TCONS_00026538 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026538
Unique NameTCONS_00026538
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026538 ID=TCONS_00026538|Name=TCONS_00026538|organism=Clytia hemisphaerica|type=transcript|length=288bp
ATTGGTAAAGAGATGCATAAATAACAGCACCCGATATTAAAATACCCTGG
GTTACTTCGTCATGGAGGAGAGACCACGATATCATCAGGGCCTACCAGAG
ATAAAGAAGCGGCCTTGCCTCCAAACGACCTAAAGTGAACCCCATAAGGA
TAAGAAACtgtatttttctggaaaagcccaatgttccttgctttttggac
ctacctaaggtagtcctttaaattaacccttgtccgttcgttcgttcgtc
cgttcgtccgttcgttcgttcgttcgtctgttgccagc
Run BLAST on NCBI

transcript from alignment at sc0000574:71085..71372

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026538 ID=TCONS_00026538|Name=TCONS_00026538|organism=Clytia hemisphaerica|type=transcript|length=288bp|location=Sequence derived from alignment at sc0000574:71085..71372 (Clytia hemisphaerica)
gctggcaacagacgaacgaacgaacgaacggacgaacggacgaacgaacg
aacggacaagggttaatttaaaggactaccttaggtaggtccaaaaagca
aggaacattgggcttttccagaaaaatacaGTTTCTTATCCTTATGGGGT
TCACTTTAGGTCGTTTGGAGGCAAGGCCGCTTCTTTATCTCTGGTAGGCC
CTGATGATATCGTGGTCTCTCCTCCATGACGAAGTAACCCAGGGTATTTT
AATATCGGGTGCTGTTATTTATGCATCTCTTTACCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014925XLOC_014925Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026538-exon-sc0000574-1491911889:71085..71372TCONS_00026538-exon-sc0000574-1491911889:71085..71372Clytia hemisphaericaexon
TCONS_00026538-exon-sc0000574-1510915933:71085..71372TCONS_00026538-exon-sc0000574-1510915933:71085..71372Clytia hemisphaericaexon
TCONS_00026538-exon-sc0000574-1575043694:71085..71372TCONS_00026538-exon-sc0000574-1575043694:71085..71372Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000574supercontigsc0000574:71085..71372 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.39269	1.61262	4.70453	2.39978	1.55775	0.64307	1.2502	0	1.00479	0	0.636621	2.9661	0.62812	0.276391	0.286744	0.366787	0	0.523886	1.63172	0	1.61616	0	0.473583	3.45086	1.93084	0	0	0	0.55087
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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