TCONS_00026527 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00026527
Unique Name	TCONS_00026527
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2127

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000574:79791..85072-

transcript sequence

>TCONS_00026527 ID=TCONS_00026527|Name=TCONS_00026527|organism=Clytia hemisphaerica|type=transcript|length=2127bp
GCATGATTGTTCACATTTCCCAGTATTTTAatcatgttttgattttgttc
caGCATAATAAGATACATTATGGAACATGTAGCAGATGAAATTTTGCTGA
GAATCTTCAGTTACTTGGATACCAAGGATGTGATAACATGTTGCATGGTG
TCCAAAAGATTCCGAAGAGTCACTGAAGACTCTGCAATATACAAGAATTT
CAATGTTGACCATAACTCGTGTCTTTCATCGGGAGCATATCTCAATCACC
TACGTAAACATCATAGTAGAGTTGAAAAATTGGTTTTCCAAGATTTCTTC
TGGTTACCATCTACAAAATTGGCTCCAACATTTGCACGTTGTAAAAATCT
TGTTGAGCTGAATGtgacagAGGATGCTGCAGTGACCAACAGATTTCTTC
ATTTCAATTTATTGATCATGGATTTTGTTATTCAGACAGTTTCAAAAGCT
GCTGAAACCAAGAGTATTACCACCCTTCTTGCTCGTGGTAACACTATATG
TTGGAGACATATTGAACCTGTGTTAACTACGTACACTTTTGAGAAAATAG
ACTTGAGTTTATCAGTATTAGCCAAAGATCAAATGACGTggttatcaaaa
ttgaaaaaattggagtatGTTAATGTCTCACAGGTGGGACATTTTAAAAG
TAACTTGATGAAAGCTATTGCCACAAATTGTCCAAAGTTATCAGCCCTCA
ATCTGAGTAATTGTGAAGATTGGATCAACAAGGATCTCTATGGATTGGAA
GCAGTAGcacaaaaatgtacaaatttGCGAGAACTTAATGTTTCTAATTT
ACACATTCACTCGGGTGATGACCAATTGAATCGATTGTGTTCAATCATTG
GAGAGATGAAGAATCTAAAGAAGCTTTCCATCCCCGCATGCAGTCTTGTC
AATAATATCTCAATTAAACAATCTCCTGAAAAAGCTGCCAACAATCCTTC
AACAACTCCAGAAAAAACACATCCTACAACGAGATTGTCGCGACAACTTA
ATGACGATGAAACATTAGTCAGTGCCATTGGTTCAGGTCTGGATCCGATT
GTCAAAGGTTGTTGCGGTTTGGAGGAGCTGGAGATTGTGGACGTTGGTTT
CCATTCCCCTTTCAATCGAGTTGTTTGTGACCAGTTCATTTGCCCATTGA
CGTCAAACCTTCGAGACCGAAACTTTCAAGAAATTTGCAAGCTGAAAAAT
CTCAAGAAACTCTCACTGGCTGGATTATCAGGTGTTGGGGCTTTCAACTC
TTTAGTGGACATTACTTCTGCCTGCACCAAACTTGAATCACTGTCAATTG
CACAGTGTGGACTTGCTGGTCATTCTAATGCACTGATGCATTTAAAGAAT
GCTCTTAAAAATTGCAAGAGTTTAAAACATTTCAGGATGGACCAGCCACA
TTTCCACATTAAAGAAGACCTCCTGGAAGCCTTCCACGGTTGTTACCATC
TCCAAACTGTCACCTTCATCAATAAAAATGGAAAAGCCAACAAAAGTTTA
TCATCTTTTGTCAACCTTTTCAATAActgcaaatTTCTGGTAGGTTTCTT
CTTATTCTCTGGCATCACACAAACTGATTGTCAAAGACTACAAAGTACAC
TCATGAAAAAGTTTGGCAGTTCTCGGCCACCATTATCGGTTGGCATATTA
CCTTACCACATGGCCTTGAAAGATGACGGAATCTCCGAGAAAAATGTTCC
TTATCTTTTCACACGAGATATCATTTATTTCGAAAGTTCGATCGCCGTTG
AAAAGGCCAATGGCTTGCTCGTTTGATGGGCTGGTGGCGTTTTGTTGCGA
AACTTTATGctgaaaattaaagattttgatAGATTGACTCTCTCTCTGCT
CGGAAGAAGTTTTGTCTAAGGGAAGGACCCCTGAACAATAACTTgttttg
gaaaattcttttgtttgtaTTGTATTCGTTTCATTTACAAGGATTAATTT
ATCAACGGTAATAATACCGATTGGCAACTAATTTTATCATTAGCTTGTGT
CAatgattttgacatttttcaaaatccttATGCGCttataattttttaca
tttttatatgGGATATTTATATCTTGACTGacctttttttttgtatttaa
ttttagacccgagaaaaaaagaaaaac

Run BLAST on NCBI

transcript from alignment at sc0000574:79791..85072-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00026527 ID=TCONS_00026527|Name=TCONS_00026527|organism=Clytia hemisphaerica|type=transcript|length=5282bp|location=Sequence derived from alignment at sc0000574:79791..85072- (Clytia hemisphaerica)
GCATGATTGTTCACATTTCCCAGTATTTTAATCATGTTTTGATTTTGTTC
CAGCATAATAAGATACATTATGGAACATGTAGCAGATGAAATTTTGCTGA
GAATCTTCAGTTACTTGGATACCAAGGATGTGATAACATGTTGCATGGTG
TCCAAAAGATTCCGAAGAGTCACTGAAGACTCTGCAATATACAAGTATGT
CTTGTTTGAAGTTACAAAACTTCCAATATCTTAAGTTAAACATAAAGTTC
TAGATGTCACAATAAAGTTGTTCAGCTTATGCTGGCTATGTTCTGTATTA
TATTCTATTTATTTATCTATCTATTTATCTATCTATTGTGGTTGAGTTAC
AGGAGGCTCTGGAGCCCATTCTCGCAACTATAGATGCTTTTGAGTAAGCA
TCCCGTCAGCACCTTGAACTGACTACCCAATTCCCCTCACATGGCATGGG
TTGCCCTGGGCGAAGGTTTGTTCACTTGCCAAGTGAACTGTCGTGAGTGG
GTGAGTGGGAATCGAACCTTGGTCACCTGTACAGGAATCCAGGTTGATGT
CCACTATACCACAACGCCTATTCACACTATACAAGAGGACATTCATTTTC
AAAATAGAGAAAATTGGGTAATAAATGAGGCTAAATCAGGGCCGATTTTG
AGGTTGGGCTATTAGATAAAACATAACAAACAAACATAAGAACAGCTTCA
ATTCAGCTATTCAATTTTTTTAAAACGAAAAAGCTTGAATTCAAACAATT
TAATTACTTTTTATTTATAGGAATTTCAATGTTGACCATAACTCGTGTCT
TTCATCGGGAGCATATCTCAATCACCTACGTAAACATCATAGTAGAGTTG
AAAAATTGGTTTTCCAAGATTTCTTCTGGTTACCATCTACAAAATTGGCT
CCAACATTTGCACGTTGTAAAAATCTTGTTGAGCTGAATGTGACAGGTTG
CAAAATTACTTCAGCAGGACTTTTGAAAATTTTGGCCAACAATCCTGGAA
TAAAAAAATTGGGTTGGACCATTTCAGAAAATGTCTTCTCAGATGAAGGT
CATTTGGAAAATTTCAAATCAGCATTTAAAAATTTATCCAGCTTGATTTT
ACATTTTAAGACATTGAGAACCTTTGAGATATTTCTACCAGTGTTTGACA
GTAAAGATCTATTTGTCAATGAGTTTGGTCTCCATTATTTAAAATCATCC
TCCTCAAACACTTATGGTATTTACGTTAAAACACAGGATAAGTTTCAACT
CCATCTAGAGGATGCTGCAGTGACCAACAGATTTCTTCATTTCAATTTAT
TGATCATGGATTTTGTTATTCAGACAGTTTCAAAAGCTGCTGAAACCAAG
AGTATTACCACCCTTCTTGCTCGTGGTAACACTATATGTTGGAGACATAT
TGAACCTGTGTTAACTACGTACACTTTTGAGAAAATAGACTTGAGTTTAT
CAGTATTAGCCAAAGATCAAATGACGTGGTTATCAAAATTGAAAAAATTG
GAGTATGTTAATGTCTCACAGGTGGGACATTTTAAAAGTAACTTGATGAA
AGCTATTGCCACAAATTGTCCAAAGTTATCAGCCCTCAATCTGAGTAATT
GTGAAGATTGGATCAACAAGGTAAGATTTTACTCTAATTTTTAAAGATTT
AGAATGAACTTCTCTCTTTTTTAAAAACAATTCTAATCAATTTTATTTAT
CTTTGAATGTTGACTGTTAAAATTTACATATTTTGAAGGTTTTACTTTTA
CATAATTATTTTCCCGTTTTATATTAAACACATTTCATATCACACCAGGA
CGGTGCGCGTCTCCCTATTGTTTTAGTGTGCTGAATAAACAAAAAGTTGT
TTAATTTCCTCTTTCTGACCAATCTTGCTACGCACTCGTGTCAATCAAAT
GTGAAATTAAGCGTGTAAATTAAAATTGAGTAAGCAAACGATATCACTCT
TATTATTTATTAAAAAATGAAACCTTTTTTGATAAGAAGGATATTGGTTT
TTGCAATTAGAAATTTCTCATTCGATGGACGCGAGTTCATTAACCCACAT
GATTCTTTATGAATAATATTTCAAACTTTTTGTTCCCAATAATAAGTTAA
AGAAATGTTAAGCTGAAAACCAATATGCTAATCTCATATCATGAGTCAAG
CCTTTGACCTCATTTTTTAACGAATACTATTTTTTGTGGTTCATAGATTT
TGTGTCATTCCAAAAAAAAGAATCACTGTGATCACCAGACACCTAAAATT
TCATTAAAACCTTTGATATTTTTCTCCAAAGGATCTCTATGGATTGGAAG
CAGTAGCACAAAAATGTACAAATTTGCGAGAACTTAATGTTTCTAATTTA
CACATTCACTCGGGTGATGACCAATTGAATCGATTGTGTTCAATCATTGG
AGAGATGAAGAATCTAAAGAAGCTTTCCATCCCCGCATGCAGTCTTGTCA
ATAATATCTCAATTAAACAATCTCCTGAAAAAGCTGGTAAGAAATCTATG
AGCAGTTCACCTTCATGGAAAGCAGAGACCTTCAAACCTTCATCACTTTT
AGTTTCTTTGGATTCATCAAACCCTTCATTCACCGCTTCTCCTTCGACTT
CAGCCAACAATCCTTCAACAACTCCAGAAAAAACACATCCTACAACGAGA
TTGTCGCGACAACTTAATGACGATGAAACATTAGTCAGTGCCATTGGTTC
AGGTCTGGATCCGATTGTCAAAGGTTGTTGCGGTTTGGAGGAGCTGGAGA
TTGTGGACGTTGGTTTCCATTCCCCTTTCAATCGAGTTGTTTGTGACCAG
TTCATTTGGTATGACCTTTTCATTTTATTTCACAACCCTTCTTTGTTGCT
TTTTTGGAAAGTAGACTCTTCTAATCAGTGTAGTAGTTAGAAGGTAAGGC
TACATCGATTTATTTATCAGAATCTTCTCCTTGTTTTAGCCCATTGACGT
CAAACCTTCGAGACCGAAACTTTCAAGAAATTTGCAAGCTGAAAAATCTC
AAGAAACTCTCACTGGCTGGTATGATGACAATATCCTTTCAATGAATTTT
TTTTTTTTAATCTGTGTGGCTTAGAGTTTTCTATAGAGCTTCACGTCAAA
TTTCTAAAGATTCTGGTAGACATCAATTTTCAACGTCATTCCTCCCTGGT
AAATTTGACTCATATCCTTTTTGGCGTTCAGGTGTAGTGTTTTGGTGTTT
ATGGGTGATATATTTAGAGATTTTGAAATGCAAGTTTTAATGGTATGGAA
AGGAAAGTTGCTTATTTTTTCGTTCTTGTNGAGATTTTGAAATGCGAGTA
CTATGCTATGGGAAGGAAAGTTGCTTATTTATTTCATTTTTGCTCATCGC
AGGATTATCAGGTGTTGGGGCTTTCAACTCTTTAGTGGACATTACTTCTG
CCTGCACCAAACTTGAATCACTGTCAATTGCACAGTGTGGACTTGCTGGT
CATTCTAATGCACTGATGCATTTAAAGAATGCTCTTAAAAATTGCAAGAG
TTTAAAACATTTCAGGTTTGATATCATTTTGCAATACTTTATTTTCTAAT
AAAGATTCTCTTTTTGAAGTTTTAAATAATTTTGAACGTTTCAAATCTAT
ATTTCCATTTTTTTTTATTGAACCACATATTCCAGTCTCTGACAAGCTCA
CAAGTCTTTCCTTTTTTTTGCTGCTTCATACAGATTCAAGCCCTATTTCA
AGATTCTCCTTCCTTTAATAAGGAATGGGCAGCAAAATATGCATTATCCC
CCTGTAGATGATAGGGTTTTTTGGATTTTTTTTTCACTTGGAAATCCTGA
GAAATTTGAAAAAAGTTTCGGAAAATCCAGGATTTTTCCTCATTATTTGG
TCATCTGTATCGGAAAATCCATAAAACTTGCTCTATCTTCTCGAGTTTTC
TTGCCAAGTATCGGAAAATCTTGAATGTTACAGAAATCCTGAAGTTTTTC
AAAAGCAAACTGTTACAGAAAATCCATGTCGTCCTCATGGTGAGGGGGGT
AACGGACTATGACTGGAACCGCCCAATGATCTTCTCTTTCCATTTCTTTA
GGATGGACCAGCCACATTTCCACATTAAAGAAGACCTCCTGGAAGCCTTC
CACGGTTGTTACCATCTCCAAACTGTCACCTTCATCAATAAAAATGGAAA
AGCCAACAAAAGTTTATCATCTTTTGTCAACCTTTTCAATAACGTAATTT
TTCTCTTTTTAATTCACCCGGTCAACAGCTATGTAGATTCTATATTTCAA
AAAGTACACTGACTGTTTTACTTGTCTACAGATTTACAAGTTGTATTTTA
GATTTTTACACTGAGCAAATTCATGGCAAAAAAGTATCTATGGCATGGCA
TTGAAACCCTATTCATTTCTATTCTTTGAGCAGTGGAGCATTCTGAGTTA
CAATTAAAATTTTCTCTTCTTTTTGAACAGTGCAAATTTCTGGTAGGTTT
CTTCTTATTCTCTGGCATCACACAAACTGATTGTCAAAGACTACAAAGTA
CACTCATGAAAAAGTAGGTGTATTTTGATTATGTAATAATTCTTTAAAAA
AATTTCTTTATCTAGTTTAAAGGAAGGTTTGATAGCTGCTCAAGATGCTT
TTATTCTATATATCTATGAATGTCTCTTAGGATCCCGTAGTGTAAAAATT
TTCCTTTTTGAGCAAAAGGCTTCACAGAGCATTTTTAGCGCCCTTTATTC
TCTCTTTATTTTCCTTTTCCCGATCTAGACCTCAATTATCTTAAAATTTC
TATTCCGTACCATAGGTTTGGCAGTTCTCGGCCACCATTATCGGTTGGCA
TATTACCTTACCACATGGCCTTGAAAGATGACGGAATCTCCGAGAAAAAT
GTTCCTTATCTTTTCACACGAGATATCATTTATTTCGAAAGTTCGATCGC
CGTTGAAAAGGCCAATGGCTTGCTCGTTTGATGGGCTGGTGGCGTTTTGT
TGCGAAACTTTATGCTGAAAATTAAAGATTTTGATAGATTGACTCTCTCT
CTGCTCGGAAGAAGTTTTGTCTAAGGGAAGGACCCCTGAACAATAACTTG
TTTTGGAAAATTCTTTTGTTTGTATTGTATTCGTTTCATTTACAAGGATT
AATTTATCAACGGTAATAATACCGATTGGCAACTAATTTTATCATTAGCT
TGTGTCAATGATTTTGACATTTTTCAAAATCCTTATGCGCTTATAATTTT
TTACATTTTTATATGGGATATTTATATCTTGACTGACCTTTTTTTTTGTA
TTTAATTTTAGACCCGAGAAAAAAAGAAAAAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_014916	XLOC_014916	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000574	supercontig	sc0000574:79791..85072 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.808824	0.0183422	0	0	3.45929	2.8846e-09	0	0.948831	0.023999	2.41996	1.94947	0.671049	1.13622	3.7111e-06	1.2809	2.46388	0.0803676	2.23045	0	5.97233e-05	0	0.0295944	1.24786	1.52946	0	0	6.14118e-08	0.0175583	0.578023	6.59334e-10

Blast

[Close]

BLAST of TCONS_00026527 vs. Swiss-Prot (Human)
Match: FXL18 (F-box/LRR-repeat protein 18 OS=Homo sapiens GN=FBXL18 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.886e-26
Identity = 91/332 (27.41%), Postives = 151/332 (45.48%), Query Frame = 1

Query:  688 LSALNLSNC-------------EDWINKDLYGLEAVAQKCTNLRELNVSNLHIHSGDDQLNRLCSIIGEMKNLKKLSIPACSLVNNISIKQSPEKAANNPS--TTPEKTHPTTRLSRQLNDDETLVSAI---GSGLDPIVKGCCGLEELEIVDVGFHS--PFNRVVCDQFI--CPLTSNLRDRNFQEICKLKNLKKLSLAGLSGVGAFNSLVDITSACTKLESLSIAQCGLAGHSNALMHLKNALKNCKSLKHFRMDQPHFHIKEDLLEAFHGCYHLQTVTFINKNGKANKSLSSFVNLFNNCKFLVGFFLFSGITQTDCQRLQSTLMKKFG 1617
            L++LNLS C             ED I+  +  LE +   C NLR LN+S  H HS +     LC ++  +++L+ LS+P CS+ ++       ++A   P+    P       R+  Q         A     S    ++K    LE LE++   F S  P N       +  C    ++ D     I +L  L+ L+LA L  V   + LV+I   C +L SLS+A  G+ G    +  L + LK+CK L+  R++QP+F       +A   C  LQ +  ++++G       + +     C  +V   LF+G +   C+ LQ +L++++G
Sbjct:  345 LASLNLSGCVHCLSPDSLLRKAEDDIDSSI--LETLVASCCNLRHLNLSAAHHHSSEGLGRHLCQLLARLRHLRSLSLPVCSVADS---APRADRAPAQPAMHAVPRGFGKKVRVGVQSCPSPFSGQACPQPSSVFWSLLKNLPFLEHLELIGSNFSSAMPRNEPAIRNSLPPCSRAQSVGDSEVAAIGQLAFLRHLTLAQLPSVLTGSGLVNIGLQCQQLRSLSLANLGMMGKVVYMPALSDMLKHCKRLRDLRLEQPYFSANAQFFQALSQCPSLQRLCLVSRSGTLQP--DAVLAFMARCLQVVMCHLFTGESLATCKSLQQSLLRRWG 669

The following BLAST results are available for this feature:

BLAST of TCONS_00026527 vs. Swiss-Prot (Human)

BLAST of TCONS_00026527 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FXL18	1.886e-26	27.41	F-box/LRR-repeat protein 18 OS=Homo sapiens GN=FBX...	[more]

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TCONS_00026527 (transcript) - C. hemisphaerica