TCONS_00026384 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026384
Unique NameTCONS_00026384
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length509

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026384 ID=TCONS_00026384|Name=TCONS_00026384|organism=Clytia hemisphaerica|type=transcript|length=509bp
CGCTTTGGTAATATTCCTTTTATCTATTTACAGTCCAAACAAGAAAACAT
AATCTCTTGCGAGTGTAGTTGTCGTCTACAAGCTGAACTTGAGATCTCAC
AACAACGATGTTTCGATCTTCAACAAAGATGCGAATCGATAGATTACGAA
CTGAAACACATGGAACGAAATTTTCATGGCAGTATACAAGAACAGAAAAA
CATGGAGAATCGTCGTTTGTTGGTTGAAGAGAGACTACAGGAGAAGGTTG
AAGAAATGCAGAAGATGAGAAATGATTTCTTCGAAGAAGCAGAATCAAGA
AAGGTAGAATAATTTCTTAGTTTCCAGATTTAGATGGATCTATTTTTGAG
GCTGGTCTCcgcttgcgcgcgctgcgattaTATCTtctggcttcaatcct
ttttgtttggaaaaaaagattacgtcataaaaatgtacagtagcgcgcgc
tcgaaaaaaaagttgaatacatTTCAACTTTCTTTAACCGTTATACGTCA
GATCGTGCA
Run BLAST on NCBI

transcript from alignment at sc0000570:61269..61777-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026384 ID=TCONS_00026384|Name=TCONS_00026384|organism=Clytia hemisphaerica|type=transcript|length=509bp|location=Sequence derived from alignment at sc0000570:61269..61777- (Clytia hemisphaerica)
CGCTTTGGTAATATTCCTTTTATCTATTTACAGTCCAAACAAGAAAACAT
AATCTCTTGCGAGTGTAGTTGTCGTCTACAAGCTGAACTTGAGATCTCAC
AACAACGATGTTTCGATCTTCAACAAAGATGCGAATCGATAGATTACGAA
CTGAAACACATGGAACGAAATTTTCATGGCAGTATACAAGAACAGAAAAA
CATGGAGAATCGTCGTTTGTTGGTTGAAGAGAGACTACAGGAGAAGGTTG
AAGAAATGCAGAAGATGAGAAATGATTTCTTCGAAGAAGCAGAATCAAGA
AAGGTAGAATAATTTCTTAGTTTCCAGATTTAGATGGATCTATTTTTGAG
GCTGGTCTCCGCTTGCGCGCGCTGCGATTATATCTTCTGGCTTCAATCCT
TTTTGTTTGGAAAAAAAGATTACGTCATAAAAATGTACAGTAGCGCGCGC
TCGAAAAAAAAGTTGAATACATTTCAACTTTCTTTAACCGTTATACGTCA
GATCGTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014813XLOC_014813Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026384-exon-sc0000570-1575043694:61269..61777TCONS_00026384-exon-sc0000570-1575043694:61269..61777Clytia hemisphaericaexon
TCONS_00026384-exon-sc0000570-1510915933:61269..61777TCONS_00026384-exon-sc0000570-1510915933:61269..61777Clytia hemisphaericaexon
TCONS_00026384-exon-sc0000570-1491911889:61269..61777TCONS_00026384-exon-sc0000570-1491911889:61269..61777Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000570supercontigsc0000570:61269..61777 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.133899	0.130999	0.234722	0.721527	1.01507	0	0.622109	0.33152	0	0.700052	0.186023	0.293778	0.0869019	0.460816	0.0887767	0.482922	0.327375	0.506719	0.62932	0.166927	0.000606036	0.148781	0.227837	0.218906	0.162157	0.346116	0.204125	0.133732
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026384 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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