TCONS_00026446 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026446
Unique NameTCONS_00026446
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026446 ID=TCONS_00026446|Name=TCONS_00026446|organism=Clytia hemisphaerica|type=transcript|length=370bp
TTAAAACTGTAAATATAACAAAAGACATTATTTAGAACATATATTCATGT
ACTTTAGGATATTTTTAGGCTTcatacaaattttattttatgttctgTCA
GTATTTTTATGCCCATAGTGAGTGGGATCGGGGTGGGCTTTCTCTCAGTA
GTAAAAAAGGTCACCACTATAGGCATAATAATTCTGATCAGATTTACACA
GCTTATAGTCAATGTATATACATAGTTTCTTTATTTActagtttattttt
gttttgatagtatTTTAGTCACACTTTTGTCTTTATTTTACTCTTATAAG
CaccactttttaaaaaattccaaagtcGTGGACTTCCTCCTTCAAAAACT
GGCTCCCACGTTTTTTCAag
Run BLAST on NCBI

transcript from alignment at sc0000572:35036..35405

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026446 ID=TCONS_00026446|Name=TCONS_00026446|organism=Clytia hemisphaerica|type=transcript|length=370bp|location=Sequence derived from alignment at sc0000572:35036..35405 (Clytia hemisphaerica)
ctTGAAAAAACGTGGGAGCCAGTTTTTGAAGGAGGAAGTCCACgactttg
gaattttttaaaaagtggtGCTTATAAGAGTAAAATAAAGACAAAAGTGT
GACTAAAatactatcaaaacaaaaataaactagTAAATAAAGAAACTATG
TATATACATTGACTATAAGCTGTGTAAATCTGATCAGAATTATTATGCCT
ATAGTGGTGACCTTTTTTACTACTGAGAGAAAGCCCACCCCGATCCCACT
CACTATGGGCATAAAAATACTGAcagaacataaaataaaatttgtatgAA
GCCTAAAAATATCCTAAAGTACATGAATATATGTTCTAAATAATGTCTTT
TGTTATATTTACAGTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014852XLOC_014852Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026446-exon-sc0000572-1491911889:35036..35405TCONS_00026446-exon-sc0000572-1491911889:35036..35405Clytia hemisphaericaexon
TCONS_00026446-exon-sc0000572-1510915933:35036..35405TCONS_00026446-exon-sc0000572-1510915933:35036..35405Clytia hemisphaericaexon
TCONS_00026446-exon-sc0000572-1575043694:35036..35405TCONS_00026446-exon-sc0000572-1575043694:35036..35405Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000572supercontigsc0000572:35036..35405 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.10179	0.644653	0.499003	0.732294	0.594332	1.17412	0.849917	2.65227	2.04261	2.3001	1.11626	2.10786	2.34486	1.67417	0.875888	0.537121	1.65422	1.66205	0.702738	0.735365	2.71166	2.57081	1.76861	2.52674	1.65613	1.47805	2.41724	1.93481	0	0.747568
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026446 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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