TCONS_00026460 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026460
Unique NameTCONS_00026460
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length497

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026460 ID=TCONS_00026460|Name=TCONS_00026460|organism=Clytia hemisphaerica|type=transcript|length=497bp
CAATGCAAATGAACAGCATGTCTCCTAAGGGAACAAGTCAGAATATTTGG
CATGAAATTTAGCATCTTTTATTGAAAAGGTTATCAAGTGGTCATTTGCT
TGCACACATAGTAGACTATTTGGAGTCTTTCTTTTGGAGGGGATTGTTGG
TATAGGTGGAACACAATCTTTTACACTAAGTTGCCGGTTTAATTTATTGT
TCGAACAGAATCTTTGATGTGAACTAGTGGAGTAGgaaaacatgtaagaa
acatttttaaggctcaaaaggccgatttcttaagaaatattgaggctgct
tggtaaaactagtttcttaaaaagaaacgtgtattgCATTGTAAAGTTGC
AAATGTATCCAAGAAATTTATATACCGCCTGACATAGAAGCTTCATTTTG
GTTGGAactaaatttggatttttataaaacCGCAAAATCTGTTAAACTTT
CTTGTTAAAATTGATAGCTCCagggtgggaatttaatttgatgaATG
Run BLAST on NCBI

transcript from alignment at sc0000572:137775..138271

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026460 ID=TCONS_00026460|Name=TCONS_00026460|organism=Clytia hemisphaerica|type=transcript|length=497bp|location=Sequence derived from alignment at sc0000572:137775..138271 (Clytia hemisphaerica)
CATtcatcaaattaaattcccaccctGGAGCTATCAATTTTAACAAGAAA
GTTTAACAGATTTTGCGgttttataaaaatccaaatttagtTCCAACCAA
AATGAAGCTTCTATGTCAGGCGGTATATAAATTTCTTGGATACATTTGCA
ACTTTACAATGcaatacacgtttctttttaagaaactagttttaccaagc
agcctcaatatttcttaagaaatcggccttttgagccttaaaaatgtttc
ttacatgttttcCTACTCCACTAGTTCACATCAAAGATTCTGTTCGAACA
ATAAATTAAACCGGCAACTTAGTGTAAAAGATTGTGTTCCACCTATACCA
ACAATCCCCTCCAAAAGAAAGACTCCAAATAGTCTACTATGTGTGCAAGC
AAATGACCACTTGATAACCTTTTCAATAAAAGATGCTAAATTTCATGCCA
AATATTCTGACTTGTTCCCTTAGGAGACATGCTGTTCATTTGCATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014866XLOC_014866Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026460-exon-sc0000572-1491911889:137775..138271TCONS_00026460-exon-sc0000572-1491911889:137775..138271Clytia hemisphaericaexon
TCONS_00026460-exon-sc0000572-1510915933:137775..138271TCONS_00026460-exon-sc0000572-1510915933:137775..138271Clytia hemisphaericaexon
TCONS_00026460-exon-sc0000572-1575043694:137775..138271TCONS_00026460-exon-sc0000572-1575043694:137775..138271Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000572supercontigsc0000572:137775..138271 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.123482	0.240506	0.139613	0.410155	0.996744	1.18146	1.58701	1.33687	0.934263	0.900153	0.249734	0.410208	0.245783	0	0.702054	1.50133	0.832281	0.758277	0.5238	0.548119	0.717034	0	0	0.386301	0.132399	0.118084	0.509544	0.185451	0.136866	0.559931
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026460 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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