TCONS_00026430 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026430
Unique NameTCONS_00026430
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length476

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026430 ID=TCONS_00026430|Name=TCONS_00026430|organism=Clytia hemisphaerica|type=transcript|length=476bp
CGAATGGGATGCCGGTCTATAGAATtgGATCTATGGGATGGACAGACAGA
CCCAATCATTTATCACGGCTTAACGCTGACCTCAAAAATTAAACTGGTAG
ACGTCGTACAAGTTATTGCAAGTAATGCCTTCGAAGTCACTCCGTATCCA
CTTATTCTTTCACTGGAAAACCATTGCACCATACcacaacaaatcaaaat
ggctaacatgttcaaaaaatatttcggaaAATCTTTGGTAACGCAGTATT
TAGATGCCAACGAGAAACAACTGCCGTCACCAGAATCACTCAAATACAAA
GTCATATTGAAGTACAAGAAGATTGACCAAGGACAAAGTGATGTGTTCCT
GTCTTCGTTAAACTCTAGAGATTCAGcCATTTGGGACGACACGTTATTAT
CATCATCCCTTAAAACTGGCCTCGTTTACATGGAGGATGAAGAGAAGaAA
TGGAACAAACATTTGTTTGTGTTGAC
Run BLAST on NCBI

transcript from alignment at sc0000571:104700..111133-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026430 ID=TCONS_00026430|Name=TCONS_00026430|organism=Clytia hemisphaerica|type=transcript|length=6434bp|location=Sequence derived from alignment at sc0000571:104700..111133- (Clytia hemisphaerica)
CGAATGGGATGCCGGTCTATAGAATGTATGTTAATAATTACTGTGGTTTA
TTACGAAATTTGGGCTGTGCAGGGGTGGTGTTAAGGATATCGATTCTTGA
AAATTAACCCGTTCAGTACCAACATTTTGAACGATTTTTGTTATACAGAA
CAGACAGGGATGGTGTTAAGGAGACGTCCATTCTTGAAAACTTAACTTTT
TCAGTACCAACGTTTTGAACGCTTCTTGAAAAAGAATCACAAAATTTACT
AAAACTTTATGCTCTTCCAAATGATAGCTGCAATATTTCTAGGAACCTAG
TTAACATTCTGGATGTTTACCCTTGGATATTCAATATTAACCCATTTATG
TAACTTTCTCGACTTAAGATTCCATAGGTTTCAGCTTCTCCATAGTCATA
ATGTCCTTCTCGACTGGAAATCCCCTCACACTTTTCCTTCACCCACAGTA
TTTTACCCTAGAAATTCCTAATAAGTAAGTTTGCGACCGCAGCTGTCTAC
CCGAAGTTAGGGGAGGGCGCCACTCCTTTCCCTGGATTTCTCCACTTACC
CTTGATCCTTTGCTTTGATTGCTGAGCATCAAGCAGAGAGGCATCAAGTA
CCATTTTGGAAATCTTTGGTATGACCCGGCTGGGGATCGAACCCACAACC
TTTCGCACCGTAGCTGGATGCTCTACCTTCATGTTACGGTCGCTAATCCT
TACACAATAAATCAATGAAATCAAGACCCACAAATTAGCCAATCGCGTAG
ATTATTCTTTATCAAAGTCGTTTACTCTACTGTTCAAACAAATAACCGCC
AGTTTCTTTATTTTTAGTGGATCTATGGGATGGACAGACAGACCCAATCA
TTTATCACGGCTTAACGCTGACCTCAAAAATTAAACTGGTAGACGTCGTA
CAAGTTATTGCAAGTAATGCCTTCGAAGTCACTCCGTAAGTTGCTCTTTC
TTGCATACTATATTTAGCAGGAACTTGGATTACCAAGAAAAAGTAAAGTT
TTACGAATCTATATCCCTTTATGTCTACTCCCATCTTTTTTCAAAATCTA
CCTAACCTTAAAGAGAACCGTGATCATTTCAGTGTTCTCCACAAAGACAA
TTTTGTATGATGCTGGTAAAATTATATGCCAATAATAATTTCCCATACCT
TATGGCGGTGCTTTTTAAATTCTCAAGATATATGCTTGCGGCTTTATGTT
TAGTTCTATGCCTTCAATTTTAGTAACGATTTTTTTATTACTATAGGTAT
CCACTTATTCTTTCACTGGAAAACCATTGCACCATACCACAACAAATCAA
AATGGCTAACATGTTCAAAAAATATTTCGGAAGTATGTTTTTCTTTCAGT
TAAGATTATGATAAATGAAATTGGATGAAAACTAACTTGTCACACATTAT
GACGTCCGTATACGGAAATCTCCAAGCCTTGACATAAGTATTTCAATCTG
TTTGTAACCAATTTTATAGGTTGGAAGAAAGTCAAGAGGTTTTTTAACAA
AGCATGAAAGAATGAAACAAGACAACAGCGTTGTAAGGCATATAGATTTA
GATTTTGTAGACAGAATGACTTTCAAATCCCTTAACTGATAGATATTTTA
AGACTTTCAGTAGACTTAAATATGTATGGATGAGACATCAGACATCAGGT
TAAATCTGACTTGGTTAGCTTAAAATATTTTTCATGAATATTCTAGTATT
TGAATTAGAGTAGCTTATCGATAATTGACACAGCTTACTTTTCATATCAC
ACATCCGATAAGATGGATAAAAAAGTCGGGCAAATTTTTTTTTCTTTTTT
CCGATAATCAGTCCACAGTCCTACCGAAATCGACTGAGGAACTCTTTCGT
CCGGGGGAAACTTTTCTTACTCGCCTTTAATTTTTTTTCACTTCACGTGA
CTTTTTCCTACTTTAAAATTTTACTTTAAACAAAACAAGTTTCGGACAAG
GAAAACTGTTAATTTTGACTTGTTGCTTTTAGAATCTTTGGTAACGCAGT
ATTTAGATGCCAACGAGAAACAACTGCCGTCACCAGAATCACTCAAATAC
AAAGTCATATTGAAGGTAATATTATGGTCTTTTAGAAGAAGGAAGTGGGC
GGATATTTGGTTTTTCTCGGAGGCAAAAGGCCTAGGTCGAGTAAAATAGC
AAGCCGTCTTCCCGCCAAGAAGCGACGAAACTATATTTTTCATAGTCTCT
TCCAAAATAAAGTACAATAGTATAAAATCTGAAAAAATGGCTTATCGTCT
CTTGTAACATTTCCAAAATTGTCAAACAAAGAAGGCATCGCCAAAGAGGG
CGCCGTCAATTTTGAGCGCCCTAAAACACCCTAGTTGTATTTCATTTCCC
TAGGGTTTTTCGCTCATTCTTGATTAAAGTTGTTTTTTGCAGAACCAAAC
TTTGCGCTAGACACCAGAAACTCAGCAATTAGTAACCGCATACTCAGACT
CGAATATTACAAAAACTTGAATGTCAATATTAATCCATGGGTGCAACTTT
CTTGAGGTTTTTTTTCCATAGGTTCTCATCGTCATAATGCCCTTCTCGAC
TGGAAAGTCCCCTCCTGATGGTTCTTTCCATCAACAGTATTTTACTCTTA
AAGTCTGTCTCAAAATAATTTGCAGTTGAGACAAAAAATGCCTGCAACTT
TTGATAGAATTTGAATGAAGTTGCGATTTTGTGCTCGTTGAAAAGATATT
TGTGAGTGTAATATTATCAAGCAAAAACATTTGAAAATTCAAGAAAAATG
AAAATGAAAAATAAAGAAGAAAAAAATCAAGCTCTTGTAGAAATGTGATA
TAGTTGCCATTTTCACAGGAATGGTTTTTTCAATCTTAGATCATCATCAA
TGTGAAAAGATTTTTCAAAAATATTCATTCGAACAAAAGATATCAAACAA
ATAAGTTTGTTATTGGTTGATTGACAAAAGGCTGTTATTTGGTCGTTTTT
CACTACTTTATAGAGTAGTAGAGCAATAATTTTTGCTTGATATCTTTTGA
TTGAATGAATATTTTTGAAAACCAGTCGTTTTCACTTTCTTTTTCAAGCA
AAATGCAACGCGCCTTTGATTTTTTCGGCTTAACAACCAGGTCAGATCGT
TACATTCACCATATCCTTTTACAGCAGAGTGTGCTACGCAGAACGGATGA
TCTGTTACGAGATTACGGTGATTTAGACCAAAATGTCTCTTCCTTTTTTT
GAGTTTCTCGACTCTAATTTTCAAAATTGTTATCATCAAAAGCTGTTAGA
CCCACTTCCTTATTACCCCTCTCAGAAAAAACTGCATTTTCTTCTGTAAA
AGTTCACGCAGGTTCATTCAGAGATTATAAAACAGCCCTGGTGGTATAAT
TTCATGGGGTACATATTAGAAATTGACTACGCATAATTTATATGTTAATT
ATACGTTATAAAAGCGTGCTGCAATTTATATTGTAAAAAAGAAAAAACAT
TTTAAAAGCTTCTTTGAATGCAATATATTTGGAAAGAAATTCGATAAGTG
GGTCCTTAATTCATCTTTAATTTGACAATTTCTTGCAACCAAAATCCCCT
TCTTTTAAGATCTTCAATTTTTGCAATTTACCTCAAATGACTCTTTATAT
GGCTACTCCTACTCTTGTGGTCTAGAATATAATTACCTCACTTTTTTACT
AGCTTGGAAATAATTATAATGAAGCTAGTTTATATATAACTTATGTAACT
TTTTGGCATCTCATGTTACTGCTATTATATGAGCGAGCGGATTTAAATGA
ATATGGGGTTGAATGTCTTCAATTATTATTCACAAGCATGTTTTTAAGGC
CGGTCTCCGCTTTCGCGCGACATGAGCGAAAATTTTTTGACGTTTTTGTA
AGGTCGTTGGTCGGTTGAATTGGTAGAAATTGACGTAACGGATGAAAAAA
GTAGAACTTCCTTCAACTTTTTTTTTGTTCGCGCGAAACTTTTTTATAAC
GTAATCTTTTCTTTAGGCAAAAAACTGTCGCCCATTTCGCGCGAAAGTGG
AGTCCGGCCTTTAGAACTTATTTTAATTGTTACTTACAGTACAAGAAGAT
TGACCAAGGACAAAGTGATGTGTTCCTGTCTTCGTTAAACTCTAGAGATT
CAGGTACCTATATTTGACTTTCTTTCTAATGGACATACCCCGAAGAAAAC
TCCGGAAATTTTTCCTCTCTTACGTTTAGCAAACAAAAAAAAAATTGGTT
TGCGGGGAGTCACTAGCCAGTACCTTCCCACAAACCAAATTTTTTATCTG
TTTAATGGAGTGCAGCTTATCCAAAACCACGGAAAAATGAGCTGCGCCGA
AGAGAAAATCTTGGACAGACTTTCCCGTCCAAAAACATTCGATTCCGCGG
CAAAAAGTAAAGCTGGGAGCAAACCATCAAACATGGTTCTTCAAACATTT
GAACTTTCTTGTTGAATGGTTTGCGCGGCATTTTCCAACATTCTTTCTTT
TTTTTCTCTTTTTAAATCACGCGTTCGAAATCATATTCAATGTTCGATTA
GCAATGCAATGTCTTCCTTCTAGGGAAACCCCGAGTTGAATTATTGTTTC
AAACATATTTTTTGATTTTTTGGTTGTAAAGATACTATTTTTGATTCCGC
AAACCTCCAAACATCGATTTCAAACATGAAACGTCACGATGTTTGAAGAA
CAATGTTTGATGGTTTGCTCCCAGTTTAACAGACGTTAAAATGCGATAAA
AAAGCAGTTTTCGTCTAACAGGCTAGGGAGTCACGTGGTACTCTAACACT
TCCTCAGACACTACGCAGCAGGAGGGGGGATTTTCGGATTTTTGGCTGCT
TTCGTTCCGATTGGAAAATCAAGAACTAAATCACTGTCTTTGTACAAGAC
TGAATAAAACAAAATTCCGTCCAAAGGTCTCCGTCGAAAATATGTATATA
GGATGTAGTACTTAGTGCTGGTTAGTCCTAAAAGGCGAAATGCCTACACC
TGCTATGCGAGATTTTAGCTCGAACGGGGTACAAAAAAAACTGGGAGGCA
TGGGTCGTTGTGCTCCTAGGTCTGACCAACACGGGCAAAATTCTCTAAGA
AGTGGCTGAAGTGATTTTTGCCAGAAAACCTATTGACCTTTATTTAGATA
CGCGTTTTCGTTTTGTGGAAAATTCTCTTTTCTTGTCGATAGGGAAATGC
CTACGCCTACACCTACACCTGCTCTGCCAACCAAATCTTCGGGGTGAAGT
TGCCCAGATTCTTTCAAGAATTTCTTCACGTATGATATTTTTTGGTGATC
GCATGGAGAGGGAATCCAGATATCATGATTTTGGATTTCACATTTGGATT
TCACAATAAATTAATAAAATAACTAATGTAATATTACTATTAATCAACTA
ATATTATTAATTTATTTATTTATTCAGCCATTTGGGACGACACGTTATTA
TCATCATCCCTTAAAACTGGCCTCGTTTACATGGAGGATGAAGAGAAGGT
TTGACTTTGTTGTTTTTCTTTTTAAATCTCTCTTGATCGGCTGTTGTTTC
TATTGAACAAGTCAATTCTTTTGTATATTGTTGATATCAGGAGGATTTTG
CTGTTCATTTTTTTGATTTACACGTTTTTTTTAAGAAACTAGCTTTACCA
AGCAGCCTCAATGTTTTTTTTAAGAAATCGGCCTTTTGAGCCTTAAATGT
TTGTTACATGTTTCTAAACTTTTTGACATAATCAGCCTATTTTTCATGCA
AAGAAAAACATTTTGATTGGAAGGTTCTTAAAAAAACCGAATTAAAAAAT
GTTTTTTTCTCGTTCTCAGCCTCAGTATGTTTCTTAGATGTTTCTTAGTT
TTTAGGCAGTTTTTAGCCTCATGTTTCTTAAAAGTGTGTTTCTTAAAAAA
AAAAACAGCGTTTATTCCATAGACGTAAATAAAAGTAAATTCTGGTTCAG
TTTATTTCATATTGATGTCAATAACCATCCGAGGTTATTTCTGCCTGATT
GTTTCTTTTCTGTCTGCGAAATGCCATCACTCCTTTACTTCAAATTCTCA
AATATTTTTTGATTTCAAATGTACTTACACACCCTAACTAAAAGAATGCC
GAAGTCGACCTAGTTTTTAATTCAAACGCGGGGTACAAAAATAGGGAGGT
ATGGGTGTCAGTGCTCCTAGGTCTAGACCAACCGGTGCAGAACCAAAAAG
TCGTGCTTCCTGTCTAAAAAATGCATACTGTTTTTTTATATGCAAGTATC
TACCCCTATATCAGGCTCGCATTATGCTTAGCAATCTAGAATTAAAACGT
CATGTTAGCATTCTATTGTCCTTAAACAATATTATTGTTAAGGTACGAAA
AACTAAGCCTGAATATACTTGTAAATGTTTTGCTTATAGAAAAAAAACAT
GTACCTATCCCCACAGGTTTGAACCTTTTTTTTTCTTCTTCTTTTTTTTG
CATAGAAATGGAACAAACATTTGTTTGTGTTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014839XLOC_014839Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026430-exon-sc0000571-1575043694:111109..111133TCONS_00026430-exon-sc0000571-1575043694:111109..111133Clytia hemisphaericaexon
TCONS_00026430-exon-sc0000571-1575043694:110199..110316TCONS_00026430-exon-sc0000571-1575043694:110199..110316Clytia hemisphaericaexon
TCONS_00026430-exon-sc0000571-1575043694:109802..109887TCONS_00026430-exon-sc0000571-1575043694:109802..109887Clytia hemisphaericaexon
TCONS_00026430-exon-sc0000571-1575043694:109069..109151TCONS_00026430-exon-sc0000571-1575043694:109069..109151Clytia hemisphaericaexon
TCONS_00026430-exon-sc0000571-1575043694:107031..107094TCONS_00026430-exon-sc0000571-1575043694:107031..107094Clytia hemisphaericaexon
TCONS_00026430-exon-sc0000571-1575043694:105686..105756TCONS_00026430-exon-sc0000571-1575043694:105686..105756Clytia hemisphaericaexon
TCONS_00026430-exon-sc0000571-1575043694:104700..104728TCONS_00026430-exon-sc0000571-1575043694:104700..104728Clytia hemisphaericaexon
TCONS_00026430-exon-sc0000571-1510915933:111109..111133TCONS_00026430-exon-sc0000571-1510915933:111109..111133Clytia hemisphaericaexon
TCONS_00026430-exon-sc0000571-1510915933:110199..110316TCONS_00026430-exon-sc0000571-1510915933:110199..110316Clytia hemisphaericaexon
TCONS_00026430-exon-sc0000571-1510915933:109802..109887TCONS_00026430-exon-sc0000571-1510915933:109802..109887Clytia hemisphaericaexon
TCONS_00026430-exon-sc0000571-1510915933:109069..109151TCONS_00026430-exon-sc0000571-1510915933:109069..109151Clytia hemisphaericaexon
TCONS_00026430-exon-sc0000571-1510915933:107031..107094TCONS_00026430-exon-sc0000571-1510915933:107031..107094Clytia hemisphaericaexon
TCONS_00026430-exon-sc0000571-1510915933:105686..105756TCONS_00026430-exon-sc0000571-1510915933:105686..105756Clytia hemisphaericaexon
TCONS_00026430-exon-sc0000571-1510915933:104700..104728TCONS_00026430-exon-sc0000571-1510915933:104700..104728Clytia hemisphaericaexon
TCONS_00026430-exon-sc0000571-1491911889:111109..111133TCONS_00026430-exon-sc0000571-1491911889:111109..111133Clytia hemisphaericaexon
TCONS_00026430-exon-sc0000571-1491911889:110199..110316TCONS_00026430-exon-sc0000571-1491911889:110199..110316Clytia hemisphaericaexon
TCONS_00026430-exon-sc0000571-1491911889:109802..109887TCONS_00026430-exon-sc0000571-1491911889:109802..109887Clytia hemisphaericaexon
TCONS_00026430-exon-sc0000571-1491911889:109069..109151TCONS_00026430-exon-sc0000571-1491911889:109069..109151Clytia hemisphaericaexon
TCONS_00026430-exon-sc0000571-1491911889:107031..107094TCONS_00026430-exon-sc0000571-1491911889:107031..107094Clytia hemisphaericaexon
TCONS_00026430-exon-sc0000571-1491911889:105686..105756TCONS_00026430-exon-sc0000571-1491911889:105686..105756Clytia hemisphaericaexon
TCONS_00026430-exon-sc0000571-1491911889:104700..104728TCONS_00026430-exon-sc0000571-1491911889:104700..104728Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000571supercontigsc0000571:104700..111133 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.25791	1.74641	1.42596	0.832055	2.75055	1.78289	3.43943	2.49107	4.04622	4.85605	3.19346	3.28292	5.19688	3.29112	2.04577	2.84608	4.35709	6.69205	0.249847	5.38616	3.62943	5.22957	1.62049	3.02347	1.18774	0.134142	5.00704	4.43061	1.80392	2.88349
Blast
[Close]
BLAST of TCONS_00026430 vs. Swiss-Prot (Human)
Match: PLCG1 (1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1 OS=Homo sapiens GN=PLCG1 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.756e-32
Identity = 71/160 (44.38%), Postives = 105/160 (65.62%), Query Frame = 1 
Query:    1 RMGCRSIELDLWDGQTD-PIIYHGLTLTSKIKLVDVVQVIASNAFEVTPYPLILSLENHCTIPQQIKMANMFKKYFGKSLVTQYLDANEKQLPSPESXXXXXXXXXXXXDQGQSDVFLSSLNSRDSAIWDDTLLSSSLKTGLVYMEDE-EKKWNKHLFVL 474
            RMGCR IELD WDG    P+IYHG TLT+KIK  DV+  I  +AF  + YP+ILS+E+HC+I QQ  MA  FKK  G +L+T+ ++ +   LPSP  LK K+++K+KK+ +G +   + +     S ++ +  +S+S+K G++Y+ED    +W  H FVL
Sbjct:  358 RMGCRCIELDCWDGPDGMPVIYHGHTLTTKIKFSDVLHTIKEHAFVASEYPVILSIEDHCSIAQQRNMAQYFKKVLGDTLLTKPVEISADGLPSPNQLKRKILIKHKKLAEGSAYEEVPT-----SMMYSENDISNSIKNGILYLEDPVNHEWYPHYFVL 512
The following BLAST results are available for this feature:
BLAST of TCONS_00026430 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLCG14.756e-3244.381-phosphatidylinositol 4,5-bisphosphate phosphodie... [more]
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