alignment at sc0000575:18672..24060+ (Clytia hemisphaerica)
ATACAACGAAACACAAAGACAcgaaaatttttaagaataagaaattttat
tacGAAGATTTATTTTATTGACGAAATGAAGCATTTAGCTTCTTTTCTTC
TTGCTACTGGTTTAGCATTGACTGGTGAGTTTGCTTTTCTTATTACTTTA
TCCGGATGTATAATATTGTATACACTATGGAGATAATTGTCTACACATGC
ACAGTGGAAGGAAACGATATAGAACTATTGTTTGCAAAAGTAGAGGAGTT
TAGCAGCGGATACAAGAAATTATAACGTTGCAACTGCATACTTCTATGTT
TCTTGATAGAGCTTGCAGCTATCGTGACAAAAATTAATGATGAtagtgtg
atttttttgttgttcACGCAAGCttatgtcaaattttgtaacgacaaatt
tgtaaaatttaaaatttgttcaGGGAACTTATTACCAAGAGCTAAGTTCT
TCGTAAAATTAGAAATATTTATTGCTTTGTCAATATAATAGTTCACTTAA
GAATTTAACCACAGTATTTTCTGTTATCTTAGCTTTCTTGACagtttttc
gtgaaaatttacttCTTTGTTAATTTGTTTTTAGTTGGAGCTCCAACAAA
ATATTCGACCACACCATTCCAAACGCAACCTACAAGAGCACCACATGCAT
GTAAGTATCATGGTTAATATTTAGTAACCTCTAAGCCAAAATTACTTCTG
TAGCACCAAGCTTTACCAAAGAGACTGGAAGTCGTGAAAAAGTATTATAT
GCGGAATGTTGGTCTCACGATTTACAGTAAATGTTGGTAAAATAATCAAA
TGTTTGAAACACCGTAGACAAAAAGCCATGTATTTAGAAAAAAGACAATT
TAGTTCCCATGGATACAAAAAATAATCAGATGattaataacaataaaaaa
cCCACATTTTGGTCATTAAGCACCTGATTAAATTAACTCGAATTAAGTAA
GATTTAATTAGAGGGAAGAATGACAATAATTACAAGCGACACCCTTCACG
AGTAGGAACGAAACTAAAACCTCTGTATATTGGAACAACTTCTAAGTGAT
TACGGACATAAACACATTTCGTCATGACCCTTTgatagaaaatttaaaaa
tatttcttattcaTTAATTTTCACCCTCAAATATTTAATAAGGTTTTATT
CCTACTAAGTCATCGCCAGTCAAAATAAAGAGATTTTTTCCTGGATATCC
GGATCTAAAGATTCGATAGCCTACTTGATTAGCCGATCAATACAGGACAA
TTTGACATTCTATTTCCACGGGTCCCATGAGAATAGGAACCAGTTTGGCT
ATTCATGAATTGAACATAAGGAGTATAAGTGTTTGCTTGCTCCGGGTGGG
GGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNGGGCTGGGTGGGATATGTGCGTGC
TTTATGGTTCGGATTTCTCACCTTACAAAGTCTGTCTAAGAGTTGcagaa
atcagaaaattttgaactAGTCTCACTAGGGACGCACACCCAACACTCAT
AAATCTTAGGCCTCCACTCTCACCCCGTTTGCTTGGTACAGTGAGACTAT
TTTTCCAAATAAATGTATAAAAGACTTACACCAGTATTTGATTACAACAC
CAGGTCAAGCAAACGATTTATGTACGAAAGCGGGAGTATATGTTTACGAC
AAGGATGATCGTTATTTCTTCGTATGCGCTGATGTCAACCTCAACTCTGG
TTGTCAAAAATGTCCTTCTGATGACACCAAATATTCACTCAAATGTGAAG
CCTGTCTTCCAAGGGCAGATGGTAAGTTGGAAACACTGTATAACAGACAA
ATTGCGTTTATTATTGCCTTTGTACAGTTTTATTGCACGTTGAAATCAAA
CGTCCTTAGTTTCTGTTATCATTGACGATTgtctaaaaaagaaaacttag
TGTGTTTGTGATTTCAGAGAAGAAGTATTAAACCCGATAGGATCTTTTCA
GCCTCGTTTATTCGAGTATTCTCagcaggggataaaaattagAGCGTAAT
CtttcactggggacgatattttggccaattcttCCAGTGGAGAAGGGTCT
CAattggtctgtgagaaggggtttcACAATCAATGAATAATCAAATCTCA
TCTTTGTATTTTTGCAGTAAACGATCCAAACTTGCAATGTCCACCTAAAG
ACAACAATAAAGGAGGTGCTGATAATTGTAAGTAAAAGATTCGCAACGTT
ATTGAacatgttttttcttgaaaaatgaacACATGAACCAGTCAAAATTG
ATACAGTGGAtactctccataactcgaacatgcaAGAGGAGCACAAATTT
GTTCatgttaaggaaatttcgagttacgggTAAAGCTTATAAGGCACTGT
TAattgaagggaccataaaacttgatcgagttaaggagacattcgagtta
taaaggttcgagttgaagagactccactgtactgAAAATCACTCTTCTTG
AGATTGACGGAAGAAtcgttttgatttgatttgctTCTTTACCGTAAAGT
ATTTTAGAATATCGCTTCCGTCGAAgctatttatatcaaaatttgcGCAG
TCGGACAACGaaacttttctcaaaaatccaatACTTTATAGTTCAACTTA
TTTTGTTGTATTCTGATCATCTACATTTGAAGGCAAATCTATAACCCTCC
TTGATACCAAGCCTTTACTAGAAAACTAATTGACTTTTCTTTCAACCACT
CAACAGGTGCACCAAAGGACTTTTGTAAAGACCGTATGGACGGTAAACAC
GCAGCACCCGGCGATAACACCAAATTCTTCTCTTGTTCACATTACCAAAG
TACTCCATGTCAACCATGTCCTGGTGGCCTCGTTTTCGATGAAGCATGCC
AGAGCTGTAAACGAGAGTCTGAAGGTTGGTAATATTCTAAAAAAGGGTCT
AAAAGTTAAGAGACTAAGAAATTTCATGTATATCGATGGGTATTTTGTGA
TGAGGTTTAAAACAAGATAATTGTATGAAGCAAAGCTTCTTTTTGGAAAG
AGGAGAAGTTTCTTTCAACGCTTATTTATCAAGCTTTCCCAATTAAGTAC
ACTATACTCGATTACGAAAGGGCTTCTAATCGAAATGCACATTCAAAATC
ATCTGCCTTACCAAAAGAAAGTTTCTTTAAGTAAAAATATAGAGaattcc
attccacccaatagctgattggttgaaagtgacgtattgactgattttac
gttaCTTATAACCAATCAACTATTGGgtctgtgatgtaatgtcagaagac
attgcagtggtgcatatcatgaattagcaAGCACCTCACTGAAAACCGGG
ATTCtttatctcgtttcttagtgagttccacttttaCTAAgttctatttt
ttgaaaagcctttcaagtgcgctttgacgcaaattcgattatttcgCTAC
TGCAAGAGCTTGAATGCTAAAAGTGACGTCATAAAATCGACTGTTTAGAG
AAaaccaaacattcgaaaaaagtcgcaaagtggaatagacgttaattgcg
tagaaaaaacgcgggcgacgtctagtataggctaataGAGAATCATCATC
GTCCACTTTTCATATTCAGTTTGCTTAAACCCACCCACACAAgcaccaac
aaaaacaaaaacaacaacgaCAACGAAAGCTCCAACGACACAAGCTGCTC
CTACTACAACGACAACGACTGAAGAACCGACGACACAAGCTGCACCAACA
ACGACAACTCAAGCACCAACAACAACGACTGAAGCTCCAACAACGACCAC
CACTGAAGCACCATCCACACAAGCTGCACCCACTACAACAACGACAACTG
AAGCTCCGACCACAACTACAGTAGCACCAACGCAAGCTAAACAACCTTGT
AAGTTTGTCTcaagttttttataataactctttgaaaagatttgagctag
taaaaatataataatttcAGTCAGTAACATATTCAGAGATAAAATAATGG
AAGGCTTGCAAAAAGAAACTACAAACCTCACTCCTTAATCTGATAAGGGT
TCTTATTGTGTTGTCTTTTCCATCAAACTaatcatttttatgtttttcac
aACTTTCAGGTCCACCATCACCAGACTTTTGTGCAGATAAACCAAACAGA
ATGTTTGCAAACCCTTATGACGAAACTGTCTTTTTCCACTGTGATAATAA
AAAAGCTTCACTATGCCAACCGTGTCCTGGAGGATTAAAATTCTACGAAA
TCTGTCAAAACTGTCTTTTCCCTGGAAGCGACACCAGTACGTATTACAGT
TACCTGTCTCGaattcgatctttaagggaCGAAGAGTTTTTTCAGACTTA
GAGAAAGATTCCAATTATTAGAGAGCATTTTATATTACTTTCTACAGAAA
GACtcaaataatagaagttcgNACCAATTATAGAGATCACTTTATATTAC
TTTCTACAGAAAGACTCAAATAATAGAAGTTTGAATTAGAGAGGGTCCAC
TGCATCTAATTTGGAAACAAACAAAGTATAAGATGTCTATATAAAAACTT
GTCCGCTTTTTTTGGGCCATAATACACCAGATCAATGAAGcttattgaaa
tttgaaaatatcatttaaaaattgttttaggCAAATGTGGTAAAGCTACA
ACAACACAAGCAGCCCCGAAGACAACGCAACCAGCACCAGAAACAACTCA
GGCTGCCCCAAAGACAACGCAACCAGCACCAGAGACAACTCAGGCTGCCC
CGAAGACAACGCAACCAGCACCAGAGACAACTCAGGCTGCCCCGAAGACA
ACGCAACCAACCTCTGCACCTGTTTGTAAGTTATGCAAtaagttattttt
taaattaagtaagaaaataaataaaataaggaGCAATCAGTCTAAATTGG
GAATTCGTctttaattaaataaaaaaattggccTGAGTCTCTCAAAATAA
TGCTAAAATACAAGAACAGTATATAAATGTTCGTTTGGAGGCCCACTGTC
AGTATAGCTTGTAATTCTGAATAattatttgaaatgttttatcGCTGGGT
TAACTTCCATTGAgacatattttttaaacatttacatTACAATAAATTCG
ACTGACAATTCTAACTTATTGTGAAAAGACGTAAACATTTACATGTgaaa
taataatttctttatttcgaCATTAGGTCCACCAGAAAACTTCTGTAATG
ATAAACAAGATGGAAAATACGCCAACCCAAAAAATCCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014932XLOC_014932Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026549-exon-sc0000575-1491911889:18672..18795TCONS_00026549-exon-sc0000575-1491911889:18672..18795Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1510915933:18672..18795TCONS_00026549-exon-sc0000575-1510915933:18672..18795Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1575043694:18672..18795TCONS_00026549-exon-sc0000575-1575043694:18672..18795Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1491911889:19256..19321TCONS_00026549-exon-sc0000575-1491911889:19256..19321Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1510915933:19256..19321TCONS_00026549-exon-sc0000575-1510915933:19256..19321Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1575043694:19256..19321TCONS_00026549-exon-sc0000575-1575043694:19256..19321Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1491911889:20475..20642TCONS_00026549-exon-sc0000575-1491911889:20475..20642Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1510915933:20475..20642TCONS_00026549-exon-sc0000575-1510915933:20475..20642Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1575043694:20475..20642TCONS_00026549-exon-sc0000575-1575043694:20475..20642Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1491911889:20989..21048TCONS_00026549-exon-sc0000575-1491911889:20989..21048Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1510915933:20989..21048TCONS_00026549-exon-sc0000575-1510915933:20989..21048Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1575043694:20989..21048TCONS_00026549-exon-sc0000575-1575043694:20989..21048Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1491911889:21578..21745TCONS_00026549-exon-sc0000575-1491911889:21578..21745Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1510915933:21578..21745TCONS_00026549-exon-sc0000575-1510915933:21578..21745Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1575043694:21578..21745TCONS_00026549-exon-sc0000575-1575043694:21578..21745Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1491911889:22441..22719TCONS_00026549-exon-sc0000575-1491911889:22441..22719Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1510915933:22441..22719TCONS_00026549-exon-sc0000575-1510915933:22441..22719Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1575043694:22441..22719TCONS_00026549-exon-sc0000575-1575043694:22441..22719Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1491911889:22931..23107TCONS_00026549-exon-sc0000575-1491911889:22931..23107Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1510915933:22931..23107TCONS_00026549-exon-sc0000575-1510915933:22931..23107Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1575043694:22931..23107TCONS_00026549-exon-sc0000575-1575043694:22931..23107Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1491911889:23452..23480TCONS_00026549-exon-sc0000575-1491911889:23452..23480Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1510915933:23452..23480TCONS_00026549-exon-sc0000575-1510915933:23452..23480Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1575043694:23452..23480TCONS_00026549-exon-sc0000575-1575043694:23452..23480Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1491911889:23565..23646TCONS_00026549-exon-sc0000575-1491911889:23565..23646Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1510915933:23565..23646TCONS_00026549-exon-sc0000575-1510915933:23565..23646Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1575043694:23565..23646TCONS_00026549-exon-sc0000575-1575043694:23565..23646Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1491911889:23998..24060TCONS_00026549-exon-sc0000575-1491911889:23998..24060Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1510915933:23998..24060TCONS_00026549-exon-sc0000575-1510915933:23998..24060Clytia hemisphaericaexon
TCONS_00026549-exon-sc0000575-1575043694:23998..24060TCONS_00026549-exon-sc0000575-1575043694:23998..24060Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000575supercontigsc0000575:18672..24060 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0354688	0	0.0510781	0	0	0	0	0	0	0	0.0837157	0	0	0	0	1.81356e-08	3.96075	0.000214358	0	0	0	0	0	0.129883	0	0	0	2.37643e-06	0.0390195	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026549 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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