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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026462 ID=TCONS_00026462|Name=TCONS_00026462|organism=Clytia hemisphaerica|type=transcript|length=918bp
gcaaaaaaaaaattatttcaatctCCCTCTAAAAAACAACATCTTGAAGT
TGCAAGATCAACAGTCGAATTCTCCGTCAAAAACTTGTCCGATGTGATTA
CCAAAATGTCACCAAGAAAAGGGTCGTCCCACAACACCAAGTGGTTTCAA
TTTGCTGCTATAAACAAGGAAGGCTTCAAACGTGGGGTTTCCTTCTTTCC
CTCACTCCATCAAAAACTTGCCGAatctaacaacaacaacaaaatagcTG
TAAAGTTTATAAATGTTATCGAAGAGAACAATGAATACAAACTTGATGCA
GAAACACGACTTGTGGAAACCATTCCTTTACAAAATCCGTACACAATTaa
acatgaaaaaatcaaaCCTATCAATGACTTAATTTTTGCATTAGACATTG
GTTCACTGACATCAATCAAAGGACAGGTTGTCAACACAGACATTAAGAGA
AATATCAACTCAACGCTTTACTTTTATCATTTACGCGATAATACTAACAC
AATACAGTTAGTATCATATAAGCAATTGGATTTGGAAAAAGGCAAGTCTT
ATTCTATTTTTAATGTACATCTTTCTAGCTTTGGTCAAAACAGACAACTT
GATTGCACATTAAACACCTCGATAGAAGTAAACAACAAGTTTGAATTGAA
ACAAAATCAGGAAAGTGAAAGttccaatttaaaaaaatcaaaaccctcAC
TGTAGTGGATGAACGTAATTGTTTGTCATGCAAAATGCCTATTCCTTCGA
ACCTATTTGATGAAGATGACATATACACATGTCCCAATTCAGATTGCAGC
ATTATGTCATCTGAAACGACGTCACACAAAGGCGTTGTTTGCACTGTGCA
GATTAATGGTAGTGATGTTGTAGAGGAGTTCTTTCTAGATAAAGAGTTGG
TTGATAAAAATGGTGGGC Run BLAST on NCBI protein sequence of TCONS_00026462-protein >TCONS_00026462-protein ID=TCONS_00026462-protein|Name=TCONS_00026462-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
AKKKLFQSPSKKQHLEVARSTVEFSVKNLSDVITKMSPRKGSSHNTKWFQ
FAAINKEGFKRGVSFFPSLHQKLAESNNNNKIAVKFINVIEENNEYKLDA
ETRLVETIPLQNPYTIKHEKIKPINDLIFALDIGSLTSIKGQVVNTDIKR
NINSTLYFYHLRDNTNTIQLVSYKQLDLEKGKSYSIFNVHLSSFGQNRQL
DCTLNTSIEVNNKFELKQNQESESSNLKKSKPSL Run BLAST on NCBI transcript from alignment at sc0000572:141215..142132 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026462 ID=TCONS_00026462|Name=TCONS_00026462|organism=Clytia hemisphaerica|type=transcript|length=918bp|location=Sequence derived from alignment at sc0000572:141215..142132 (Clytia hemisphaerica)
GCCCACCATTTTTATCAACCAACTCTTTATCTAGAAAGAACTCCTCTACA
ACATCACTACCATTAATCTGCACAGTGCAAACAACGCCTTTGTGTGACGT
CGTTTCAGATGACATAATGCTGCAATCTGAATTGGGACATGTGTATATGT
CATCTTCATCAAATAGGTTCGAAGGAATAGGCATTTTGCATGACAAACAA
TTACGTTCATCCACTACAGTgagggttttgatttttttaaattggaaCTT
TCACTTTCCTGATTTTGTTTCAATTCAAACTTGTTGTTTACTTCTATCGA
GGTGTTTAATGTGCAATCAAGTTGTCTGTTTTGACCAAAGCTAGAAAGAT
GTACATTAAAAATAGAATAAGACTTGCCTTTTTCCAAATCCAATTGCTTA
TATGATACTAACTGTATTGTGTTAGTATTATCGCGTAAATGATAAAAGTA
AAGCGTTGAGTTGATATTTCTCTTAATGTCTGTGTTGACAACCTGTCCTT
TGATTGATGTCAGTGAACCAATGTCTAATGCAAAAATTAAGTCATTGATA
GGtttgattttttcatgtttAATTGTGTACGGATTTTGTAAAGGAATGGT
TTCCACAAGTCGTGTTTCTGCATCAAGTTTGTATTCATTGTTCTCTTCGA
TAACATTTATAAACTTTACAgctattttgttgttgttgttagatTCGGCA
AGTTTTTGATGGAGTGAGGGAAAGAAGGAAACCCCACGTTTGAAGCCTTC
CTTGTTTATAGCAGCAAATTGAAACCACTTGGTGTTGTGGGACGACCCTT
TTCTTGGTGACATTTTGGTAATCACATCGGACAAGTTTTTGACGGAGAAT
TCGACTGTTGATCTTGCAACTTCAAGATGTTGTTTTTTAGAGGGagattg
aaataattttttttttgc Coding sequence (CDS) from alignment at sc0000572:141215..142132 >TCONS_00026462 ID=TCONS_00026462|Name=TCONS_00026462|organism=Clytia hemisphaerica|type=CDS|length=705bp|location=Sequence derived from alignment at sc0000572:141215..142132 (Clytia hemisphaerica)
CTACAGTgagggttttgatttttttaaattggaaCTTTCACTTTCCTGAT
TTTGTTTCAATTCAAACTTGTTGTTTACTTCTATCGAGGTGTTTAATGTG
CAATCAAGTTGTCTGTTTTGACCAAAGCTAGAAAGATGTACATTAAAAAT
AGAATAAGACTTGCCTTTTTCCAAATCCAATTGCTTATATGATACTAACT
GTATTGTGTTAGTATTATCGCGTAAATGATAAAAGTAAAGCGTTGAGTTG
ATATTTCTCTTAATGTCTGTGTTGACAACCTGTCCTTTGATTGATGTCAG
TGAACCAATGTCTAATGCAAAAATTAAGTCATTGATAGGtttgatttttt
catgtttAATTGTGTACGGATTTTGTAAAGGAATGGTTTCCACAAGTCGT
GTTTCTGCATCAAGTTTGTATTCATTGTTCTCTTCGATAACATTTATAAA
CTTTACAgctattttgttgttgttgttagatTCGGCAAGTTTTTGATGGA
GTGAGGGAAAGAAGGAAACCCCACGTTTGAAGCCTTCCTTGTTTATAGCA
GCAAATTGAAACCACTTGGTGTTGTGGGACGACCCTTTTCTTGGTGACAT
TTTGGTAATCACATCGGACAAGTTTTTGACGGAGAATTCGACTGTTGATC
TTGCAACTTCAAGATGTTGTTTTTTAGAGGGagattgaaataattttttt
tttgc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026462-exon-sc0000572-1491911889:141215..142132 | TCONS_00026462-exon-sc0000572-1491911889:141215..142132 | Clytia hemisphaerica | exon |
| TCONS_00026462-exon-sc0000572-1510915933:141215..142132 | TCONS_00026462-exon-sc0000572-1510915933:141215..142132 | Clytia hemisphaerica | exon |
| TCONS_00026462-exon-sc0000572-1575043694:141215..142132 | TCONS_00026462-exon-sc0000572-1575043694:141215..142132 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000572 | supercontig | sc0000572:141215..142132 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012340 | NA-bd_OB-fold |
Blast
The following BLAST results are available for this feature:
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