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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026477 ID=TCONS_00026477|Name=TCONS_00026477|organism=Clytia hemisphaerica|type=transcript|length=2419bpRun BLAST on NCBI protein sequence of TCONS_00026477-protein >TCONS_00026477-protein ID=TCONS_00026477-protein|Name=TCONS_00026477-protein|organism=Clytia hemisphaerica|type=polypeptide|length=692bp MKDFPNRKLSRTSTTVLTGKMKLTVHYKGQIYVVPCGNGNDTIKWLKEEARun BLAST on NCBI transcript from alignment at sc0000573:167048..202046- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026477 ID=TCONS_00026477|Name=TCONS_00026477|organism=Clytia hemisphaerica|type=transcript|length=34999bp|location=Sequence derived from alignment at sc0000573:167048..202046- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000573:167048..202046- >TCONS_00026477 ID=TCONS_00026477|Name=TCONS_00026477|organism=Clytia hemisphaerica|type=CDS|length=45738bp|location=Sequence derived from alignment at sc0000573:167048..202046- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00026477 vs. Swiss-Prot (Human)
Match: HUTH (Histidine ammonia-lyase OS=Homo sapiens GN=HAL PE=1 SV=1) HSP 1 Score: 775.007 bits (2000), Expect = 0.000e+0 Identity = 394/655 (60.15%), Postives = 484/655 (73.89%), Query Frame = 3
Query: 156 KLTVHYKGQIYVVPCGNGNDTIKWLKEEAVKRS-KKLNSTLEHSSLDTLEARLQETHGXXXXXXXXXXXXXXXXXXYISSTDEKTNGEIKINGSRQDDDIFTP--------------PQKILNIDGNTLTSDNLVKCGKGEYKLQLTKESQQKVKNARDLIDNIVAEKRVVYGINTGFGSFARVIIPPEKIKELQENLIRSHASGVGEALTLQRARSLLALRINVLAKGHSGISPENLNKMIAIFNAGCAPYVPERGTVGASGDLAPLSHVALGLMGEGKMWGPKTGWADAAIVLNIHNLKPISLQAKEGLALINGTQLITALGAEALERSIRISRQADVVAALTLEVLKGTSKAFSEEIHNARPHCGQKLVASRLRSLLHSDVYRSEVAESHRFCDRVQDAYTLRCCPQVHGVVHDTIEFVKSIISVELNSATDNPMVFADIGETMSGGNFHGEYPAKSLDYLAIGIHELANMSERRIERLINPAYSGLPAFLTKEGGLNSGLMIAHCTAAALVSENKVLTHPASVDSISTSAGQEDHVSMGGFSARKALTVVEHVEYVLAIELLSACQGIQFLRPLKSTEPLEAVYRLVRSVAKNFNHDRYIAPDIEAVRDLLHKNLIWEAVEPYMKKYEEEMHAKKMAGILSRMPDSPTGYS 2075
+ TVH +G+ VPC + T+ WL EAV+R K +S+D ++ GL + D+ + + ++ E+ I G D F P P+K + +DG+ LT+++LV GKG YK++LT ++++V+ +R++ID+I+ EK VVYGI TGFG FAR +IP K++ELQ NL+RSH+SGVG+ L+ +R R LLALRINVLAKG+SGIS E L ++I +FNA C PYVPE+GTVGASGDLAPLSH+ALGL+GEGKMW PK+GWADA VL H LKP+ L+ KEGLALINGTQ+IT+LG EA+ER+ I+RQAD+VAALTLEVLKGT+KAF +IH RPH GQ VA R RSLL SD + SE+AESHRFCDRVQDAYTLRCCPQVHGVV+DTI FVK+II+ ELNSATDNPMVFA+ GET+SGGNFHGEYPAK+LDYLAIGIHELA +SERRIERL NP+ S LPAFL EGGLNSG MIAHCTAAALVSENK L HP+SVDS+STSA EDHVSMGG++ARKAL V+EHVE VLAIELL+ACQGI+FLRPLK+T PLE VY LVRSV + + DR++APDIEA LL + +WE PY++KY +M I P SPT +S
Sbjct: 3 RYTVHVRGEWLAVPCQDAQLTVGWLGREAVRRYIKNKPDNGGFTSVDDAHFLVRRCKGLGLLDNEDRLEVALENNEFV---------EVVIEGDAMSPD-FIPSQPEGVYLYSKYREPEKYIELDGDRLTTEDLVNLGKGRYKIKLTPTAEKRVQKSREVIDSIIKEKTVVYGITTGFGKFARTVIPINKLQELQVNLVRSHSSGVGKPLSPERCRMLLALRINVLAKGYSGISLETLKQVIEMFNASCLPYVPEKGTVGASGDLAPLSHLALGLVGEGKMWSPKSGWADAKYVLEAHGLKPVILKPKEGLALINGTQMITSLGCEAVERASAIARQADIVAALTLEVLKGTTKAFDTDIHALRPHRGQIEVAFRFRSLLDSDHHPSEIAESHRFCDRVQDAYTLRCCPQVHGVVNDTIAFVKNIITTELNSATDNPMVFANRGETVSGGNFHGEYPAKALDYLAIGIHELAAISERRIERLCNPSLSELPAFLVAEGGLNSGFMIAHCTAAALVSENKALCHPSSVDSLSTSAATEDHVSMGGWAARKALRVIEHVEQVLAIELLAACQGIEFLRPLKTTTPLEKVYDLVRSVVRPWIKDRFMAPDIEAAHRLLLEQKVWEVAAPYIEKY-------RMEHIPESRPLSPTAFS 640 The following BLAST results are available for this feature:
BLAST of TCONS_00026477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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