|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026500 ID=TCONS_00026500|Name=TCONS_00026500|organism=Clytia hemisphaerica|type=transcript|length=1260bp
GTTTCCAGCCAATTTTTAAGGTTTAGAGAGCCGTGTTACCAGTGATAGaa
tattaaaataatattttcagaaATAAATAAGGAAATGTACCATATAAAGA
ATACAATTATAAAGGGTGAGTGTATACACGGTGTATCATCGACGATGTGA
TATTTTATTATACTTCATACTATCCATTTAGTTGTAGTGAAGTTAGTTTT
TTCATTACAATACACTTAAAATTGCTTCTTAGGAAATGCCATCTCGGAGA
TCGTGTACATGATTGAAGACGTGATATCAACAATCGATGGTTCACCGGTC
TTTGTGTTGAGGGACTTGGTGACCAAATACAAGGAGATACTAAGGACTCT
CGGAGCCCCAGAAGAATTCGTTGAAAAAGTCCACAGCACTCGATTTAAAC
AAGCCATTTTGAAGAGGATTGGATGTTTGTGTGAGAGTAAGAAAGGACGA
GATGTTATTCTGGCTCTCGAAGATCATATTGGACAAGCTATCTTTCAAGC
ATCGCGAATGACTGCATTTGATGAAGGAATAATTTTGACCAAAGCTGCAA
ACATTATCCGCCGTCATCTATTCAAATCTGATGTAACATTCACTGGTGAC
TTCaccaaagaaaaacaaacgGCTTCAGTCCCAAAGGAATTAATCTCTTT
AATTGGTTGTATCTTAGAACGCACACCAGAGAACCAGCAAAGCTCTGAAA
ACACCAGAAGTATAGCACTAAATCTATCACAACTCATCAAATTCAATGCT
GTCAAAACACAATGGAAGGATGAAAGCAATCATATACGTCATTCATCAAC
AAATGAGCCACCACTTCCAGCAAAGATCGGCTTGATGCTGCATTCGAAAA
CAAGGAAGAAGGATATCATCAACAATTTAGCTGCCAAGGGATTGAGTATC
TCTTACAACCGTGTAACCGAGATCCAAGACTCTATTACCCACCAACTATG
TGAAAAGTATCAGATGGAAAACTTGGTTTGTCCATACTCATTGTTAATGG
ACCTCTTCACGTTTGCTGCCTTAGACAACGTCGACCACGACCCGTCTTCC
TCAACAGCCACTTCATCTTTCCATGGAACCAGTGTTACTATCTTTCAGCA
ATATGAGGGTGAGATGAGAAAACAACCCTTAGTTATGAAAGAAAGTAAAG
AGAAAACGATCCAACTTCCTGAATACTACACAGACATTAAACCAGCCAAG
AATTCAAAACCAGAATATCCAGCAACTTCACAACGCCAACCTGCAGTAAC
AGAACCGGAT Run BLAST on NCBI protein sequence of TCONS_00026500-protein >TCONS_00026500-protein ID=TCONS_00026500-protein|Name=TCONS_00026500-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
MIEDVISTIDGSPVFVLRDLVTKYKEILRTLGAPEEFVEKVHSTRFKQAI
LKRIGCLCESKKGRDVILALEDHIGQAIFQASRMTAFDEGIILTKAANII
RRHLFKSDVTFTGDFTKEKQTASVPKELISLIGCILERTPENQQSSENTR
SIALNLSQLIKFNAVKTQWKDESNHIRHSSTNEPPLPAKIGLMLHSKTRK
KDIINNLAAKGLSISYNRVTEIQDSITHQLCEKYQMENLVCPYSLLMDLF
TFAALDNVDHDPSSSTATSSFHGTSVTIFQQYEGEMRKQPLVMKESKEKT
IQLPEYYTDIKPAKNSKPEYPATSQRQPAVTEPD Run BLAST on NCBI transcript from alignment at sc0000573:156301..157560 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026500 ID=TCONS_00026500|Name=TCONS_00026500|organism=Clytia hemisphaerica|type=transcript|length=1260bp|location=Sequence derived from alignment at sc0000573:156301..157560 (Clytia hemisphaerica)
ATCCGGTTCTGTTACTGCAGGTTGGCGTTGTGAAGTTGCTGGATATTCTG
GTTTTGAATTCTTGGCTGGTTTAATGTCTGTGTAGTATTCAGGAAGTTGG
ATCGTTTTCTCTTTACTTTCTTTCATAACTAAGGGTTGTTTTCTCATCTC
ACCCTCATATTGCTGAAAGATAGTAACACTGGTTCCATGGAAAGATGAAG
TGGCTGTTGAGGAAGACGGGTCGTGGTCGACGTTGTCTAAGGCAGCAAAC
GTGAAGAGGTCCATTAACAATGAGTATGGACAAACCAAGTTTTCCATCTG
ATACTTTTCACATAGTTGGTGGGTAATAGAGTCTTGGATCTCGGTTACAC
GGTTGTAAGAGATACTCAATCCCTTGGCAGCTAAATTGTTGATGATATCC
TTCTTCCTTGTTTTCGAATGCAGCATCAAGCCGATCTTTGCTGGAAGTGG
TGGCTCATTTGTTGATGAATGACGTATATGATTGCTTTCATCCTTCCATT
GTGTTTTGACAGCATTGAATTTGATGAGTTGTGATAGATTTAGTGCTATA
CTTCTGGTGTTTTCAGAGCTTTGCTGGTTCTCTGGTGTGCGTTCTAAGAT
ACAACCAATTAAAGAGATTAATTCCTTTGGGACTGAAGCcgtttgttttt
ctttggtGAAGTCACCAGTGAATGTTACATCAGATTTGAATAGATGACGG
CGGATAATGTTTGCAGCTTTGGTCAAAATTATTCCTTCATCAAATGCAGT
CATTCGCGATGCTTGAAAGATAGCTTGTCCAATATGATCTTCGAGAGCCA
GAATAACATCTCGTCCTTTCTTACTCTCACACAAACATCCAATCCTCTTC
AAAATGGCTTGTTTAAATCGAGTGCTGTGGACTTTTTCAACGAATTCTTC
TGGGGCTCCGAGAGTCCTTAGTATCTCCTTGTATTTGGTCACCAAGTCCC
TCAACACAAAGACCGGTGAACCATCGATTGTTGATATCACGTCTTCAATC
ATGTACACGATCTCCGAGATGGCATTTCCTAAGAAGCAATTTTAAGTGTA
TTGTAATGAAAAAACTAACTTCACTACAACTAAATGGATAGTATGAAGTA
TAATAAAATATCACATCGTCGATGATACACCGTGTATACACTCACCCTTT
ATAATTGTATTCTTTATATGGTACATTTCCTTATTTATttctgaaaatat
tattttaatattCTATCACTGGTAACACGGCTCTCTAAACCTTAAAAATT
GGCTGGAAAC Coding sequence (CDS) from alignment at sc0000573:156301..157560 >TCONS_00026500 ID=TCONS_00026500|Name=TCONS_00026500|organism=Clytia hemisphaerica|type=CDS|length=1002bp|location=Sequence derived from alignment at sc0000573:156301..157560 (Clytia hemisphaerica)
ATCCGGTTCTGTTACTGCAGGTTGGCGTTGTGAAGTTGCTGGATATTCTG
GTTTTGAATTCTTGGCTGGTTTAATGTCTGTGTAGTATTCAGGAAGTTGG
ATCGTTTTCTCTTTACTTTCTTTCATAACTAAGGGTTGTTTTCTCATCTC
ACCCTCATATTGCTGAAAGATAGTAACACTGGTTCCATGGAAAGATGAAG
TGGCTGTTGAGGAAGACGGGTCGTGGTCGACGTTGTCTAAGGCAGCAAAC
GTGAAGAGGTCCATTAACAATGAGTATGGACAAACCAAGTTTTCCATCTG
ATACTTTTCACATAGTTGGTGGGTAATAGAGTCTTGGATCTCGGTTACAC
GGTTGTAAGAGATACTCAATCCCTTGGCAGCTAAATTGTTGATGATATCC
TTCTTCCTTGTTTTCGAATGCAGCATCAAGCCGATCTTTGCTGGAAGTGG
TGGCTCATTTGTTGATGAATGACGTATATGATTGCTTTCATCCTTCCATT
GTGTTTTGACAGCATTGAATTTGATGAGTTGTGATAGATTTAGTGCTATA
CTTCTGGTGTTTTCAGAGCTTTGCTGGTTCTCTGGTGTGCGTTCTAAGAT
ACAACCAATTAAAGAGATTAATTCCTTTGGGACTGAAGCcgtttgttttt
ctttggtGAAGTCACCAGTGAATGTTACATCAGATTTGAATAGATGACGG
CGGATAATGTTTGCAGCTTTGGTCAAAATTATTCCTTCATCAAATGCAGT
CATTCGCGATGCTTGAAAGATAGCTTGTCCAATATGATCTTCGAGAGCCA
GAATAACATCTCGTCCTTTCTTACTCTCACACAAACATCCAATCCTCTTC
AAAATGGCTTGTTTAAATCGAGTGCTGTGGACTTTTTCAACGAATTCTTC
TGGGGCTCCGAGAGTCCTTAGTATCTCCTTGTATTTGGTCACCAAGTCCC
TCAACACAAAGACCGGTGAACCATCGATTGTTGATATCACGTCTTCAATC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026500-exon-sc0000573-1491911889:156301..157560 | TCONS_00026500-exon-sc0000573-1491911889:156301..157560 | Clytia hemisphaerica | exon |
| TCONS_00026500-exon-sc0000573-1510915933:156301..157560 | TCONS_00026500-exon-sc0000573-1510915933:156301..157560 | Clytia hemisphaerica | exon |
| TCONS_00026500-exon-sc0000573-1575043694:156301..157560 | TCONS_00026500-exon-sc0000573-1575043694:156301..157560 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000573 | supercontig | sc0000573:156301..157560 . |
Blast
The following BLAST results are available for this feature:
|
