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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026501 ID=TCONS_00026501|Name=TCONS_00026501|organism=Clytia hemisphaerica|type=transcript|length=1645bp
CGAATACCGAGACTCAACATTCGGGCACTTCTTCTCGAACATCAAGTGAG
TCATCAACTTCATCACAAAATCTCCGAAAAGCATCTGGAATCAAACATAT
GCAAATCATCAACCCTGACCAAATGGAAGGGAGCAAATCTCCAATCTTGA
AACGCAAATCTAACCCAACATCAGGGAAATCTGATAATCCGGCGATAACC
GTTTCGGGGAAATCCAAAAACTCATCTTTACCAGACTCGGGAAAATCTAA
AAACCGATCAAAATCGCAACTGGAGAATTCAAAATCCAGTCAGAATTCTT
TGACCGTCACCGTAGCTGACCAAAGCTACGAATCTGATTCTGAagagaaa
aaatcttcaaaaccaCTTACCAAAAGTAGGTCATTCAGTCTCGGTCGTGT
ATTATCGTTTcggaaaaacaaaacaaagagtaTTGACAGCGTTGATGGTT
CTGACAGCCCTGCAATCGCCAATAAAAAAGGTTCTAAAGATAAAACTAAA
ACTAAGAATCGTAGCAAATCTGAATCTCATCCATTGGTGGATAGCTCTCA
AAGAGAATCTGAAGAAATGTCATCTGGCTATAAAAGCCCTGGTGAATTCA
AACCTGATCATTCTCAGTCAGGTAGTGGATATCCTGACAGCGATGGCGAT
TCTGAATTTGATATGATTGACAATGACGATATTGAGTTCAATGTGGATTC
TATTGATAAAGGTGATATGGATTTATCAAGTTTGATTGATTTTGCTGCAG
TGTTGTCATCCAGTAGTTCACCAACAATGGACGACGATGATGAGGAACCT
ATCGCTGTTTAATTTTACATTCTGATGTGTATTGGTATTTAGCAACCTTG
TTTCCAAGCCTAAtacacccttctcacagacccagtaggatgTTTTCAGC
CAGTTGGCTAGAGATAACAGACTGAAACTCCATGTGGATTGATACTCCCA
TATTTTCTATGGCGGAGgatatcaattcttttgttttaaagtcaaGAAAT
TTAATGGGGATTTTCAACCGGGAAcgatatttttgtcaatttttccagtg
ggaatggTTCCCGGTGGGTGAGAAGGGGATGTCCTAATCTCTATCTAGAA
GTAAACTTATGTATTAATTTTTATAGTAAGTCTTATGAATGTAGTCGAAG
GTAACCCGCAGATTCCTCTTTTGTTTGGTATCTGCACGACCAGCTATTTT
CTCTCCACTTTAATTTGTGAATTCTTAGAAAAGAAGCACCAAGTACAATC
GCCttttagtgtggtcgtgttacaaaagtacaggctgtttgtaggaaaaa
aataatatatagctgaaactttctccagaccttctctatagggtgcttat
gcctcaggaaaaaatcccctaaaatcccactggtggaacatccctttttt
gggcaatttcttttttccccaggcaaaaccctaaggtcaaaaatttttga
aaatgtcaaactctttttgagacaacatcatgtataccattcgaaagctc
tcaaaaaactatatagaagactttcagacgggtatagccgatttcatcac
ctaactcgagataattcacgcagaagatgcaatttttggtcaattttaga
ccaaaatgtggcgaaaagtggaacttgcgcatgaaatatctcgag Run BLAST on NCBI protein sequence of TCONS_00026501-protein >TCONS_00026501-protein ID=TCONS_00026501-protein|Name=TCONS_00026501-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
NTETQHSGTSSRTSSESSTSSQNLRKASGIKHMQIINPDQMEGSKSPILK
RKSNPTSGKSDNPAITVSGKSKNSSLPDSGKSKNRSKSQLENSKSSQNSL
TVTVADQSYESDSEEKKSSKPLTKSRSFSLGRVLSFRKNKTKSIDSVDGS
DSPAIANKKGSKDKTKTKNRSKSESHPLVDSSQRESEEMSSGYKSPGEFK
PDHSQSGSGYPDSDGDSEFDMIDNDDIEFNVDSIDKGDMDLSSLIDFAAV
LSSSSSPTMDDDDEEPIAV Run BLAST on NCBI transcript from alignment at sc0000573:170027..171671 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026501 ID=TCONS_00026501|Name=TCONS_00026501|organism=Clytia hemisphaerica|type=transcript|length=1645bp|location=Sequence derived from alignment at sc0000573:170027..171671 (Clytia hemisphaerica)
ctcgagatatttcatgcgcaagttccacttttcgccacattttggtctaa
aattgaccaaaaattgcatcttctgcgtgaattatctcgagttaggtgat
gaaatcggctatacccgtctgaaagtcttctatatagttttttgagagct
ttcgaatggtatacatgatgttgtctcaaaaagagtttgacattttcaaa
aatttttgaccttagggttttgcctggggaaaaaagaaattgcccaaaaa
agggatgttccaccagtgggattttaggggattttttcctgaggcataag
caccctatagagaaggtctggagaaagtttcagctatatattattttttt
cctacaaacagcctgtacttttgtaacacgaccacactaaaaGGCGATTG
TACTTGGTGCTTCTTTTCTAAGAATTCACAAATTAAAGTGGAGAGAAAAT
AGCTGGTCGTGCAGATACCAAACAAAAGAGGAATCTGCGGGTTACCTTCG
ACTACATTCATAAGACTTACTATAAAAATTAATACATAAGTTTACTTCTA
GATAGAGATTAGGACATCCCCTTCTCACCCACCGGGAAccattcccactg
gaaaaattgacaaaaatatcgTTCCCGGTTGAAAATCCCCATTAAATTTC
ttgactttaaaacaaaagaattgatatcCTCCGCCATAGAAAATATGGGA
GTATCAATCCACATGGAGTTTCAGTCTGTTATCTCTAGCCAACTGGCTGA
AAAcatcctactgggtctgtgagaagggtgtaTTAGGCTTGGAAACAAGG
TTGCTAAATACCAATACACATCAGAATGTAAAATTAAACAGCGATAGGTT
CCTCATCATCGTCGTCCATTGTTGGTGAACTACTGGATGACAACACTGCA
GCAAAATCAATCAAACTTGATAAATCCATATCACCTTTATCAATAGAATC
CACATTGAACTCAATATCGTCATTGTCAATCATATCAAATTCAGAATCGC
CATCGCTGTCAGGATATCCACTACCTGACTGAGAATGATCAGGTTTGAAT
TCACCAGGGCTTTTATAGCCAGATGACATTTCTTCAGATTCTCTTTGAGA
GCTATCCACCAATGGATGAGATTCAGATTTGCTACGATTCTTAGTTTTAG
TTTTATCTTTAGAACCTTTTTTATTGGCGATTGCAGGGCTGTCAGAACCA
TCAACGCTGTCAAtactctttgttttgtttttccgAAACGATAATACACG
ACCGAGACTGAATGACCTACTTTTGGTAAGtggttttgaagattttttct
ctTCAGAATCAGATTCGTAGCTTTGGTCAGCTACGGTGACGGTCAAAGAA
TTCTGACTGGATTTTGAATTCTCCAGTTGCGATTTTGATCGGTTTTTAGA
TTTTCCCGAGTCTGGTAAAGATGAGTTTTTGGATTTCCCCGAAACGGTTA
TCGCCGGATTATCAGATTTCCCTGATGTTGGGTTAGATTTGCGTTTCAAG
ATTGGAGATTTGCTCCCTTCCATTTGGTCAGGGTTGATGATTTGCATATG
TTTGATTCCAGATGCTTTTCGGAGATTTTGTGATGAAGTTGATGACTCAC
TTGATGTTCGAGAAGAAGTGCCCGAATGTTGAGTCTCGGTATTCG Coding sequence (CDS) from alignment at sc0000573:170027..171671 >TCONS_00026501 ID=TCONS_00026501|Name=TCONS_00026501|organism=Clytia hemisphaerica|type=CDS|length=810bp|location=Sequence derived from alignment at sc0000573:170027..171671 (Clytia hemisphaerica)
TTAAACAGCGATAGGTTCCTCATCATCGTCGTCCATTGTTGGTGAACTAC
TGGATGACAACACTGCAGCAAAATCAATCAAACTTGATAAATCCATATCA
CCTTTATCAATAGAATCCACATTGAACTCAATATCGTCATTGTCAATCAT
ATCAAATTCAGAATCGCCATCGCTGTCAGGATATCCACTACCTGACTGAG
AATGATCAGGTTTGAATTCACCAGGGCTTTTATAGCCAGATGACATTTCT
TCAGATTCTCTTTGAGAGCTATCCACCAATGGATGAGATTCAGATTTGCT
ACGATTCTTAGTTTTAGTTTTATCTTTAGAACCTTTTTTATTGGCGATTG
CAGGGCTGTCAGAACCATCAACGCTGTCAAtactctttgttttgtttttc
cgAAACGATAATACACGACCGAGACTGAATGACCTACTTTTGGTAAGtgg
ttttgaagattttttctctTCAGAATCAGATTCGTAGCTTTGGTCAGCTA
CGGTGACGGTCAAAGAATTCTGACTGGATTTTGAATTCTCCAGTTGCGAT
TTTGATCGGTTTTTAGATTTTCCCGAGTCTGGTAAAGATGAGTTTTTGGA
TTTCCCCGAAACGGTTATCGCCGGATTATCAGATTTCCCTGATGTTGGGT
TAGATTTGCGTTTCAAGATTGGAGATTTGCTCCCTTCCATTTGGTCAGGG
TTGATGATTTGCATATGTTTGATTCCAGATGCTTTTCGGAGATTTTGTGA
TGAAGTTGATGACTCACTTGATGTTCGAGAAGAAGTGCCCGAATGTTGAG
TCTCGGTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026501-exon-sc0000573-1491911889:170027..171671 | TCONS_00026501-exon-sc0000573-1491911889:170027..171671 | Clytia hemisphaerica | exon |
| TCONS_00026501-exon-sc0000573-1510915933:170027..171671 | TCONS_00026501-exon-sc0000573-1510915933:170027..171671 | Clytia hemisphaerica | exon |
| TCONS_00026501-exon-sc0000573-1575043694:170027..171671 | TCONS_00026501-exon-sc0000573-1575043694:170027..171671 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000573 | supercontig | sc0000573:170027..171671 . |
Blast
The following BLAST results are available for this feature:
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