TCONS_00026518 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026518
Unique NameTCONS_00026518
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026518 ID=TCONS_00026518|Name=TCONS_00026518|organism=Clytia hemisphaerica|type=transcript|length=1312bp
AATTCTGTACGCCAAAACAAGGCTTTAATTATTGATACCCCTAGGAACTA
ACTTGTAACGTAGTGAGATAGTTTGGCTTAAAAATTGGGTGCACTTTTTC
CTCTACTTATTGACGATTATCAACGAATATTGTTTAGACATTTGTTTCAA
ATATGCTGGGACacacaaaatataattttttgtcTGCTTTTCTTATTGTA
GCGCTTCTTTTTGTTATAATCGTAATGGATTCAAATATGAAAAACAACGA
CAGTGGTTGGTCATTAGATTTCCCTACCATTTTGGATTTCACATCTCTCG
ATTTCACTTCATTTTACAACGACGAAACATGGATGAAATCGGAAGAATAT
CCGCAAGAGTCGCTACCActcgaaaattctcattttgaTCCGTTGATGAT
TGAGATGGATCAATATTTGACACCCCCGCCTACGCCCCCTGAAAGTATAT
CCGCCTTCCCTCACATCGAAGACTTGCAGCTCTCATCAGAACTCCTTCTC
AACGAAACTAAACATATTGATATGCAGGAACTTCAGAAATCAATCACGAC
TAAAGAACAGACTTTATCAGAAACGCCGACAGATTTTGATGTAGAGGACA
TTTGGAAATACATTAACACAGACTATAACGAAGACACTTCATATTTACAA
CAAATAAGCTTAGAAAATAATATCATAGACTTTGTTAATTCGATCGATAC
AAAGACAAAGCAAGAAACAGATAAGATTTTACCTCACCAAACAACGAACG
ATACAAAATTAGaAGAATGTACAAAACAAAGGACAATGGAGAAGAAAAAT
CTAACGAAAAAAGTTCGAAGAAAAGCTCGAAACCATCcaaACAATTGTTA
TCACCTATGGGACTTCATTCGAGACGGATTGAACGATCCAAAAGTCACCT
ATGTGGTATGGGTCAAACAATCAGAGGGCGAGTTTCGTATCACAAATACA
TCAGAACTTTCACGTAAATGGGGATATTtgaaaaactctaaaaatatgAC
TTATGATAAATTATCACGCTCTTTGAGGTATTATTGTTCGTTAAATGTAT
TGGAAAAAGTCCCGGGAACCAGATTGCAATTTCGGTTTGGTAAGAGAAGA
ACATGGACCAAAGTAAGGAATTGATCAGagtttattttttacaaaataat
attttttctactgcaatgggttcttccagaaaatgtccatacatgggggg
ggggggaggatataacattttttgtaaatttaccccccggacaagcatta
gttgaccccatagacaatcaaaattaccctcTAGCAGAGCAAAATAACCC
CCAAaaagagca
Run BLAST on NCBI

protein sequence of TCONS_00026518-protein

>TCONS_00026518-protein ID=TCONS_00026518-protein|Name=TCONS_00026518-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MLGHTKYNFLSAFLIVALLFVIIVMDSNMKNNDSGWSLDFPTILDFTSLD
FTSFYNDETWMKSEEYPQESLPLENSHFDPLMIEMDQYLTPPPTPPESIS
AFPHIEDLQLSSELLLNETKHIDMQELQKSITTKEQTLSETPTDFDVEDI
WKYINTDYNEDTSYLQQISLENNIIDFVNSIDTKTKQETDKILPHQTTND
TKLEECTKQRTMEKKNLTKKVRRKARNHPNNCYHLWDFIRDGLNDPKVTY
VVWVKQSEGEFRITNTSELSRKWGYLKNSKNMTYDKLSRSLRYYCSLNVL
EKVPGTRLQFRFGKRRTWTKVRN
Run BLAST on NCBI

transcript from alignment at sc0000574:198650..200702+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026518 ID=TCONS_00026518|Name=TCONS_00026518|organism=Clytia hemisphaerica|type=transcript|length=2053bp|location=Sequence derived from alignment at sc0000574:198650..200702+ (Clytia hemisphaerica)
AATTCTGTACGCCAAAACAAGGCTTTAATTATTGATACCCCTAGGAACTA
ACTTGTAACGTAGTGAGATAGTTTGGCTTAAAAATTGGGTGCACTTTTTC
CTCTACTTATTGACGATTATCAACGAATATTGTTTAGACATTTGTTTCAA
ATATGCTGGGACacacaaaatataattttttgtcTGCTTTTCTTATTGTA
GCGCTTCTTTTTGTTATAATCGTAATGGATTCAAATATGAAAAACAACGA
CAGTGGTTGGTCATTAGATTTCCCTACCATTTTGGATTTCACATCTCTCG
ATTTCACTTCATTTTACAACGACGAAACATGGATGAAATCGGAAGAATAT
CCGCAAGAGTCGCTACCActcgaaaattctcattttgaTCCGTTGATGAT
TGAGATGGATCAATATTTGACACCCCCGCCTACGCCCCCTGAAAGTATAT
CCGCCTTCCCTCACATCGAAGACTTGCAGCTCTCATCAGAACTCCTTCTC
AACGAAACTAAACATATTGATATGCAGGAACTTCAGAAATCAATCACGAC
TAAAGAACAGACTTTATCAGAAACGCCGACAGATTTTGATGTAGAGGACA
TTTGGAAATACATTAACACAGACTATAACGAAGACACTTCATATTTACAA
CAAATAAGCTTAGAAAATAATATCATAGACTTTGTTAATTCGATCGATAC
AAAGACAAAGCAAGAAACAGATAAGATTTTACCTCACCAAACAACGAACG
ATACAAAATTAGGTATTTACCGTGTAGCAAATTCACCCACACCCCACTGA
TTGCTAGACTATgggtttgattttaaatttcattgtgTTTTTTCTTAGTT
TCTCTGAGCTTTACTTTCTACCGGGTCTGAGCAATGAGATCTATTCTAGA
ATGAAATACCTCATaatcattttcatttctttcagaAGAATGTACAAAAC
AAAGGACAATGGAGAAGAAAAATCTAACGAAAAAAGTTCGAAGAAAAGCT
CGAAACCATCGTAAGTTGCCAACAGCTTGTTTTTCTTAGATTTACAGTGT
GTTCTAACTGAGGgaagttcataaaaaaaatctcacccAATTTCCCCTCC
TTGAGGTTTCGAAAAATTCTTGGTGGTCCCTGCCtttcgttttttgaaaa
ttatttagtGATTCCTCTTACGTTGatatttttggacaaaaattcgAATA
TTTAGCAAAAGAACTTGTTTTCCTTGTTGCCCTCAAATTGTTGTCTATCC
tgtaaatttttacaaaatgattcatccctcatttttggcaattccGTCAA
GAAATCTCCCTTTTTCTATTTAGATATTTATTTAGATATTTATTGTTCAA
CACACAGGCCATCAAAAGATTTCAAGTAGACTTCGATGATTAGATTTCAC
CGATTTCACTTGACTAAACCTTTTTACGGTTAAATTGTTTTCCTCAATCC
TCTAAAAAGTAGATAAACGGCAAAACAAAAAAGGTCTCTCTATGATAATT
GGaagtcaaaaatttcaaaatccaaataaatGAATATGGAgaggattttt
tttctttaccacttttttctctttttagcaaACAATTGTTATCACCTATG
GGACTTCATTCGAGACGGATTGAACGATCCAAAAGTCACCTATGTGGTAT
GGGTCAAACAATCAGAGGGCGAGTTTCGTATCACAAATACATCAGAACTT
TCACGTAAATGGGGATATTtgaaaaactctaaaaatatgACTTATGATAA
ATTATCACGCTCTTTGAGGTATTATTGTTCGTTAAATGTATTGGAAAAAG
TCCCGGGAACCAGATTGCAATTTCGGTTTGGTAAGAGAAGAACATGGACC
AAAGTAAGGAATTGATCAGagtttattttttacaaaataatattttttct
actgcaatgggttcttccagaaaatgtccatacatggggggggggggagg
atataacattttttgtaaatttaccccccggacaagcattagttgacccc
atagacaatcaaaattaccctcTAGCAGAGCAAAATAACCCCCAAaaaga
gca

Coding sequence (CDS) from alignment at sc0000574:198650..200702+

>TCONS_00026518 ID=TCONS_00026518|Name=TCONS_00026518|organism=Clytia hemisphaerica|type=CDS|length=2916bp|location=Sequence derived from alignment at sc0000574:198650..200702+ (Clytia hemisphaerica)
ATGCTGGGACacacaaaatataattttttgtcTGCTTTTCTTATTGTAGC
GCTTCTTTTTGTTATAATCGTAATGGATTCAAATATGAAAAACAACGACA
GTGGTTGGTCATTAGATTTCCCTACCATTTTGGATTTCACATCTCTCGAT
TTCACTTCATTTTACAACGACGAAACATGGATGAAATCGGAAGAATATCC
GCAAGAGTCGCTACCActcgaaaattctcattttgaTCCGTTGATGATTG
AGATGGATCAATATTTGACACCCCCGCCTACGCCCCCTGAAAGTATATCC
GCCTTCCCTCACATCGAAGACTTGCAGCTCTCATCAGAACTCCTTCTCAA
CGAAACTAAACATATTGATATGCAGGAACTTCAGAAATCAATCACGACTA
AAGAACAGACTTTATCAGAAACGCCGACAGATTTTGATGTAGAGGACATT
TGGAAATACATTAACACAGACTATAACGAAGACACTTCATATTTACAACA
AATAAGCTTAGAAAATAATATCATAGACTTTGTTAATTCGATCGATACAA
AGACAAAGCAAGAAACAGATAAGATTTTACCTCACCAAACAACGAACGAT
ACAAAATTAGaAGAATGTACAAAACAAAGGACAATGGAGAAGAAAAATCT
AACGAAAAAAGTTCGAAGAAAAGCTCGAAACCATCcaaACAATTGTTATC
ACCTATGGGACTTCATTCGAGACGGATTGAACGATCCAAAAGTCACCTAT
GTGGTATGGGTCAAACAATCAGAGGGCGAGTTTCGTATCACAAATACATC
AGAACTTTCACGTAAATGGGGATATTtgaaaaactctaaaaatatgACTT
ATGATAAATTATCACGCTCTTTGAGGTATTATTGTTCGTTAAATGTATTG
GAAAAAGTCCCGGGAACCAGATTGCAATTTCGGTTTGGTAAGAGAAGAAC
ATGGACCAAAGTAAGGAATTGAATGCTGGGACacacaaaatataattttt
tgtcTGCTTTTCTTATTGTAGCGCTTCTTTTTGTTATAATCGTAATGGAT
TCAAATATGAAAAACAACGACAGTGGTTGGTCATTAGATTTCCCTACCAT
TTTGGATTTCACATCTCTCGATTTCACTTCATTTTACAACGACGAAACAT
GGATGAAATCGGAAGAATATCCGCAAGAGTCGCTACCActcgaaaattct
cattttgaTCCGTTGATGATTGAGATGGATCAATATTTGACACCCCCGCC
TACGCCCCCTGAAAGTATATCCGCCTTCCCTCACATCGAAGACTTGCAGC
TCTCATCAGAACTCCTTCTCAACGAAACTAAACATATTGATATGCAGGAA
CTTCAGAAATCAATCACGACTAAAGAACAGACTTTATCAGAAACGCCGAC
AGATTTTGATGTAGAGGACATTTGGAAATACATTAACACAGACTATAACG
AAGACACTTCATATTTACAACAAATAAGCTTAGAAAATAATATCATAGAC
TTTGTTAATTCGATCGATACAAAGACAAAGCAAGAAACAGATAAGATTTT
ACCTCACCAAACAACGAACGATACAAAATTAGaAGAATGTACAAAACAAA
GGACAATGGAGAAGAAAAATCTAACGAAAAAAGTTCGAAGAAAAGCTCGA
AACCATCcaaACAATTGTTATCACCTATGGGACTTCATTCGAGACGGATT
GAACGATCCAAAAGTCACCTATGTGGTATGGGTCAAACAATCAGAGGGCG
AGTTTCGTATCACAAATACATCAGAACTTTCACGTAAATGGGGATATTtg
aaaaactctaaaaatatgACTTATGATAAATTATCACGCTCTTTGAGGTA
TTATTGTTCGTTAAATGTATTGGAAAAAGTCCCGGGAACCAGATTGCAAT
TTCGGTTTGGTAAGAGAAGAACATGGACCAAAGTAAGGAATTGAATGCTG
GGACacacaaaatataattttttgtcTGCTTTTCTTATTGTAGCGCTTCT
TTTTGTTATAATCGTAATGGATTCAAATATGAAAAACAACGACAGTGGTT
GGTCATTAGATTTCCCTACCATTTTGGATTTCACATCTCTCGATTTCACT
TCATTTTACAACGACGAAACATGGATGAAATCGGAAGAATATCCGCAAGA
GTCGCTACCActcgaaaattctcattttgaTCCGTTGATGATTGAGATGG
ATCAATATTTGACACCCCCGCCTACGCCCCCTGAAAGTATATCCGCCTTC
CCTCACATCGAAGACTTGCAGCTCTCATCAGAACTCCTTCTCAACGAAAC
TAAACATATTGATATGCAGGAACTTCAGAAATCAATCACGACTAAAGAAC
AGACTTTATCAGAAACGCCGACAGATTTTGATGTAGAGGACATTTGGAAA
TACATTAACACAGACTATAACGAAGACACTTCATATTTACAACAAATAAG
CTTAGAAAATAATATCATAGACTTTGTTAATTCGATCGATACAAAGACAA
AGCAAGAAACAGATAAGATTTTACCTCACCAAACAACGAACGATACAAAA
TTAGaAGAATGTACAAAACAAAGGACAATGGAGAAGAAAAATCTAACGAA
AAAAGTTCGAAGAAAAGCTCGAAACCATCcaaACAATTGTTATCACCTAT
GGGACTTCATTCGAGACGGATTGAACGATCCAAAAGTCACCTATGTGGTA
TGGGTCAAACAATCAGAGGGCGAGTTTCGTATCACAAATACATCAGAACT
TTCACGTAAATGGGGATATTtgaaaaactctaaaaatatgACTTATGATA
AATTATCACGCTCTTTGAGGTATTATTGTTCGTTAAATGTATTGGAAAAA
GTCCCGGGAACCAGATTGCAATTTCGGTTTGGTAAGAGAAGAACATGGAC
CAAAGTAAGGAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014911XLOC_014911Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026518-proteinTCONS_00026518-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026518-exon-sc0000574-1491911889:198650..199411TCONS_00026518-exon-sc0000574-1491911889:198650..199411Clytia hemisphaericaexon
TCONS_00026518-exon-sc0000574-1510915933:198650..199411TCONS_00026518-exon-sc0000574-1510915933:198650..199411Clytia hemisphaericaexon
TCONS_00026518-exon-sc0000574-1575043694:198650..199411TCONS_00026518-exon-sc0000574-1575043694:198650..199411Clytia hemisphaericaexon
TCONS_00026518-exon-sc0000574-1491911889:199585..199659TCONS_00026518-exon-sc0000574-1491911889:199585..199659Clytia hemisphaericaexon
TCONS_00026518-exon-sc0000574-1510915933:199585..199659TCONS_00026518-exon-sc0000574-1510915933:199585..199659Clytia hemisphaericaexon
TCONS_00026518-exon-sc0000574-1575043694:199585..199659TCONS_00026518-exon-sc0000574-1575043694:199585..199659Clytia hemisphaericaexon
TCONS_00026518-exon-sc0000574-1491911889:200228..200702TCONS_00026518-exon-sc0000574-1491911889:200228..200702Clytia hemisphaericaexon
TCONS_00026518-exon-sc0000574-1510915933:200228..200702TCONS_00026518-exon-sc0000574-1510915933:200228..200702Clytia hemisphaericaexon
TCONS_00026518-exon-sc0000574-1575043694:200228..200702TCONS_00026518-exon-sc0000574-1575043694:200228..200702Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000574supercontigsc0000574:198650..200702 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.0519	0.747021	0.649481	0	0.386876	0.618937	0.368705	0.460395	0.4835	1.89649	0.5813	0.664068	0.699586	0.990719	0.597304	0.762983	0.0717871	1.47133	0.101654	0.37281	0.369832	0.135293	2.631	1.68987	6.46826	5.13135	1.96686	1.39939	37.467	21.0742
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000418Ets_dom
IPR011991WHTH_DNA-bd_dom
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
[Close]
BLAST of TCONS_00026518 vs. Swiss-Prot (Human)
Match: EHF (ETS homologous factor OS=Homo sapiens GN=EHF PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.850e-17
Identity = 44/113 (38.94%), Postives = 66/113 (58.41%), Query Frame = 3 
Query:  819 RKARNHPNNCY---------HLWDFIRDGLNDP--KVTYVVWVKQSEGEFRITNTSELSRKWGYLKNSKNMTYDKLSRSLRYYCSLNVLEKVPGTRLQFRFGK-RRTWTKVRN 1121
            +K ++ P  C+         HLW+FIRD L +P      + W  +SEG FR   +  +++ WG  KN+ +MTY+KLSR++RYY    +LE+V G RL ++FGK  R W +  N
Sbjct:  188 KKEQDPPAKCHTKKHNPRGTHLWEFIRDILLNPDKNPGLIKWEDRSEGVFRFLKSEAVAQLWGKKKNNSSMTYEKLSRAMRYYYKREILERVDGRRLVYKFGKNARGWRENEN 300
The following BLAST results are available for this feature:
BLAST of TCONS_00026518 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EHF5.850e-1738.94ETS homologous factor OS=Homo sapiens GN=EHF PE=2 ... [more]
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