TCONS_00026443 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026443
Unique NameTCONS_00026443
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length462

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026443 ID=TCONS_00026443|Name=TCONS_00026443|organism=Clytia hemisphaerica|type=transcript|length=462bp
AGGCAGAACATaaagAAAACATTGGTCCAAAAACTGATAACTCCAAGCAA
ACACCAAAGAAAAACACACCATTGAAGTCCGcAGATTCCTTTGATTCGCC
AGGCATGAAAAGACCGTCAACCAGTTCAGGAAAGACTCCTACGAAATTAT
TTCGTCCCAAGAAATCACTCCCCGCAAGTGATACAATATCAGATACAAAA
GATGTAGTCGGCTATGTTGGATGTGTGACTCCAATAAAGGTGAATCAATC
AAACACACGAGAATACTTCACCGTCCATATCAAGACATCAAAAGTTGATT
TTTGTCGAGTTATGGTGTCAAATCACCGACAACTAAGAAGAGTTCGTCAA
GATTTTGTAAACCGATTCCATAATCATGAGGCAGTTacattaaaaaaact
gaaaccTGGGGCTGATATATTATTCTTTAACAATTACTCAGAAGTGTTGG
TCTATGATGAAG
Run BLAST on NCBI

protein sequence of TCONS_00026443-protein

>TCONS_00026443-protein ID=TCONS_00026443-protein|Name=TCONS_00026443-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
AEHKENIGPKTDNSKQTPKKNTPLKSADSFDSPGMKRPSTSSGKTPTKLF
RPKKSLPASDTISDTKDVVGYVGCVTPIKVNQSNTREYFTVHIKTSKVDF
CRVMVSNHRQLRRVRQDFVNRFHNHEAVTLKKLKPGADILFFNNYSEVLV
YDE
Run BLAST on NCBI

transcript from alignment at sc0000572:127604..128865+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026443 ID=TCONS_00026443|Name=TCONS_00026443|organism=Clytia hemisphaerica|type=transcript|length=1262bp|location=Sequence derived from alignment at sc0000572:127604..128865+ (Clytia hemisphaerica)
AGGCAGAACATaaaggtaattttttcttaCGTTTGATTGTGCTTTTACTT
ATTTTCTTTCAGGGTACTTTTAAGTAACTTAGGCCAAGAAGGCTTCCAGT
AAGGTACCTTTTTTAAGACCTCAGATCTAAAAAAAACACTGGCTGAGTCT
CAAAGattgaaagtttttaaagactcaaaaaatatagaaaaggCTGTCAA
GAACTGGCTAGAATATCTGACACGAGTCAACATAATGTGTGAAttttaat
acaaatttattttttctctagAAAACATTGGTCCAAAAACTGATAACTCC
AAGCAAACACCAAAGAAAAACACACCATTGAAGTCCGGTAAGGATTATTG
TTTTGCTTGAAACTTACAATTATTCAAATTTCTGTTGGAATTTATAAATT
CAGCAGAAATTACAGAAGCATTTAAGATTTatctcttgatttttttgtct
gttcgtttttgttttttacacACAATTTTGAGTGAAGATGTGAAATGACA
TCCTATTATCAGTAAAATCAATTCTCTTAAAGGTGTGATTATGAAGAGAA
CTCAGATTTAGTGAAAAATAACTTTACTGGAATTATAAATTTAATCttaa
gaaattttctttcagcAGATTCCTTTGATTCGCCAGGCATGAAAAGACCG
TCAACCAGTTCAGGAAAGACTCCTACGAAATTATTTCGTCCCAAGAAATC
ACTCCCCGCAAGTGATACAATATCAGATACAAAAGGTTTGTTTAGTCTAT
ATGATTTTCTATTTGTGTTCTAAACAAAGGTTCTGTTTTTATGCAGTAAA
CGATTTTGTGTCCACAAGCTTTGGAGTGAGGAATAATTTTATATCAGCGT
TACTAAGATTTTGATTTATTGTTAATGTAATTTAAGTTGATGGATTAGAA
GTCTGTGCTGCACAGAAATTACAATTAACATCAAATTCGAACATCTTAGA
CTGGTTTTGTCTTTTTCATCTTGCATGTGTAGAATTCTCTTATCTCTTTA
GATGTAGTCGGCTATGTTGGATGTGTGACTCCAATAAAGGTGAATCAATC
AAACACACGAGAATACTTCACCGTCCATATCAAGACATCAAAAGTTGATT
TTTGTCGAGTTATGGTGTCAAATCACCGACAACTAAGAAGAGTTCGTCAA
GATTTTGTAAACCGATTCCATAATCATGAGGCAGTTacattaaaaaaact
gaaaccTGGGGCTGATATATTATTCTTTAACAATTACTCAGAAGTGTTGG
TCTATGATGAAG

Coding sequence (CDS) from alignment at sc0000572:127604..128865+

>TCONS_00026443 ID=TCONS_00026443|Name=TCONS_00026443|organism=Clytia hemisphaerica|type=CDS|length=1836bp|location=Sequence derived from alignment at sc0000572:127604..128865+ (Clytia hemisphaerica)
GCAGAACATaaagAAAACATTGGTCCAAAAACTGATAACTCCAAGCAAAC
ACCAAAGAAAAACACACCATTGAAGTCCGcAGATTCCTTTGATTCGCCAG
GCATGAAAAGACCGTCAACCAGTTCAGGAAAGACTCCTACGAAATTATTT
CGTCCCAAGAAATCACTCCCCGCAAGTGATACAATATCAGATACAAAAGA
TGTAGTCGGCTATGTTGGATGTGTGACTCCAATAAAGGTGAATCAATCAA
ACACACGAGAATACTTCACCGTCCATATCAAGACATCAAAAGTTGATTTT
TGTCGAGTTATGGTGTCAAATCACCGACAACTAAGAAGAGTTCGTCAAGA
TTTTGTAAACCGATTCCATAATCATGAGGCAGTTacattaaaaaaactga
aaccTGGGGCTGATATATTATTCTTTAACAATTACTCAGAAGTGTTGGTC
TATGATGAAGCAGAACATaaagAAAACATTGGTCCAAAAACTGATAACTC
CAAGCAAACACCAAAGAAAAACACACCATTGAAGTCCGcAGATTCCTTTG
ATTCGCCAGGCATGAAAAGACCGTCAACCAGTTCAGGAAAGACTCCTACG
AAATTATTTCGTCCCAAGAAATCACTCCCCGCAAGTGATACAATATCAGA
TACAAAAGATGTAGTCGGCTATGTTGGATGTGTGACTCCAATAAAGGTGA
ATCAATCAAACACACGAGAATACTTCACCGTCCATATCAAGACATCAAAA
GTTGATTTTTGTCGAGTTATGGTGTCAAATCACCGACAACTAAGAAGAGT
TCGTCAAGATTTTGTAAACCGATTCCATAATCATGAGGCAGTTacattaa
aaaaactgaaaccTGGGGCTGATATATTATTCTTTAACAATTACTCAGAA
GTGTTGGTCTATGATGAAGCAGAACATaaagAAAACATTGGTCCAAAAAC
TGATAACTCCAAGCAAACACCAAAGAAAAACACACCATTGAAGTCCGcAG
ATTCCTTTGATTCGCCAGGCATGAAAAGACCGTCAACCAGTTCAGGAAAG
ACTCCTACGAAATTATTTCGTCCCAAGAAATCACTCCCCGCAAGTGATAC
AATATCAGATACAAAAGATGTAGTCGGCTATGTTGGATGTGTGACTCCAA
TAAAGGTGAATCAATCAAACACACGAGAATACTTCACCGTCCATATCAAG
ACATCAAAAGTTGATTTTTGTCGAGTTATGGTGTCAAATCACCGACAACT
AAGAAGAGTTCGTCAAGATTTTGTAAACCGATTCCATAATCATGAGGCAG
TTacattaaaaaaactgaaaccTGGGGCTGATATATTATTCTTTAACAAT
TACTCAGAAGTGTTGGTCTATGATGAAGCAGAACATaaagAAAACATTGG
TCCAAAAACTGATAACTCCAAGCAAACACCAAAGAAAAACACACCATTGA
AGTCCGcAGATTCCTTTGATTCGCCAGGCATGAAAAGACCGTCAACCAGT
TCAGGAAAGACTCCTACGAAATTATTTCGTCCCAAGAAATCACTCCCCGC
AAGTGATACAATATCAGATACAAAAGATGTAGTCGGCTATGTTGGATGTG
TGACTCCAATAAAGGTGAATCAATCAAACACACGAGAATACTTCACCGTC
CATATCAAGACATCAAAAGTTGATTTTTGTCGAGTTATGGTGTCAAATCA
CCGACAACTAAGAAGAGTTCGTCAAGATTTTGTAAACCGATTCCATAATC
ATGAGGCAGTTacattaaaaaaactgaaaccTGGGGCTGATATATTATTC
TTTAACAATTACTCAGAAGTGTTGGTCTATGATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014849XLOC_014849Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026443-exon-sc0000572-1491911889:127604..127618TCONS_00026443-exon-sc0000572-1491911889:127604..127618Clytia hemisphaericaexon
TCONS_00026443-exon-sc0000572-1510915933:127604..127618TCONS_00026443-exon-sc0000572-1510915933:127604..127618Clytia hemisphaericaexon
TCONS_00026443-exon-sc0000572-1575043694:127604..127618TCONS_00026443-exon-sc0000572-1575043694:127604..127618Clytia hemisphaericaexon
TCONS_00026443-exon-sc0000572-1491911889:127875..127940TCONS_00026443-exon-sc0000572-1491911889:127875..127940Clytia hemisphaericaexon
TCONS_00026443-exon-sc0000572-1510915933:127875..127940TCONS_00026443-exon-sc0000572-1510915933:127875..127940Clytia hemisphaericaexon
TCONS_00026443-exon-sc0000572-1575043694:127875..127940TCONS_00026443-exon-sc0000572-1575043694:127875..127940Clytia hemisphaericaexon
TCONS_00026443-exon-sc0000572-1491911889:128219..128338TCONS_00026443-exon-sc0000572-1491911889:128219..128338Clytia hemisphaericaexon
TCONS_00026443-exon-sc0000572-1510915933:128219..128338TCONS_00026443-exon-sc0000572-1510915933:128219..128338Clytia hemisphaericaexon
TCONS_00026443-exon-sc0000572-1575043694:128219..128338TCONS_00026443-exon-sc0000572-1575043694:128219..128338Clytia hemisphaericaexon
TCONS_00026443-exon-sc0000572-1491911889:128605..128865TCONS_00026443-exon-sc0000572-1491911889:128605..128865Clytia hemisphaericaexon
TCONS_00026443-exon-sc0000572-1510915933:128605..128865TCONS_00026443-exon-sc0000572-1510915933:128605..128865Clytia hemisphaericaexon
TCONS_00026443-exon-sc0000572-1575043694:128605..128865TCONS_00026443-exon-sc0000572-1575043694:128605..128865Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026443-proteinTCONS_00026443-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000572supercontigsc0000572:127604..128865 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.155335	0	0	0	0.168781	0.236335	0	0	0.0933912	0	0	0.0796262	0	0	0.107897	0	0	0	0	0	0	0	0	0.192281	0.205207	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026443 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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