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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026472 ID=TCONS_00026472|Name=TCONS_00026472|organism=Clytia hemisphaerica|type=transcript|length=639bp
AGGCATATGGATGGCTTCCACAAATTCATACGTTGGAGGTTAGTTATTCA
TGGCTGTATAGATGGATACTCTCGAACCATTactttcttgaaattttctt
ccaataACCGTGCAGACACAGTACTGAATCTATTTTTGAATAGTTTACAT
CAGTTTCGTTGCCCAATAAGAATTCGTAATGATCATGGCATGGAGAATAC
AGCAGTTGCAAGATGGATGCTAGAAAGATTTGGTGTTGATAAGAAGCCGT
TTATCACTGATTTGTTCAGATCAATGGAAGCAATTGATTATCTTGATCCG
GATAACGAGCTCCATTTGTTTTGTTTGTACTACATTTTCATTCCACGAAT
CAACAGGCCTTTAAATGAGTTTGCAAGTACCTGGAATAACCATCCTTTGA
GAACAGAAGGAAATTTGACCCCCATTCAAGTTTGGACACGTGGCTTTTTT
GAAACCGAGACACTAATGGAAGACACCTCGCTAATATATGAAGATTATGG
AGTTGATAATTATGGGCCTGAGCCTGAGCTGCAAACAGACAACTATGTAG
AAATTCCAGAAATAGATAACATATTAACAGAAGAAGAACAATATATCAGT
GAAAATTTCAATCCCTTGATAAATGATTGAAATCATGGT Run BLAST on NCBI protein sequence of TCONS_00026472-protein >TCONS_00026472-protein ID=TCONS_00026472-protein|Name=TCONS_00026472-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
RHMDGFHKFIRWRLVIHGCIDGYSRTITFLKFSSNNRADTVLNLFLNSLH
QFRCPIRIRNDHGMENTAVARWMLERFGVDKKPFITDLFRSMEAIDYLDP
DNELHLFCLYYIFIPRINRPLNEFASTWNNHPLRTEGNLTPIQVWTRGFF
ETETLMEDTSLIYEDYGVDNYGPEPELQTDNYVEIPEIDNILTEEEQYIS
ENFNPLIND Run BLAST on NCBI transcript from alignment at sc0000573:108223..108936+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026472 ID=TCONS_00026472|Name=TCONS_00026472|organism=Clytia hemisphaerica|type=transcript|length=714bp|location=Sequence derived from alignment at sc0000573:108223..108936+ (Clytia hemisphaerica)
AGGCATATGGATGGCTTCCACAAATTCATACGTTGGAGGTTAGTTATTCA
TGGCTGTATAGATGGATACTCTCGAACCATTactttcttgaaattttctt
ccaataACCGTGCAGACACAGTACTGAATCTATTTTTGAATAGTTTACAT
CAGTTTCGTTGCCCAATAAGAATTCGTAATGATCATGGCATGGAGAATAC
AGCAGTTGCAAGATGGATGCTAGAAAGATTTGGTGTTGATAAGAAGCCGT
TTATCACTGGTAGGTCAGTCCATAACCAACGCATTGAAAGATTATGGGTT
GACGTAAAAGTGTATGTTGCTATCCTTTTTATAGATTTGTTCAGATCAAT
GGAAGCAATTGATTATCTTGATCCGGATAACGAGCTCCATTTGTTTTGTT
TGTACTACATTTTCATTCCACGAATCAACAGGCCTTTAAATGAGTTTGCA
AGTACCTGGAATAACCATCCTTTGAGAACAGAAGGAAATTTGACCCCCAT
TCAAGTTTGGACACGTGGCTTTTTTGAAACCGAGACACTAATGGAAGACA
CCTCGCTAATATATGAAGATTATGGAGTTGATAATTATGGGCCTGAGCCT
GAGCTGCAAACAGACAACTATGTAGAAATTCCAGAAATAGATAACATATT
AACAGAAGAAGAACAATATATCAGTGAAAATTTCAATCCCTTGATAAATG
ATTGAAATCATGGT Coding sequence (CDS) from alignment at sc0000573:108223..108936+ >TCONS_00026472 ID=TCONS_00026472|Name=TCONS_00026472|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at sc0000573:108223..108936+ (Clytia hemisphaerica)
AGGCATATGGATGGCTTCCACAAATTCATACGTTGGAGGTTAGTTATTCA
TGGCTGTATAGATGGATACTCTCGAACCATTactttcttgaaattttctt
ccaataACCGTGCAGACACAGTACTGAATCTATTTTTGAATAGTTTACAT
CAGTTTCGTTGCCCAATAAGAATTCGTAATGATCATGGCATGGAGAATAC
AGCAGTTGCAAGATGGATGCTAGAAAGATTTGGTGTTGATAAGAAGCCGT
TTATCACTGATTTGTTCAGATCAATGGAAGCAATTGATTATCTTGATCCG
GATAACGAGCTCCATTTGTTTTGTTTGTACTACATTTTCATTCCACGAAT
CAACAGGCCTTTAAATGAGTTTGCAAGTACCTGGAATAACCATCCTTTGA
GAACAGAAGGAAATTTGACCCCCATTCAAGTTTGGACACGTGGCTTTTTT
GAAACCGAGACACTAATGGAAGACACCTCGCTAATATATGAAGATTATGG
AGTTGATAATTATGGGCCTGAGCCTGAGCTGCAAACAGACAACTATGTAG
AAATTCCAGAAATAGATAACATATTAACAGAAGAAGAACAATATATCAGT
GAAAATTTCAATCCCTTGATAAATGATTGAAGGCATATGGATGGCTTCCA
CAAATTCATACGTTGGAGGTTAGTTATTCATGGCTGTATAGATGGATACT
CTCGAACCATTactttcttgaaattttcttccaataACCGTGCAGACACA
GTACTGAATCTATTTTTGAATAGTTTACATCAGTTTCGTTGCCCAATAAG
AATTCGTAATGATCATGGCATGGAGAATACAGCAGTTGCAAGATGGATGC
TAGAAAGATTTGGTGTTGATAAGAAGCCGTTTATCACTGATTTGTTCAGA
TCAATGGAAGCAATTGATTATCTTGATCCGGATAACGAGCTCCATTTGTT
TTGTTTGTACTACATTTTCATTCCACGAATCAACAGGCCTTTAAATGAGT
TTGCAAGTACCTGGAATAACCATCCTTTGAGAACAGAAGGAAATTTGACC
CCCATTCAAGTTTGGACACGTGGCTTTTTTGAAACCGAGACACTAATGGA
AGACACCTCGCTAATATATGAAGATTATGGAGTTGATAATTATGGGCCTG
AGCCTGAGCTGCAAACAGACAACTATGTAGAAATTCCAGAAATAGATAAC
ATATTAACAGAAGAAGAACAATATATCAGTGAAAATTTCAATCCCTTGAT
AAATGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026472-exon-sc0000573-1491911889:108223..108481 | TCONS_00026472-exon-sc0000573-1491911889:108223..108481 | Clytia hemisphaerica | exon |
| TCONS_00026472-exon-sc0000573-1510915933:108223..108481 | TCONS_00026472-exon-sc0000573-1510915933:108223..108481 | Clytia hemisphaerica | exon |
| TCONS_00026472-exon-sc0000573-1575043694:108223..108481 | TCONS_00026472-exon-sc0000573-1575043694:108223..108481 | Clytia hemisphaerica | exon |
| TCONS_00026472-exon-sc0000573-1491911889:108557..108936 | TCONS_00026472-exon-sc0000573-1491911889:108557..108936 | Clytia hemisphaerica | exon |
| TCONS_00026472-exon-sc0000573-1510915933:108557..108936 | TCONS_00026472-exon-sc0000573-1510915933:108557..108936 | Clytia hemisphaerica | exon |
| TCONS_00026472-exon-sc0000573-1575043694:108557..108936 | TCONS_00026472-exon-sc0000573-1575043694:108557..108936 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000573 | supercontig | sc0000573:108223..108936 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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