TCONS_00026444 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026444
Unique NameTCONS_00026444
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length224

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026444 ID=TCONS_00026444|Name=TCONS_00026444|organism=Clytia hemisphaerica|type=transcript|length=224bp
AAGAAAGATAAGGAGAATATCAAAAAGCTCAGGCAGAGCTACCCTCTACC
TGAAAACTGCAACATACCAGTGCCTAAACTAAACATTGAGTTATGGCAAT
TACTCAACAGTTTTCAACGAAAAAGTGATGTATCCATGGCTATGATCCAA
AGAAATCTAATTTCTGCCCTCTCTGGGGCCGAGGCCGGGGGAGGATGTCC
TCCTCCACAAACACCAACACAAAA
Run BLAST on NCBI

transcript from alignment at sc0000572:46515..47088-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026444 ID=TCONS_00026444|Name=TCONS_00026444|organism=Clytia hemisphaerica|type=transcript|length=574bp|location=Sequence derived from alignment at sc0000572:46515..47088- (Clytia hemisphaerica)
AAGAAAGATAAGGAGAATATCAAAAAGCTCAGGCAGAGCTACCCTCTACC
TGAAAACTGCAACATACCAGTGCCTAAACTAAACATTGAGTTATGGCAAT
TACTCAACAGTTTTCAACGAAAAAGTGATGTATCCATGGCTATGATCCAA
AGAAATCTAATTTCTGCCCTCTCTGGGGTAATAAAAATTATTGAAAATGT
ACTCAATGAAGACGCAAACAAGAAAGAGCTTGTTCAAATATCTTCGGATA
TAGCAGGCCTCATTGGTCAAGCATTCAAAGACATTGCCTTTAAGAGGAAA
CTTTTTATAAAATCAGCCCTTAAAAATGAATTTAAAGACTTGGTATCCAC
ATATAACTGAAAAACTTTTTGGGGAAAACCTGAGCCAAAATATTAAAGAT
TTGAAATTAAGAAACAAACTGAAAAACAATAACAAAACATCAAGCTATAA
ACAGAAAAGCCAGTTCTCAAAGCGAAACAGTGAATATAATCCTTACAACA
AAAACACTCGTCCAAATTCTTTTTTAGGCCGAGGCCGGGGGAGGATGTCC
TCCTCCACAAACACCAACACAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014850XLOC_014850Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026444-exon-sc0000572-1575043694:46912..47088TCONS_00026444-exon-sc0000572-1575043694:46912..47088Clytia hemisphaericaexon
TCONS_00026444-exon-sc0000572-1575043694:46515..46561TCONS_00026444-exon-sc0000572-1575043694:46515..46561Clytia hemisphaericaexon
TCONS_00026444-exon-sc0000572-1510915933:46912..47088TCONS_00026444-exon-sc0000572-1510915933:46912..47088Clytia hemisphaericaexon
TCONS_00026444-exon-sc0000572-1510915933:46515..46561TCONS_00026444-exon-sc0000572-1510915933:46515..46561Clytia hemisphaericaexon
TCONS_00026444-exon-sc0000572-1491911889:46912..47088TCONS_00026444-exon-sc0000572-1491911889:46912..47088Clytia hemisphaericaexon
TCONS_00026444-exon-sc0000572-1491911889:46515..46561TCONS_00026444-exon-sc0000572-1491911889:46515..46561Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000572supercontigsc0000572:46515..47088 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.762669	0	0	0	0	0.0337087	0	0	0.979144	0	4.7088	0.773845	0.772769	0	2.63915	0.986346	0	2.68212	0	6.34571	2.08409	0.476277	0.314661	0	0	0	0	0	1.59087	1.25446
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026444 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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