TCONS_00026433 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00026433
Unique Name	TCONS_00026433
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1158

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000571:114860..121573-

transcript sequence

>TCONS_00026433 ID=TCONS_00026433|Name=TCONS_00026433|organism=Clytia hemisphaerica|type=transcript|length=1158bp
TTTTTTTCTAGTGATTAAAACACAAAACTTGATGAACAGACGATAAATGA
GTACTATTGTGGCGGGATGAAGAATAAATGatgtaaaacattttttcttg
cAATAAGAACAATAGTTTGAGTCAAtatgtcaaattcaaaaagttcattA
TCACGAACACCAAGCACTGTGTCAAGTGTTGAATATGGCAATGACCAAGA
AAATTGCTACCCAAGCGATGTGGAGCTTGGACCCATCATTACAGCTTTAA
AGCTAGGCACATCTATGAGTCGTTTCAAAGTGAAAGGCAATAGGCCAGAA
CAAAAGACTTTTCAATTGGATTTGGaagaattcaaaatatcatGGTTTCG
TGCAGGGACAGGAAGAGAAGAAGGGAAAATTTTCATTGAAGAAATCAAGG
AAATAAGAAGTGGTGTGACATCAAAAgattttgttaactttttgcgTAAA
ATTGAAGACCCCAATAGCTGTATTGTCATTGTATATGGAAGCTGCttcaa
tttgaaaacattatcaTGCATGGcTCAAAATGTGAGTGAGCGCAATTATT
GGATGAAGGGTcttgtttatttgaaatttcgCAATCAATATGTACCGACT
GTTGCACTCACCCAAAGGTGGCTTTGTAGAGAGTGGTCTGGCCTGCCCAA
AAACAATCAGCAAAAAATGTCAATGAGGGAgtataaaatgtttttgcaAA
GAGCAAACATCAAACTAAGTAACAACAAAGTACGAGACACATATCAGAAA
GTTCTTACCCCTCGAAGTAGTGGGATAGATGCAACAGGTTTCTGCCAAGC
TTATTACAATTTACTGCATCAGTCGTCTATTGCTGAGAAGTATGAACAAT
ACTTTCGAAAAGTCAACGACGAGCTGGTCATGTTTATGTCtgattttcaa
agattcttaaCAGATGTACAAGGGGACTATCGGGCACAGCATGACCCTCA
ATATGCGCGATCAATCATGGTTCAGTGTATCCCAGATGAAAGTCTATTCA
AAGGTTCTGAACCGTACGTTGATATGAAACAGttCATCAATTACCTGTTC
AGCCCCATGAACAGTGCTTTCAATAACAACACAGCTTACGACGAAAGCAA
TAAAGTTTATCAAGATATGACCAAACCACTAAATAACTATTGGATTGCGT
CTTCCCAC

Run BLAST on NCBI

transcript from alignment at sc0000571:114860..121573-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00026433 ID=TCONS_00026433|Name=TCONS_00026433|organism=Clytia hemisphaerica|type=transcript|length=6714bp|location=Sequence derived from alignment at sc0000571:114860..121573- (Clytia hemisphaerica)
TTTTTTTCTAGTGATTAAAACACAAAACTTGATGAACAGACGATAAATGA
GTACTATTGTGGCGGGATGAAGAATAAATGATGTAAAACATTTTTTCTTG
CAATAAGAACAATAGTTTGAGTCAATATGTCAAATTCAAAAAGTTCATTA
TCACGAACACCAAGCACTGTGTCAAGTGTTGAATATGGCAATGACCAAGA
AAATTGCTACCCAAGCGATGTGGAGCTTGGACCCATCATTACAGCTTTAA
AGCTAGGCACATCTATGAGTCGTTTCAAAGTGAAAGGCAATAGGCCAGAA
CAAAAGACTTTTCAATTGGATTTGGAAGAATTCAAAATATCATGGTTTCG
TGCAGGGACAGGAAGAGAAGAAGGGAAAAGTAAGCTTTCTGCTATCATGT
ATTAAGTTCTTCATTTTAAGACTATTATTGAAAATTCACAAAAAAATCTG
AAAGATTCAAAAAATCATAAACAGCATTTATTTTAGTACCAATTCAGCAC
AGATTTCTCAAATTTAAATGTCTTTTTATTTACTACTTTTTTGATATTCA
GTACACAATGAAGATTTTTGAAATTCTTTTTAGCGTACCGCTATTTCACT
TTGAAATTTCCCCTCTGTTTTTAGATGAATTAATTTTGCAAAGTTTCATA
AAAAATTAGCTTGCTTTAATTTTGTAGTTTTCATTGAAGAAATCAAGGAA
ATAAGAAGTGGTGTGACATCAAAAGATTTTGTTAACTTTTTGCGTAAAAT
TGAAGACCCCAATAGCTGTATTGTCATTGTATATGGAAGCTGCTTCAATT
TGAAAACATTATCATGCATGGGTAAGAAGTTTCAAACTCAATTTCTGACT
TTTTGATAATTATTAAATACTAGAGATTTTCACTTTGAAGTTTTATTTGG
TATATAGTGAGTGGAATTTCTTATTTTCTGTTCTAATTTAAAATTTTTAT
AGCTCAAAATGTGAGTGAGCGCAATTATTGGATGAAGGGTCTTGTTTATT
TGAAATTTCGCAATCAATATGTACCGACTGTTGCACTCACCCAAAGGTAA
GTTGCAACTTATTTTTTGTTTTTTTTTCTAAGTAAAAATAAGTTTACAAC
CACAGTTGAGGGCCCCTTTTTAGCTCTCTTCATGATGGTAGGAGAGGGAG
ATCATTTTTCTTGATTGCTCCACTTACCCTTGATCTTTCTCTTAATTGCT
GAGCATGAAGCAGAGCTAAGTAAAAAGTCTTTGGCTTGACTCGGCTGGGG
ATTGAACCAATGATTGAACCTAAGGTCTTGCCTGCCCTTGAGCACCATAA
CCATAACATTCAAACTACTACTGCTGCTACTTGTAAATATAATAAAGCAT
ATGGTAATCAGTTCTGTGAATTCAGAACTGAATATCAACCTTGAGTTGAC
CCAAAATAGATGAGGTCAACTTGAATTCTTGTTTTCTGCAATTATGTTTA
TAAAAAGAGGGTTTATTATTGTCAAACCTTTCAAAGAAATGAGACATGAG
TGAAAATTAAAACCTATTTTTCATTATTATGATTTTACTTTTGAACAGCT
TGATTTTTATGAAACGATTCATGATTTGTTTTTTCAAATTGATTTGAAAA
GATCTCAGATGGGCCATACCATATGCTTGTTTTTAAATCCAAAAAATCTA
AGCAGATTTTTTTCTCTTAGAAAGAAAAAATATCAGTCATTAAATGGAAC
CAGCACTTTACTTTTTCTCTGTTTTCTTTTTAAGATATTTGACATTAGAA
AAATGCTTCAAAAGTTCACCCTTCTCCTCATTATTTAAATAAGTACCAAA
ATATGATTTCTAATAATGTCTATAAAGATAATTAATTCTTATTAGGAAAT
AATGATTTGTCAGAATTGCTTCTTTTATACAATGTTATTTTAATTTTTGC
AATACTTTTTTTTGTAAGCATAACGTTATAAGTATACTTAGGCTCAAACT
TGGTGAAAAATATGCATAAGCATACCTCCAAGCTGAAATGCAAAAAAATT
ACTAACCTACTTTTAAAGCTGCTTTAGCCTTCTTTGAGAATTTTGCTAAG
AATACTGAGCCTCGACCTATTTTCCTGTATGCTTATAAAAAAAGAATGTA
TTCTAATCAGTATAAGTATCAGTACAGCAAATTTCAATCTTAGACACCCA
CCCACCCCTATAGTACAAAATACTATCCAGCAAACTACACAATACACCCC
AACAACCCCTGTATAGTAAAAAGTACCATACAGAAAACTCTCAAATATAC
CCTAACACCCCCTGTATAGTAACAACAAATTTACATCAAAAGAAACACCC
CCAACAATATGTTGAACGGTGAAGAAGAATGCGGTTATTATATTTTGATT
TTCCCCGACATGTTTCGGACTCTGTCCTTTCTCAAGGGGATGATATTTCT
ATAGAAATAATTACTATACAAAATTATTTGACGTTAATTTGGACAAATAG
GTCACTTTAGGCAGTTTAGGCTTGAAAATAGGTTGGTGTAAATGGGGCCA
TCTGATGAGTTGATTTTGGTCTAAAATGAACGTGTAGATCAGACTTAGGT
GCTCAGTTGGAGAAGATTGAGTTCTTGGTTCAATCCATTAGGTGTGAGGA
TTCTCAGTTCTTTGATCCAGAAGTTTTCTCTCTGTAGTATTATCCTTTTC
ATTTTTTCAATATCTGTCTCGTTGTCAGGTATATTACACAGATATTGCTA
ATTAAAAACAATTAAAATTAGAGAATGTTTACTAGAGAATAAATCAAATT
CAGGACATGAGAACGTAATTAATCAAAATTCCAATAGAAAAAGAAGGCTA
AAAGAGGCTATAATAGGAGGCAAGACGATATTTTTGTACACAGACCCCCC
CTCCTGTTCTAATTCCAATTATCTGTGTTAGGAATTCATCTATGTGATGA
GAAAACCTGGTTCTTCCTTCCACACTTTTGAATTTATTCAAAAGATATGT
TAAAACTCTTTTATATGGAAATGTTATTACACACAATCTTTTTCAAGTCA
ATTTTGTAAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNACATCAAAAGAAACACCCCCAACAATATGTTGAACGGTGAA
GAAGAATGCGGTTATTATATTTTGATTTTCCCCGACATGTTTCGGACTCT
GTCCTTTCTCAAGGGGATGATATTTCTATAGAAATAATTACTATACAAAA
TTATTTGACGTTAATTTGGACAAATAGGTCACTTTAGGCAGTTTAGGCTT
GAAAATAGGTTGGTGTAAATGGGGCCATCTGATGAGTTGATTTTGGTCTA
AAATGAACGTGTAGATCAGACTTAGGTGCTCAGTTGGAGAAGATTGAGTT
CTTGGTTCAATCCATTAGGTGTGAGGATTCTCAGTTCTTTGATCCAGAAG
TTTTCTCTCTGTAGTATTATCCTTTTCATTTTTTCAATATCTGTCTCGTT
GTCAGGTATATTACACAGATCTTGCTAATTAAAAACAATTAAAATTAGAG
AATGTTTACTAGAGAATAAATCAAATTCAGGACATGAGAACGTAATTAAT
CAAAATTCCAATAGAAAAAGAAGGCTAAAAGAGGCTATAATAGGAGGCAA
GACGATATTTTTGTACACAGACCCCCCCTCCTGTTCTAATTCCAATTATC
TGTGTTAGGAATTCATCTATGTGATGAGAAAACCTGGTTCTTCCTTCCAC
ACTTTTGAATTTATTCAAAAGATATGTTAAAACTCTTTTATATGGAAATG
TTATTACACACAATCTTTTTAAAGTCAATTTTGTAAATTCTACAGGTGGC
TTTGTAGAGAGTGGTCTGGCCTGCCCAAAAACAATCAGCAAAAGTAAGAA
AGTTTATTTCTTCTTATTACTTTAAGCTTGTTAAAAATTTGATGTTAAAG
CTTTTAAAAAGGATATGAGTTGCTTCTAGAGTGAAGCAGGCTTGTCAATA
AATCCTACTTCGAAAGATGTTGCAAATAAAAGTCATAGTCAGACAATATT
GGGGCTCTTTAATGTCAGTAAACATTTTAAAAGTTGTTATTTAATTGACA
TTTTTAAAGTTTTGTTTCAAATATTTTGCGGATGACACCTTTCCAAATTT
CCGTTGGGACTTAATTTCGCAGATGAAACCCAAATCCGCAAAATCTGTTT
GAATTAATCTATCATTAAATTAAGTTTTTCTCACAAATAATTACATACTG
TTTTCTCAACCCAGAATGTCAATGAGGGAGTATAAAATGTTTTTGCAAAG
AGCAAACATCAAACTAAGTAACAACAAAGTACGAGACACATATCAGGTAA
GAGATACTAAAACACTTTTAACTTTGTAAACCTTTTTAAAGTTCAATCTT
TATCTTCATTATAAAAATGCACTTGTATGACAAAATGTTACCTACATTTC
AACTTCTTTCAACAGTTTTTCCAGATTGAACAAATTGAATTGCCTATATT
TTTGTAAAAAAGGGCAACAGTTTCTTCTATTAAGGCAAGGATTTCATTTG
TATCCAGACTGACCTTCAGAAGCCTTCCAGAAGCTTAATATTTGTTATCA
TACGTTAGCAAATGCAATAACGAGGAACTTATTTTCCTTTTCACTTTAGA
AAGTTCTTACCCCTCGAAGTAGTGGGATAGATGCAACAGGTTTCTGCCAA
GCTTATTACAATTTACTGCATCAGTCGTCTGTAAGTGAAAAAAGTTTCAT
TAGAATTTATGCTATCTAACCAAAGTTTTATTGAAGTTAGAGCCTATATC
TTTTACAATTCCCATTGGATCACTCATCATCATTTTGATCATATTATTAA
CCATGGAATTTCAGTTTTAACTCAAGTTTAAGGTTTTGTTTTAAACAAGA
GTGATGCTTACTCATCAACTTTGATTTACAAGCTTTTTTATATTGAATTG
ACAAGGGTCTGGAGCAAGATTGGTCAGAAAGAGAAAAATAAAAACCTTTT
TTTGCTCGTATCAGCACAATATAACAATAGGAGACACTGTCCTGATATGA
AATGTGTCTGATATGTATGAAATGACGAACACCTATGTAAAACTAAAACC
TTTAAGCAATATTGGGCTCTAGATAAGTTGAAAACCTGGGTATACATTTA
TCTATTTTGAATTTTGTATTCCTAGATTGCTGAGAAGTATGAACAATACT
TTCGAAAAGTCAACGACGAGTGAGTAATTCTTCTACATGTTCATTTCTTG
GAGTTTGAAAGCATGCTGTTAGATTCTGGCAGATTATTTATGTGGTTGAA
CTTCACTTTAACTAGTGAATTGATTAATTGAGTAATTCCCAAAATTCCCA
AAATGTGGATGAGCCCTGATTTTTGAAAATCAAATTCAGATCCAGCAATA
TCCTGGAAAATAAATTTCTGTAAAATAGATTTTTTTCGGGACTGTAGAAT
ACACAAAACTTAACATTGTTGAATGTTTTCTGTTGATTACAGGCAGGCCT
TTAAAAGTATCACTTGTTTTTTCTAGGCTGGTCATGTTTATGTCTGATTT
TCAAAGATTCTTAACAGATGTACAAGGGGTAATTTTTTCATGTGTTTTCA
CTCCATTGATATTTACAACGGTTCTTAAACTGTTTCCAATTATATTTTAA
TTTACAAATTCTCATGAAAATTTTCCAGTTTATTGGCAATTTTGATACAG
CTACTGTATCAAACCTTGCGCTAAAAGCTATGTGAAAATGATTACAGGCT
TAGAGCTTGCCTTAAACCAGATAATAAGGAATTATTGAAAAATATAATTT
GTGATTTAAACTTTTAAACCTAATCTCGGCGTGAGCAGGGCTTGAAATAA
GGATTGAACATCATCCATCCCAAAAATCAATTTATAATTTTTTTAAACCT
ACTTGAAATCGTTATATCAAGCCATAGTGAAGGGTTACTAAGTATTAAGG
TACTAAGGGTTGACAGATTTTATTTTCCTCATTAGGACTATCGGGCACAG
CATGACCCTCAATATGCGCGATCAATCATGGTTCAGTGTATCCCAGATGA
AAGTCTATTCAAAGGTTCTGAACCGTACGTTGATATGAAACAGGTAATAA
CAAGAACTGTTTTAAAGTTTACAAATTACTGGTTAAATATGCAACAACCA
ATTCGGAGTAAATTTTGAACTGGTATTTTTGTCAATTCAAACTAGACGTA
GAGAAGAGGGAGTTGCGGTCAAAAGTATGAAAAATTACTTTCAGAAAGTG
CTTAAAAAGGTTTAAAAACCTTTATCACATAATTACAATGTATAGCAATG
TGCCCTCCCGGTTATTACCATAATGGCTTTATGGCAACTCCTGAACTGTG
GCACAGGATGTACGGTTACACATTTTGTGGATTGCATTGTGGAGTCACAA
GAGTGCTCAAACTGCGAGCAGCGAGCAATGCATAGTTATAAATAACTATA
ACAAATCTATAGGTTTTTCATTTTTTCTTTATTTTCAGTTCATCAATTAC
CTGTTCAGCCCCATGAACAGTGCTTTCAATAACAACACAGCTTACGACGA
AAGCAATAAAGTTTATCAAGATATGACCAAACCACTAAATAACTATTGGA
TTGCGTCTTCCCAC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_014840	XLOC_014840	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000571	supercontig	sc0000571:114860..121573 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0346851	0.0371995	5.21704e-08	2.28663e-07	0	0	0	0	0	0	3.03241	0	0	0	0	0	5.55568e-06	0	3.97572	0	0	2.50802e-09	4.45775	0.000217143	0	0	0.00015524	0	0.191768	3.59341

Blast

[Close]

BLAST of TCONS_00026433 vs. Swiss-Prot (Human)
Match: PLCG1 (1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 OS=Homo sapiens GN=PLCG1 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.112e-33
Identity = 117/332 (35.24%), Postives = 175/332 (52.71%), Query Frame = 1

Query:  211 PSDVELGPIITALKLGTSMSRF-KVKGNRPEQKTFQLDLEEFKISWFRAGTXXXXXXXXXXXXXXXXSGVTSKDFVNFLRKIEDP------NSCIVIVYGSCFNLKTLSCMAQNVSERNYWMKGLVYLKFRNQYVPTVALTQRWLCREWSGLPKNNQQKMSMREYKMFLQRANIKLSNNKVRDTYQKVLTPRSSGIDATGFCQAYYNLLHQSSIAEKYEQYFRKVND-------ELV-MFMSDFQRFLTDVQGDYRAQHDPQYARSIMVQCIPDESLFKGSEPYVDMKQFINYLFSPMNSAFNNNTAYDESNKVYQD-MTKPLNNYWIASSH 1158
            PSD E+  +  +L++GT M+ F   K  RPE+KTFQ+ LE  +I+W R G  + EG I I EIKEIR G TS+DF    R  EDP      + C VI+YG  F LKTLS  A +  E N W+KGL +L       PT    +RWL +++  + +N + ++S ++ K  L + N ++ N +        L  RS  I    F Q Y +L++  S  +  +  F + +        EL  + + +FQ+FL D QG+  A  D    +  M+  + D  L +  EPY  + +F+ +LFS  NS +N+       + V  D M  PL++YWI+SSH
Sbjct:   17 PSDAEVLHLCRSLEVGTVMTLFYSKKSQRPERKTFQVKLETRQITWSR-GADKIEGAIDIREIKEIRPGKTSRDFD---RYQEDPAFRPDQSHCFVILYGMEFRLKTLSLQATSEDEVNMWIKGLTWLMEDTLQAPTPLQIERWLRKQFYSVDRNREDRISAKDLKNMLSQVNYRVPNMRFLRERLTDLEQRSGDITYGQFAQLYRSLMY--SAQKTMDLPFLEASTLRAGERPELCRVSLPEFQQFLLDYQGELWAV-DRLQVQEFMLSFLRD-PLREIEEPYFFLDEFVTFLFSKENSVWNSQL-----DAVCPDTMNNPLSHYWISSSH 335

The following BLAST results are available for this feature:

BLAST of TCONS_00026433 vs. Swiss-Prot (Human)

BLAST of TCONS_00026433 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PLCG1	1.112e-33	35.24	1-phosphatidylinositol 4,5-bisphosphate phosphodie...	[more]

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TCONS_00026433 (transcript) - C. hemisphaerica