TCONS_00026486 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026486
Unique NameTCONS_00026486
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length539

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026486 ID=TCONS_00026486|Name=TCONS_00026486|organism=Clytia hemisphaerica|type=transcript|length=539bp
ATCAAAATTGCTTCCTAGTAAGTTTTCTGAGCTAgaatttcaaaggtttt
tttagtttttttgaacTTTCCGAAATATTCCGGCCATTCCAGGAATATCT
GGTCCTCTCGATAATATACTGAGTCTACAGTATCAGTCCATACCTTTTGT
TGATTCTAGGCATCATGGTCAGTTTTNCCGGCCATTCCAGGAATATCCGG
CCCTCTCGATAATGTACTGAGTCTACAGTATCAGTCCATACCTTTTGTTG
ATTCTAGGCATCATGGTCAGTTTTTAGCTTTCTTCAGTCTTTGATGATAT
TGTTTAGTTGTTTAGATACTTTAATCTTATTTTGTCTTAAATcgtccttt
tgaaaaaaaatacgttTACGGATTTTGGCACTTTGTGGAAAGTCCGGAAT
CCCATATTTTGGTTAAGATCTTATGTTAAGATTGAAATATTTGGCCTTTT
TTCATCACTTGTTCGATCCCAAAATCGATCTCTTTAAGTTCTACGGGCTT
TAATGTGCTTGGTGCAAAAAGTTACACACAAATATTGTG
Run BLAST on NCBI

transcript from alignment at sc0000573:35089..35627

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026486 ID=TCONS_00026486|Name=TCONS_00026486|organism=Clytia hemisphaerica|type=transcript|length=539bp|location=Sequence derived from alignment at sc0000573:35089..35627 (Clytia hemisphaerica)
CACAATATTTGTGTGTAACTTTTTGCACCAAGCACATTAAAGCCCGTAGA
ACTTAAAGAGATCGATTTTGGGATCGAACAAGTGATGAAAAAAGGCCAAA
TATTTCAATCTTAACATAAGATCTTAACCAAAATATGGGATTCCGGACTT
TCCACAAAGTGCCAAAATCCGTAaacgtattttttttcaaaaggacgATT
TAAGACAAAATAAGATTAAAGTATCTAAACAACTAAACAATATCATCAAA
GACTGAAGAAAGCTAAAAACTGACCATGATGCCTAGAATCAACAAAAGGT
ATGGACTGATACTGTAGACTCAGTACATTATCGAGAGGGCCGGATATTCC
TGGAATGGCCGGNAAAACTGACCATGATGCCTAGAATCAACAAAAGGTAT
GGACTGATACTGTAGACTCAGTATATTATCGAGAGGACCAGATATTCCTG
GAATGGCCGGAATATTTCGGAAAgttcaaaaaaactaaaaaaacctttga
aattcTAGCTCAGAAAACTTACTAGGAAGCAATTTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014887XLOC_014887Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026486-exon-sc0000573-1491911889:35089..35627TCONS_00026486-exon-sc0000573-1491911889:35089..35627Clytia hemisphaericaexon
TCONS_00026486-exon-sc0000573-1510915933:35089..35627TCONS_00026486-exon-sc0000573-1510915933:35089..35627Clytia hemisphaericaexon
TCONS_00026486-exon-sc0000573-1575043694:35089..35627TCONS_00026486-exon-sc0000573-1575043694:35089..35627Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000573supercontigsc0000573:35089..35627 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.430033	0.41935	1.70417	0.833632	1.44981	0.687395	0.276438	0.646994	0	0	0.10892	0.0715999	0.429002	0	0.0610468	0.131025	0.40353	0.413606	0	0.11959	0.20789	0.304205	0	0.112068	0.923415	0.927142	0.29483	0.157326	0.119326	0.121574
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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