TCONS_00026440 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026440
Unique NameTCONS_00026440
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length598

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026440 ID=TCONS_00026440|Name=TCONS_00026440|organism=Clytia hemisphaerica|type=transcript|length=598bp
AGAGAATTCATTCGTCTCCAAGACTGACGAAGATTTCGGTCCAATCGTTG
TTCACGTCATTCATTTTGTCCCAACATATTTGCTTGCTCTTTCGAAAGAA
GGCTGACACATGATCATTCCCAGTGAAAGCATGGAAACCGATCAAAGCAT
TCTGCTGCTCTGGTGTTAAAGTGATTGAGTCTAGCCAGACCTTCTTTCTC
CCATCACCGTTCCCTGTATCTATCAAAACACGAGAATTTCCACCCAGGAA
ACCAACAGCAATCACAAGGATATCTGTAACTCCTGATGGAGAACGAATGC
AGACATTTCCTTCGCATTCCAGGGCGTCCATTGCATGTAGAACGACTTTG
GTATCTGCTTCTTCTTGGTTAGATACAAGGTTTTCCACATTCAACACGTT
TTCAATCGTTACTTTTTCACAATATTTATTTTCAGACATAGTGATGGCGT
TGCAGTTTAATATGCCCAGGCATTTCTTTGCGTTGGCTTTGATGAACTCG
AATGTGAGCTTGATAAGTTGTGTTTTGTTCTCACCATTCGAGTAGAATCC
ATTCAAGTCACTCGGTATCAATGTGTTGAAAGACTTGATCAAGATTCT
Run BLAST on NCBI

protein sequence of TCONS_00026440-protein

>TCONS_00026440-protein ID=TCONS_00026440-protein|Name=TCONS_00026440-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
RILIKSFNTLIPSDLNGFYSNGENKTQLIKLTFEFIKANAKKCLGILNCN
AITMSENKYCEKVTIENVLNVENLVSNQEEADTKVVLHAMDALECEGNVC
IRSPSGVTDILVIAVGFLGGNSRVLIDTGNGDGRKKVWLDSITLTPEQQN
ALIGFHAFTGNDHVSAFFRKSKQICWDKMNDVNNDWTEIFVSLGDE
Run BLAST on NCBI

transcript from alignment at sc0000571:200458..201055

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026440 ID=TCONS_00026440|Name=TCONS_00026440|organism=Clytia hemisphaerica|type=transcript|length=598bp|location=Sequence derived from alignment at sc0000571:200458..201055 (Clytia hemisphaerica)
AGAATCTTGATCAAGTCTTTCAACACATTGATACCGAGTGACTTGAATGG
ATTCTACTCGAATGGTGAGAACAAAACACAACTTATCAAGCTCACATTCG
AGTTCATCAAAGCCAACGCAAAGAAATGCCTGGGCATATTAAACTGCAAC
GCCATCACTATGTCTGAAAATAAATATTGTGAAAAAGTAACGATTGAAAA
CGTGTTGAATGTGGAAAACCTTGTATCTAACCAAGAAGAAGCAGATACCA
AAGTCGTTCTACATGCAATGGACGCCCTGGAATGCGAAGGAAATGTCTGC
ATTCGTTCTCCATCAGGAGTTACAGATATCCTTGTGATTGCTGTTGGTTT
CCTGGGTGGAAATTCTCGTGTTTTGATAGATACAGGGAACGGTGATGGGA
GAAAGAAGGTCTGGCTAGACTCAATCACTTTAACACCAGAGCAGCAGAAT
GCTTTGATCGGTTTCCATGCTTTCACTGGGAATGATCATGTGTCAGCCTT
CTTTCGAAAGAGCAAGCAAATATGTTGGGACAAAATGAATGACGTGAACA
ACGATTGGACCGAAATCTTCGTCAGTCTTGGAGACGAATGAATTCTCT

Coding sequence (CDS) from alignment at sc0000571:200458..201055

>TCONS_00026440 ID=TCONS_00026440|Name=TCONS_00026440|organism=Clytia hemisphaerica|type=CDS|length=591bp|location=Sequence derived from alignment at sc0000571:200458..201055 (Clytia hemisphaerica)
AGAATCTTGATCAAGTCTTTCAACACATTGATACCGAGTGACTTGAATGG
ATTCTACTCGAATGGTGAGAACAAAACACAACTTATCAAGCTCACATTCG
AGTTCATCAAAGCCAACGCAAAGAAATGCCTGGGCATATTAAACTGCAAC
GCCATCACTATGTCTGAAAATAAATATTGTGAAAAAGTAACGATTGAAAA
CGTGTTGAATGTGGAAAACCTTGTATCTAACCAAGAAGAAGCAGATACCA
AAGTCGTTCTACATGCAATGGACGCCCTGGAATGCGAAGGAAATGTCTGC
ATTCGTTCTCCATCAGGAGTTACAGATATCCTTGTGATTGCTGTTGGTTT
CCTGGGTGGAAATTCTCGTGTTTTGATAGATACAGGGAACGGTGATGGGA
GAAAGAAGGTCTGGCTAGACTCAATCACTTTAACACCAGAGCAGCAGAAT
GCTTTGATCGGTTTCCATGCTTTCACTGGGAATGATCATGTGTCAGCCTT
CTTTCGAAAGAGCAAGCAAATATGTTGGGACAAAATGAATGACGTGAACA
ACGATTGGACCGAAATCTTCGTCAGTCTTGGAGACGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014846XLOC_014846Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026440-exon-sc0000571-1491911889:200458..201055TCONS_00026440-exon-sc0000571-1491911889:200458..201055Clytia hemisphaericaexon
TCONS_00026440-exon-sc0000571-1510915933:200458..201055TCONS_00026440-exon-sc0000571-1510915933:200458..201055Clytia hemisphaericaexon
TCONS_00026440-exon-sc0000571-1575043694:200458..201055TCONS_00026440-exon-sc0000571-1575043694:200458..201055Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026440-proteinTCONS_00026440-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000571supercontigsc0000571:200458..201055 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.729619	0.355747	0.826112	0.303083	3.93573	3.20726	2.81412	2.74432	1.30653	1.52315	0.739202	2.30813	1.5164	1.38582	0.932179	1.27825	1.7801	1.26315	0.969502	2.53628	1.23452	1.29033	0.627425	1.33098	2.74176	1.48565	1.00045	0.934247	0.708593	0.928214
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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