TCONS_00026506 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026506
Unique NameTCONS_00026506
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1459

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026506 ID=TCONS_00026506|Name=TCONS_00026506|organism=Clytia hemisphaerica|type=transcript|length=1459bp
NCAAAAAATACCGATCCACTTTTATAAACATAGCCATAAGGAAACCAGCA
CTCTTCgcatgacgagccgtttttttCTGAACCTTTTCTTATTACCTAAT
TAAAGCCAAAACAAagaagttatcaatcaatcagttATCAGAACACTTTC
GAAGCGCTTTTTCTATTCCTTTCCATTTCTCTAGTTGATATTTTACTCAA
CNTTTCTGAACCTTTTCTTATTACCTAATTAAAGCCAAAACAAagaagtt
atcaatcaatcagttATCAGAACACTTTCGAAGCGCTTTTTCTATTCCTT
TCCATTTCTCTAGTTGATATTTTACTCAACAGACCCAAGCTACCATAGTT
GTCAAAGATTGAATCAAAGATATCCGATACCATTTGTTTACTTCCAAGCT
TACTCATTTAGTGTGTTCAAAGAGCCTTTTAAAATTGATGTCTTAATGGA
ATGTTATTCTTATTTGCTGAATGGTCAAATAGCCATCCATATTTAGACTT
TTTCTTGTTGACTTGAACTAAAATACTAACATGTACTAAACATTCGTAGA
AAAGACAGTATCGTTCGTTACGGTAAAATTTAGCGGTTACCTGAAAACCT
TGGTCATTCCCTTTTTATTCAATGCTGTCGCGACCTTTTTAGCGGCAACG
GATCCTTAAATCTCTTTAGGTCATACACCTTACCCAATTTCTATGACATC
ATTTTTTCTTTTCCAGTCAGACGAAACGAACTAAAAGCGTCGCAGCGCCC
TCTGCCAATCATCTGTTGTATATTTTGAGTAAATGAATATCTACGCTCAT
GGTATCAACCATGAAGTTTGGAGCTCGATGGCTACATACGGCTGACGGTT
TTTATCAGGGTGATGCAATACATAACTCCAAGCAATCGTCAAGCTGCCAT
GTGGGAATGCTCTTCCTCGACCTTGGAATGATCTCTAACAGGATACGAAT
TTGTGGCATGAGCATCCCCATTATTTCGGCTTCATCAACCTGGATTTGAT
TGGTGGATGAAATTTGTGATAATAATGGAATTGCTTTGACATAGCTGATG
GATGTTGTCTTCTCCGTAGATGCAGTTACTTGCTTGGTGATTGTTGCGAA
CCATTGGTGTATTTATAAGAGTATTCAATGCAATCGTTGAGATATGGTAT
GATATGCTGATGGATGGATTATCTAGAAGTGATTTCTTTGGTTGAAAGAT
GACCTCTTTTAGCCCAGTCATCAACCGTGGCCAATGTTGCTTGGCCAGTG
TTTCAAATCAGATCGTTCTATTTTTGGAATGAAAAATCGTCATtatagac
cagcgtccgaggCAGTGGATGACGTATTAGTAGTATAGTAATATTAGTAT
TAGATagtgaattagtagtatccaaaaatggtatggtttgttaactttcg
atgtctaaatctcgagatattttggtttaaatattgaaaattatcgatat
tttttgctg
Run BLAST on NCBI

transcript from alignment at sc0000574:6111..9005+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026506 ID=TCONS_00026506|Name=TCONS_00026506|organism=Clytia hemisphaerica|type=transcript|length=2895bp|location=Sequence derived from alignment at sc0000574:6111..9005+ (Clytia hemisphaerica)
NCAAAAAATACCGATCCACTTTTATAAACATAGCCATAAGGAAACCAGCA
CTCTTCgcatgacgagccgtttttttCTGAACCTTTTCTTATTACCTAAT
TAAAGCCAAAACAAagaagttatcaatcaatcagttATCAGAACACTTTC
GAAGCGCTTTTTCTATTCCTTTCCATTTCTCTAGTTGATATTTTACTCAA
CNTTTCTGAACCTTTTCTTATTACCTAATTAAAGCCAAAACAAagaagtt
atcaatcaatcagttATCAGAACACTTTCGAAGCGCTTTTTCTATTCCTT
TCCATTTCTCTAGTTGATATTTTACTCAACAGACCCAAGCTACCATAGTT
GTCAAAGATTGAATCAAAGATATCCGATACCATTTGTTTACTTCCAAGCT
TACTCATTTAGTGTGTTCAAAGAGCCTTTTAAAATTGATGTCTTAATGGA
ATGTTATTCTTATTTGCTGAATGGTCAAATAGCCATCCATATTTAGACTT
TTTCTTGTTGACTTGAACTAAAATACTAACATGTACTAAACATTCGTAGA
AAAGACAGTATCGTTCGTTACGGTAAAATTTAGCGGTTACCTGAAAACCT
TGGTCATTCCCTTTTTATTCAATGCTGTCGCGACCTTTTTAGCGGCAACG
GATCCTTAAATCTCTTTAGGTCATACACCTTACCCAATTTCTATGACATC
ATTTTTTCTTTTCCAGTCAGACGAAACGAACTAAAAGCGTCGCAGCGCCC
TCTGCCAATCATCTGTTGTATATTTTGAGTAAATGAATATCTACGCTCAT
GGTATCAACCATGAAGTTTGGAGCTCGATGGCTACATACGGCTGACGGTT
TTTATCAGGTAAATAATTTTGTGCATCACACACCTAACTCTAGGGGAAGT
CCTAAATGCTTCCTCTTCTTCTCGCCTAGACAACTGTCTACAACTCTATT
CCATTACGGCCATTCAAAAAGCCTAGACAACCACATGATGACTTTGTCTC
CACTACTCCAACCCAAAAATAGCATCttcatattttcaaagtttgttctA
TGGCCCACAGCCCCATGTTATGATTTATTTAGCATACACGTCTGACATTT
CCATGACACCTTGGTTCAAAGCCCATCACAATCTCATCTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTGATTACACCTTCTAT
GCTCAAGCAATCCCTCTCTATTCATTTTCAAGCAGCCCAATCTGCTCCAA
GAACACTTTCTCAGCTCTTCCTTAAGCAGCActgatttcaatttcttttt
caaacctaCTGCTGGGAATTAGATTGATATAGATTACCCGTCTGCTTTCA
GGTTTTCTGTGTCGTGGGATCTTCCCACGCTACCGAAACCCTGGACAGCA
TAATAGTATTAACTTTGTGATCATATTAGATTTCAACAATAACCTACTAA
CTCGCGGTTACTGAAGAGTGATCGAATTGAAACCCCGACATTGTCCCCAC
GAACCAGTGTAGACTTGATAGCCCAGTCGGTAGCGCAGTTGAACTTGTAA
TGCGAAAGTCGTGAAATCCCACCCTTTTGGTCAAACATCTAAatgcgaga
ttaaatttcaagGCTACTTCATTTCTCttctttaaaagaattttaatttt
gagGTACCTTACATAGGCTGTATTTTTGTAGACCTAATTCGAAAAAGGCA
ACAAAATatcgaagaagaaaaatatgaagaCTTTCTTAACATACCTGAAA
GTTCAAAAGTTTTCGTTTTAAATCAccaaatctttcttttgatacagGGT
GATGCAATACATAACTCCAAGCAATCGTCAAGCTGCCATGTGGGAATGCT
CTTCCTCGACCTTGGAATGATCTCTAACAGGTTAGATTGGGTTTTATTTG
TCTATGTAACTGCAATTATACCAATGTAACTGCAATTTTCCAGTCTCTTA
CCTTCTATCTGTTTTTATATGTTCACTTTAGTACATCTAATACATGATGC
TAATGATGTTAGAAgtaaagagaaaacaaaaaatataattacgGTCGAAG
GCTTTATCAATAACCTTAATCAAACGGTCGTTACGAAATCCTGTAATTTT
CGTTTTATTGGATTCTAAAGCCACGATGTTTGTTCAATTACCACTCTCAA
ATTTCTCAATGTGAATGATAGTAGAATTGAATCTTCCCTTCAACAAGTCC
CACATTGATTTGGTAAAATGTTCATTCGAGTAAGGGGACgttcaaatttt
aattattcTCTCTATATTTTATTCCAGGATACGAATTTGTGGCATGAGCA
TCCCCATTATTTCGGCTTCATCAACCTGGATTTGATTGGTGGATGAAATT
TGTGATAATAATGGAATTGCTTTGACATAGCTGATGGATGTTGTCTTCTC
CGTAGATGCAGTTACTTGCTTGGTGATTGTTGCGAACCATTGGTGTATTT
ATAAGAGTATTCAATGCAATCGTTGAGATATGGTATGATATGCTGATGGA
TGGATTATCTAGAAGTGATTTCTTTGGTTGAAAGATGACCTCTTTTAGCC
CAGTCATCAACCGTGGCCAATGTTGCTTGGCCAGTGTTTCAAATCAGATC
GTTCTATTTTTGGAATGAAAAATCGTCATtatagaccagcgtccgaggCA
GTGGATGACGTATTAGTAGTATAGTAATATTAGTATTAGATagtgaatta
gtagtatccaaaaatggtatggtttgttaactttcgatgtctaaatctcg
agatattttggtttaaatattgaaaattatcgatattttttgctg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014906XLOC_014906Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026506-exon-sc0000574-1491911889:6111..6968TCONS_00026506-exon-sc0000574-1491911889:6111..6968Clytia hemisphaericaexon
TCONS_00026506-exon-sc0000574-1510915933:6111..6968TCONS_00026506-exon-sc0000574-1510915933:6111..6968Clytia hemisphaericaexon
TCONS_00026506-exon-sc0000574-1575043694:6111..6968TCONS_00026506-exon-sc0000574-1575043694:6111..6968Clytia hemisphaericaexon
TCONS_00026506-exon-sc0000574-1491911889:8008..8090TCONS_00026506-exon-sc0000574-1491911889:8008..8090Clytia hemisphaericaexon
TCONS_00026506-exon-sc0000574-1510915933:8008..8090TCONS_00026506-exon-sc0000574-1510915933:8008..8090Clytia hemisphaericaexon
TCONS_00026506-exon-sc0000574-1575043694:8008..8090TCONS_00026506-exon-sc0000574-1575043694:8008..8090Clytia hemisphaericaexon
TCONS_00026506-exon-sc0000574-1491911889:8488..9005TCONS_00026506-exon-sc0000574-1491911889:8488..9005Clytia hemisphaericaexon
TCONS_00026506-exon-sc0000574-1510915933:8488..9005TCONS_00026506-exon-sc0000574-1510915933:8488..9005Clytia hemisphaericaexon
TCONS_00026506-exon-sc0000574-1575043694:8488..9005TCONS_00026506-exon-sc0000574-1575043694:8488..9005Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000574supercontigsc0000574:6111..9005 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.4652	9.8246	4.88332	4.24122	6.07659	5.10691	4.11141	5.06222	3.35388	5.22705	5.47933	3.29321	3.33944	3.93393	3.4624	5.68044	4.06651	4.88171	2.25413	2.55107	4.29665	4.71656	6.95106	7.92269	4.08002	4.6344	2.3176	2.62116	4.37431	6.78869
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026506 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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