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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026517 ID=TCONS_00026517|Name=TCONS_00026517|organism=Clytia hemisphaerica|type=transcript|length=1998bpRun BLAST on NCBI protein sequence of TCONS_00026517-protein >TCONS_00026517-protein ID=TCONS_00026517-protein|Name=TCONS_00026517-protein|organism=Clytia hemisphaerica|type=polypeptide|length=561bp MADTIETVPSEEVPVTKLSGNSEKKKSKRPNTEEYHIDPEKILKYTRGGGRun BLAST on NCBI transcript from alignment at sc0000574:163275..197019+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026517 ID=TCONS_00026517|Name=TCONS_00026517|organism=Clytia hemisphaerica|type=transcript|length=33745bp|location=Sequence derived from alignment at sc0000574:163275..197019+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000574:163275..197019+ >TCONS_00026517 ID=TCONS_00026517|Name=TCONS_00026517|organism=Clytia hemisphaerica|type=CDS|length=23604bp|location=Sequence derived from alignment at sc0000574:163275..197019+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00026517 vs. Swiss-Prot (Human)
Match: WDR46 (WD repeat-containing protein 46 OS=Homo sapiens GN=WDR46 PE=1 SV=3) HSP 1 Score: 391.734 bits (1005), Expect = 1.458e-126 Identity = 206/449 (45.88%), Postives = 290/449 (64.59%), Query Frame = 3
Query: 216 KLKSNLKQKEANYKQAVKQAAKSEYLLTEETGFLEVEAVEKTYNISQKAIEKSVDVSSAQKYFNLHLQEYGPYKINYTRNGKFLLLCGQKSHLATVNWNTKDLGCEIQSQESNRDACWLHQDRFFAVAHKKYVHIYDHTGSEIHVMKEHRNVNRVHYLPYHFLLTSVGQNGHLMYQDTSTGKAVGKLRIPHGRCDCLTSNPYNAVVQLGHANGTVSMWAPKVKEPLLKMLCHRGPVLSIATERQGVYMATTGQDGMLKVWDIRA-YKPVYKYRFQGKASHCLAVSQKGLLAAAFGSNVYVFK---DAFRTRQNLPYMRHIVNGKADITDIEFCPYEDVLGVGHSNGFTSLLIPGAGEANFDGLEVNPYESRKQKAETEVKMLLEKIQPEMISLDPSDIQKVDTASTIMKQEEKDENM-----EDVAFQPXXXXXXXXXXXXALQRKKGV 1535
K +S L+ EA ++ +AA+SE LL EE GFLE E E T I Q I ++VD++SA K+F+L+L+++GPY++NY+R G+ L G++ H+A ++W TK L CEI E+ RD +LH + AVA +++HIYD+ G E+H ++ V R+ +LP+HFLL + + G L Y D S GK V L GR D ++ NPYNAV+ LGH+NGTVS+W+P +KEPL K+LCHRG V ++A + G YMAT+G D LK++D+R Y+P+ A H LA SQ+GLL A G V ++ A PY+ H ++G + ++FCP+EDVLGVGH+ G TS+L+PGAGE NFDGLE NPY SRKQ+ E EVK LLEK+ E+I LDP + +VD S ++E+ E + FQPK K+KGRSS+ ++RK+ V
Sbjct: 127 KTRSRLEVAEAEEEETSIKAARSELLLAEEPGFLEGEDGEDTAKICQADIVEAVDIASAAKHFDLNLRQFGPYRLNYSRTGRHLAFGGRRGHVAALDWVTKKLMCEINVMEAVRDIRFLHSEALLAVAQNRWLHIYDNQGIELHCIRRCDRVTRLEFLPFHFLLATASETGFLTYLDVSVGKIVAALNARAGRLDVMSQNPYNAVIHLGHSNGTVSLWSPAMKEPLAKILCHRGGVRAVAVDSTGTYMATSGLDHQLKIFDLRGTYQPLSTRTLPHGAGH-LAFSQRGLLVAGMGDVVNIWAGQGKASPPSLEQPYLTHRLSG--PVHGLQFCPFEDVLGVGHTGGITSMLVPGAGEPNFDGLESNPYRSRKQRQEWEVKALLEKVPAELICLDPRALAEVDVISLEQGKKEQIERLGYDPQAKAPFQPKPKQKGRSSTASLVKRKRKV 572 The following BLAST results are available for this feature:
BLAST of TCONS_00026517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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