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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026464 ID=TCONS_00026464|Name=TCONS_00026464|organism=Clytia hemisphaerica|type=transcript|length=1345bp
NNAAGAAATATGAGTGAACTCATGAAAAAGGCACACAAAGAAGCATCCGG
AAAAGATGTAAAAGATAAATTACGTGCTGTTGGCAATGTCTTTCTAACTA
AACGTGAAGTATCGACTCATGAAGCCATTAAGCGAACGCTGTCTTTGAAG
ATGAGAACTTCTAATATCAATGTAGAATTCGTTATAACAGGCCCAAAAGA
AAAACGTACACGAATCCTGAAAAGCCCATCTGAACTTACAAAACTTGACC
CAGATTCCAAGAACGTTTACAAAAACAGTATGTTCGATAAGTATGAGAAT
CGTCCTAACAAATTAAAATATATGTGCTTAGCAGACTTTGCTTCTATTTA
TACGTAtccaaagaaaaatgaaaatgaagaagaaatagaagaaccAAATG
AAACAGATGATGAAATAGTTGAAACTCTAGAGATGGATAACAATGCTCCA
AAAACCATTACATTAAACAACGGAAtgggaaaaatgagaaaacgaAGTCG
TCCATGTGTAATACGTTATCACAAGGTCAGCAAACTCAAAGAAAGAAACG
AATATTTCATGGTACTCCTCCAATTATTTATGCcttgggaaaatgaaaat
gaattaaAAGGCCAGTTTGCaacatttgaagaaaaattcaatcaagtaga
aaatgaaatcaaaccaaatattcTAAAACACGATCCTTATTTTGGTAGAA
TGGATGACGTCGATTTGAATGATATACATGTGTATGATAGTTCCGACTCT
GAAAATAGTGACAACGAACAAGATGATGATTTTCGTATTATTCACCCAGA
TTTGATTGATTTAGATTATGAAAATGATTCCAATGATGCAACTAATGAAG
CCTCTTCAGTTACATTTACGACATCTGACCAAAATCTTATTATGTCTCTT
GATACATTTTACAATATGTGCTCCAACTTAAATGTAAAACAgcgaaattt
tttcaattttgtgttCAAGTATGTACTGACTcacaaatttttagaaaaaa
taccATCAATTGAAAAACCAAATCCATTTAGACTTTTCTTAAGTGGTGGT
GCAGGCGTTggaaaaagctttttgataaaatgtttgacagaacaactgaa
aaaaattctgaaagaacCAGGACAAAATATTGATAGAGAACCATCTGTTT
TTGTAACAGCATCAACCGGTAAAGCGGCAGCAAATGTTGACGGTACTACT
TTGCATTCAGCTTTCATGTTACCAGTCTATGATGAAGGAAGAGGAATTGT
GCAAAAACGAAATTTAACTGGAAATGTATTACATGAATTAAGgttgaaat
tcaaatatttaaaggttttattgaTTGACGAGATCTCAATGATAG Run BLAST on NCBI protein sequence of TCONS_00026464-protein >TCONS_00026464-protein ID=TCONS_00026464-protein|Name=TCONS_00026464-protein|organism=Clytia hemisphaerica|type=polypeptide|length=448bp
XRNMSELMKKAHKEASGKDVKDKLRAVGNVFLTKREVSTHEAIKRTLSLK
MRTSNINVEFVITGPKEKRTRILKSPSELTKLDPDSKNVYKNSMFDKYEN
RPNKLKYMCLADFASIYTYPKKNENEEEIEEPNETDDEIVETLEMDNNAP
KTITLNNGMGKMRKRSRPCVIRYHKVSKLKERNEYFMVLLQLFMPWENEN
ELKGQFATFEEKFNQVENEIKPNILKHDPYFGRMDDVDLNDIHVYDSSDS
ENSDNEQDDDFRIIHPDLIDLDYENDSNDATNEASSVTFTTSDQNLIMSL
DTFYNMCSNLNVKQRNFFNFVFKYVLTHKFLEKIPSIEKPNPFRLFLSGG
AGVGKSFLIKCLTEQLKKILKEPGQNIDREPSVFVTASTGKAAANVDGTT
LHSAFMLPVYDEGRGIVQKRNLTGNVLHELRLKFKYLKVLLIDEISMI Run BLAST on NCBI transcript from alignment at sc0000572:147463..148807 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026464 ID=TCONS_00026464|Name=TCONS_00026464|organism=Clytia hemisphaerica|type=transcript|length=1345bp|location=Sequence derived from alignment at sc0000572:147463..148807 (Clytia hemisphaerica)
CTATCATTGAGATCTCGTCAAtcaataaaacctttaaatatttgaatttc
aacCTTAATTCATGTAATACATTTCCAGTTAAATTTCGTTTTTGCACAAT
TCCTCTTCCTTCATCATAGACTGGTAACATGAAAGCTGAATGCAAAGTAG
TACCGTCAACATTTGCTGCCGCTTTACCGGTTGATGCTGTTACAAAAACA
GATGGTTCTCTATCAATATTTTGTCCTGgttctttcagaatttttttcag
ttgttctgtcaaacattttatcaaaaagctttttccAACGCCTGCACCAC
CACTTAAGAAAAGTCTAAATGGATTTGGTTTTTCAATTGATggtattttt
tctaaaaatttgtgAGTCAGTACATACTTGaacacaaaattgaaaaaatt
tcgcTGTTTTACATTTAAGTTGGAGCACATATTGTAAAATGTATCAAGAG
ACATAATAAGATTTTGGTCAGATGTCGTAAATGTAACTGAAGAGGCTTCA
TTAGTTGCATCATTGGAATCATTTTCATAATCTAAATCAATCAAATCTGG
GTGAATAATACGAAAATCATCATCTTGTTCGTTGTCACTATTTTCAGAGT
CGGAACTATCATACACATGTATATCATTCAAATCGACGTCATCCATTCTA
CCAAAATAAGGATCGTGTTTTAgaatatttggtttgatttcattttctac
ttgattgaatttttcttcaaatgttGCAAACTGGCCTTttaattcatttt
cattttcccaagGCATAAATAATTGGAGGAGTACCATGAAATATTCGTTT
CTTTCTTTGAGTTTGCTGACCTTGTGATAACGTATTACACATGGACGACT
tcgttttctcatttttcccaTTCCGTTGTTTAATGTAATGGTTTTTGGAG
CATTGTTATCCATCTCTAGAGTTTCAACTATTTCATCATCTGTTTCATTT
ggttcttctatttcttcttcattttcatttttctttggaTACGTATAAAT
AGAAGCAAAGTCTGCTAAGCACATATATTTTAATTTGTTAGGACGATTCT
CATACTTATCGAACATACTGTTTTTGTAAACGTTCTTGGAATCTGGGTCA
AGTTTTGTAAGTTCAGATGGGCTTTTCAGGATTCGTGTACGTTTTTCTTT
TGGGCCTGTTATAACGAATTCTACATTGATATTAGAAGTTCTCATCTTCA
AAGACAGCGTTCGCTTAATGGCTTCATGAGTCGATACTTCACGTTTAGTT
AGAAAGACATTGCCAACAGCACGTAATTTATCTTTTACATCTTTTCCGGA
TGCTTCTTTGTGTGCCTTTTTCATGAGTTCACTCATATTTCTTNN Coding sequence (CDS) from alignment at sc0000572:147463..148807 >TCONS_00026464 ID=TCONS_00026464|Name=TCONS_00026464|organism=Clytia hemisphaerica|type=CDS|length=1344bp|location=Sequence derived from alignment at sc0000572:147463..148807 (Clytia hemisphaerica)
TATCATTGAGATCTCGTCAAtcaataaaacctttaaatatttgaatttca
acCTTAATTCATGTAATACATTTCCAGTTAAATTTCGTTTTTGCACAATT
CCTCTTCCTTCATCATAGACTGGTAACATGAAAGCTGAATGCAAAGTAGT
ACCGTCAACATTTGCTGCCGCTTTACCGGTTGATGCTGTTACAAAAACAG
ATGGTTCTCTATCAATATTTTGTCCTGgttctttcagaatttttttcagt
tgttctgtcaaacattttatcaaaaagctttttccAACGCCTGCACCACC
ACTTAAGAAAAGTCTAAATGGATTTGGTTTTTCAATTGATggtatttttt
ctaaaaatttgtgAGTCAGTACATACTTGaacacaaaattgaaaaaattt
cgcTGTTTTACATTTAAGTTGGAGCACATATTGTAAAATGTATCAAGAGA
CATAATAAGATTTTGGTCAGATGTCGTAAATGTAACTGAAGAGGCTTCAT
TAGTTGCATCATTGGAATCATTTTCATAATCTAAATCAATCAAATCTGGG
TGAATAATACGAAAATCATCATCTTGTTCGTTGTCACTATTTTCAGAGTC
GGAACTATCATACACATGTATATCATTCAAATCGACGTCATCCATTCTAC
CAAAATAAGGATCGTGTTTTAgaatatttggtttgatttcattttctact
tgattgaatttttcttcaaatgttGCAAACTGGCCTTttaattcattttc
attttcccaagGCATAAATAATTGGAGGAGTACCATGAAATATTCGTTTC
TTTCTTTGAGTTTGCTGACCTTGTGATAACGTATTACACATGGACGACTt
cgttttctcatttttcccaTTCCGTTGTTTAATGTAATGGTTTTTGGAGC
ATTGTTATCCATCTCTAGAGTTTCAACTATTTCATCATCTGTTTCATTTg
gttcttctatttcttcttcattttcatttttctttggaTACGTATAAATA
GAAGCAAAGTCTGCTAAGCACATATATTTTAATTTGTTAGGACGATTCTC
ATACTTATCGAACATACTGTTTTTGTAAACGTTCTTGGAATCTGGGTCAA
GTTTTGTAAGTTCAGATGGGCTTTTCAGGATTCGTGTACGTTTTTCTTTT
GGGCCTGTTATAACGAATTCTACATTGATATTAGAAGTTCTCATCTTCAA
AGACAGCGTTCGCTTAATGGCTTCATGAGTCGATACTTCACGTTTAGTTA
GAAAGACATTGCCAACAGCACGTAATTTATCTTTTACATCTTTTCCGGAT
GCTTCTTTGTGTGCCTTTTTCATGAGTTCACTCATATTTCTTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026464-exon-sc0000572-1491911889:147463..148807 | TCONS_00026464-exon-sc0000572-1491911889:147463..148807 | Clytia hemisphaerica | exon |
| TCONS_00026464-exon-sc0000572-1510915933:147463..148807 | TCONS_00026464-exon-sc0000572-1510915933:147463..148807 | Clytia hemisphaerica | exon |
| TCONS_00026464-exon-sc0000572-1575043694:147463..148807 | TCONS_00026464-exon-sc0000572-1575043694:147463..148807 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000572 | supercontig | sc0000572:147463..148807 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010285 | DNA_helicase_pif1-like |
| IPR027417 | P-loop_NTPase |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0000723 | telomere maintenance |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003678 | DNA helicase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| biological_process |
GO:0000723 |
telomere maintenance |
| molecular_function |
GO:0003678 |
DNA helicase activity |
Blast
The following BLAST results are available for this feature:
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