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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026389 ID=TCONS_00026389|Name=TCONS_00026389|organism=Clytia hemisphaerica|type=transcript|length=3052bpRun BLAST on NCBI protein sequence of TCONS_00026389-protein >TCONS_00026389-protein ID=TCONS_00026389-protein|Name=TCONS_00026389-protein|organism=Clytia hemisphaerica|type=polypeptide|length=664bp TDKNNFNSMSLFFWLWLTATICYAEAFSQNGTKPVQNAILDKVYDGHVKDRun BLAST on NCBI transcript from alignment at sc0000570:97229..121597- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026389 ID=TCONS_00026389|Name=TCONS_00026389|organism=Clytia hemisphaerica|type=transcript|length=24369bp|location=Sequence derived from alignment at sc0000570:97229..121597- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000570:97229..121597- >TCONS_00026389 ID=TCONS_00026389|Name=TCONS_00026389|organism=Clytia hemisphaerica|type=CDS|length=37905bp|location=Sequence derived from alignment at sc0000570:97229..121597- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00026389 vs. Swiss-Prot (Human)
Match: SIDT1 (SID1 transmembrane family member 1 OS=Homo sapiens GN=SIDT1 PE=2 SV=2) HSP 1 Score: 330.102 bits (845), Expect = 1.316e-97 Identity = 219/641 (34.17%), Postives = 348/641 (54.29%), Query Frame = 3
Query: 108 QNAILDKVYDGHVKDGVEDIYFFNLTETRLKQNGTVRIRVCSPDASPDTPIFFVARLLRGVISWSLPY---NAGEKSYNY--FTQTICRSIGGNDLHQVESF-YLDVSTLNPIGFSYRMIAKSDLDYQLSTGKVHAASTTPAELLFFTYSFLPDDERVLVTATS-TSKTCAVLIVQNVKQCASLTQSTAANTGMHATMTKQAGIVVERGHL--EKIFIVFMVKATDTDCTTRKNSINPFSQANDGDHLNPLKFIPKRTKADCSLYGDGSRNKTIEIEVIRLPKVKDYVEPVLMPLAVYGSFYIVALFVMAAYWCTSETGGKSFYTYL-FPKKVKKXXXXXXXXXXXXXXXXXXXXXXXXXXQPGGSS--SVNSYNAVPQSPNAVNDNEDFDEEDLRSPLADKNEYDFLDDRHHDKDVYRLNLKLTVVDTSRKSYKKLEKKFNIYYWNLMTVGIFYALPVVQLVLTYQRVTNESGDQDICYYNFFCARPYHILSAFNNVYSNIGYMXXXXXXXXXXMRRDRIAYMHHVKNPDKYQ-KYGLPKHYGIFYAMGWALFMEGVMSGCYHVCPNYSNFQFDTAFMYILGILCSLRLYQARHHDIFINGHFAFAGFAFVIFTSVIGVVYRSEG--FFITFCFFHIXSS 1985
+ A D VY G V E+IY FN T ++ Q VR+ V S + + P+ V R + V+SW +P ++SYNY ++T+C S N+ ++ ++DV+++ P+G Y+++ +QL T + +P++ +F Y F D + V++ S + C+V+ VQN+ G++ +MTK+A I +++ E+ F+VF++K D C G FI ++ +L R K +E+ ++ K YV+ L + ++ SFY+ L V F YL F +K D G+ G + P GS+ +++ ++ P + +D + D S + +++++D + D DK++ R + L + D SRK + + KK+ IY+WN++T+ +FYALPV+QLV+TYQ V N +G+QDICYYNF CA P +LSAFNN+ SN+G++LLG LF+ V+RRD I + ++ D + +YG+PKH+G+FYAMG AL MEGV+S CYHVCPNYSNFQFDT+FMY++ LC L+LYQ RH DI + + A+A FA VI +V+GVV+ F++ F H+ +S
Sbjct: 44 RGADFDHVYSGVVNLSTENIYSFNYT-SQPDQVTAVRVYVNSSSENLNYPVLVVVRQQKEVLSWQVPLLFQGLYQRSYNYQEVSRTLCPSEATNETGPLQQLIFVDVASMAPLGAQYKLLVTKLKHFQLRTNVAFHFTASPSQPQYFLYKFPKDVDSVIIKVVSEMAYPCSVVSVQNIMCPVYDLDHNVEFNGVYQSMTKKAAITLQKKDFPGEQFFVVFVIKPEDYAC---------------GGSF----FIQEKENQTWNL----QRKKNLEVTIVPSIKESVYVKSSLFSVFIFLSFYLGCLLV-------------GFVHYLRFQRK-----SIDGSFGSNDGSGNMVASHPIAASTPEGSNYGTIDESSSSPGRQMSSSDGGPPGQSDTDSSV-EESDFDTMPDIESDKNIIRTKMFLYLSDLSRKDRRIVSKKYKIYFWNIITIAVFYALPVIQLVITYQTVVNVTGNQDICYYNFLCAHPLGVLSAFNNILSNLGHVLLGFLFLLIVLRRD-ILHRRALEAKDIFAVEYGIPKHFGLFYAMGIALMMEGVLSACYHVCPNYSNFQFDTSFMYMIAGLCMLKLYQTRHPDINASAYSAYASFAVVIMVTVLGVVFGKNDVWFWVIFSAIHVLAS 640 HSP 2 Score: 190.274 bits (482), Expect = 7.738e-50 Identity = 99/217 (45.62%), Postives = 139/217 (64.06%), Query Frame = 1
Query: 1978 YQARHHDIFINGHFAFAGFAFVIFTSVIGVVYRSEG--FFITFCFFHIMACFYLSLQIYYMGRAKTAL------VLMWHSRGYKICSRPQYPVRFMLLVVFMGINIALSLYGVTNEVKDFATFLLGIIICNGLLYVGFYCIMKLYCGEKIKLFPVIFALASMVTWGIAIKFFVAGLTDWQTTAAQSREGNRKCIIGNFYDDHDLWHFLSACALFFSF 2604
YQ RH DI + + A+A FA VI +V+GVV+ F++ F H++A LS QIYYMGR K L +++++ + CSRP Y R +LLVV +N + +L+G+ +DFA+++LGI ICN LLY+ FY IMKL EK+ P+ +A+ V W A+ FF L+ W+ T A+SRE NR+CI+ +F+DDHD+WHFLSA ALFFSF
Sbjct: 590 YQTRHPDINASAYSAYASFAVVIMVTVLGVVFGKNDVWFWVIFSAIHVLASLALSTQIYYMGRFKIDLGIFRRAAMVFYTDCIQQCSRPLYMDRMVLLVVGNLVNWSFALFGLIYRPRDFASYMLGIFICNLLLYLAFYIIMKLRSSEKVLPVPLFCIVATAVMWAAALYFFFQNLSSWEGTPAESREKNRECILLDFFDDHDIWHFLSATALFFSF 806 The following BLAST results are available for this feature:
BLAST of TCONS_00026389 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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