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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026380 ID=TCONS_00026380|Name=TCONS_00026380|organism=Clytia hemisphaerica|type=transcript|length=843bp
CGTCGAGTGGTGGAGCCAGGACTGGGTCATCCTCGAAAACGGGTGACGGG
GAAAGCTCGGATGAATCACCTGATATCAGTTCAGTGGATATAGACGAGCT
GCTAAAACGGATCCGTCATCACGTGTTGGTCAATCGAATCCGCGTAGAAG
AATTCTTTCAAGATNATAGACGAGCTGCTAAAACGAATCCGTCATCACGT
GTTGGTTAATCGAATCCGCGTAGAAGAATTCATTCAAGATTTTGATCCAT
TACGTCACGGCTCGATTCCAACCTCCCGTTTCCGGATGGGATTGAGTGCA
ATGGGTCAACAACATTTAACGGAAACCCAAATCTTGGCAATCATTGATCG
ATATGCTGATGACACCAGGAAAGGAAATGTGTGGTGGATTTCTTTTTTCG
CCGATATCGATAAAGTTTTCACTCAACGCGGCCTCGAGAAAACGCCGACT
GCTGTTCTACCTCCAGCCGAAACATACCACATGCCCAAACCCGGTGCAAC
AGACTGGACCACGGTGAACAAAGACAAACAAATGGAACTTGACGACGTTA
TGCAAAAAATGAGATGGAAAACCAACCAACGGCGAATTTTAGCAAAACCC
TGTTTCCAAGATTTTGACAGACACAATATAGGGTACGTGACTCGATCACA
ACTTCATCAATGTTTGACGTACTTGAGTTTAAATGGAACTCCTGCTGAAG
TGGATTTGGTGTATGGTAAATTTAGTGACGACACCGGCTTCAATTATCTG
CGTTTCTTAGAGAAATTACAACCGTCTGAAGTACaagaacaaaaatattt
gaaacgtATTGAAGATTTGAAATTGACCAATAAAGAAAAGGTG Run BLAST on NCBI protein sequence of TCONS_00026380-protein >TCONS_00026380-protein ID=TCONS_00026380-protein|Name=TCONS_00026380-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
MGLSAMGQQHLTETQILAIIDRYADDTRKGNVWWISFFADIDKVFTQRGL
EKTPTAVLPPAETYHMPKPGATDWTTVNKDKQMELDDVMQKMRWKTNQRR
ILAKPCFQDFDRHNIGYVTRSQLHQCLTYLSLNGTPAEVDLVYGKFSDDT
GFNYLRFLEKLQPSEVQEQKYLKRIEDLKLTNKEKV Run BLAST on NCBI transcript from alignment at sc0000570:215779..217574+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026380 ID=TCONS_00026380|Name=TCONS_00026380|organism=Clytia hemisphaerica|type=transcript|length=1796bp|location=Sequence derived from alignment at sc0000570:215779..217574+ (Clytia hemisphaerica)
CGTCGAGTGGTGGAGCCAGGACTGGGTCATCCTCGAAAACGGGTGACGGG
GAAAGCTCGGATGAATCACCTGATATCAGTTCAGTGGATATAGACGAGCT
GCTAAAACGGATCCGTCATCACGTGTTGGTCAATCGAATCCGCGTAGAAG
AATTCTTTCAAGATNATAGACGAGCTGCTAAAACGAATCCGTCATCACGT
GTTGGTTAATCGAATCCGCGTAGAAGAATTCATTCAAGATTTTGATCCAT
TACGTCACGGCTCGATTCCAACCTCCCGTTTCCGGATGGGATTGAGTGCA
ATGGGTCAACAACATTTAACGGAAACCCAAATCTTGGCAATCATTGATCG
ATATGCTGATGACACCAGGAAAGGAAATGTGTGGTGGATTTCTTTTTTCG
CCGATATCGATAAAGGTATGTGGGGTACTGGCTAAAATGTCTTCTTCTTA
TGAAGcgttcaaattttcgcgaacATATACTTTCGATTTTTGCGAATgtc
tttgaaagttttttgaataaatCGCATTTTTCACCTCGCAAATGTTGTTT
CTCGcgaaaatttgcccaaataaaatttcttttgaagattGGCCTCTGCC
AGATTTCAAACATTACCATTTATCATCattgtgtaaaaaaaaaacagaaa
aaataccAAGCTAATCGCAAGAAATGTTCATTTTCCTTAAAATAATGAAA
GAGAAAGggtacgaaaatccgttttttacgGCCTATTTAATTTTACAAAA
TGTTGACTGTTTCAATCTTGACCGTACTGCTCTACCCTCAACTTTTAGTT
TTCACTCAACGCGGCCTCGAGAAAACGCCGACTGCTGTTCTACCTCCAGC
CGAAACATACCACATGCCCAAACCCGGTGCAACAGACTGGACCACGGTGA
ACAAAGACAAACAAATGGAACTTGACGACGTTATGCAAAAAATGAGATGG
AAAACCAACCAACGGCGAATTTTAGCAAAACCCTGTTTCCAAGATTTTGA
CAGGTGGGTTTTTGAACTACAATCAAAAACTGCAATGCAACttgctctat
cccaccaacctgaaacgctttctcgtgtctccaccccattcttctttcta
ccaataaaagtgaaatcgacaacacttaaaataaaatttgtgtgtctttc
acttttgtccctgggacaaaatcaGTGAGTCTTTTGGGTATCTCCGtctc
cctcactttttgtctcatgaaataaaaaagaaaccatggggcACGCACTT
TTTATCTGTGTTGGtgagatggagcatgttgcattgcaccaacgcgaaaa
aaaaacacttccCGTGTCCCCAATCCTTAAGCCAATTTTTCAGAATAAAA
CCTTCTTACTACAGACGAGGCTCCATAACTCGAAGACTCATGAGGAACGC
AGATTTGTTTGAGCATAACTCCAATTTAAGAAGACGTAGTATAAGGCTTT
CTTGCCTGAATGGACccatgttcgagttaaggaggcaTTCGAgatataga
ggttcgagttaacgAGTGTCCCAAGCCTTTAAAACGCAATCATGATCTGA
AGTTCTATTTTTCATTCACATAGACACAATATAGGGTACGTGACTCGATC
ACAACTTCATCAATGTTTGACGTACTTGAGTTTAAATGGAACTCCTGCTG
AAGTGGATTTGGTGTATGGTAAATTTAGTGACGACACCGGCTTCAATTAT
CTGCGTTTCTTAGAGAAATTACAACCGTCTGAAGTACaagaacaaaaata
tttgaaacgtATTGAAGATTTGAAATTGACCAATAAAGAAAAGGTG Coding sequence (CDS) from alignment at sc0000570:215779..217574+ >TCONS_00026380 ID=TCONS_00026380|Name=TCONS_00026380|organism=Clytia hemisphaerica|type=CDS|length=1674bp|location=Sequence derived from alignment at sc0000570:215779..217574+ (Clytia hemisphaerica)
ATGGGATTGAGTGCAATGGGTCAACAACATTTAACGGAAACCCAAATCTT
GGCAATCATTGATCGATATGCTGATGACACCAGGAAAGGAAATGTGTGGT
GGATTTCTTTTTTCGCCGATATCGATAAAGTTTTCACTCAACGCGGCCTC
GAGAAAACGCCGACTGCTGTTCTACCTCCAGCCGAAACATACCACATGCC
CAAACCCGGTGCAACAGACTGGACCACGGTGAACAAAGACAAACAAATGG
AACTTGACGACGTTATGCAAAAAATGAGATGGAAAACCAACCAACGGCGA
ATTTTAGCAAAACCCTGTTTCCAAGATTTTGACAGACACAATATAGGGTA
CGTGACTCGATCACAACTTCATCAATGTTTGACGTACTTGAGTTTAAATG
GAACTCCTGCTGAAGTGGATTTGGTGTATGGTAAATTTAGTGACGACACC
GGCTTCAATTATCTGCGTTTCTTAGAGAAATTACAACCGTCTGAAGTACa
agaacaaaaatatttgaaacgtATTGAAGATTTGAAATTGACCAATAAAG
AAAAGGTGATGGGATTGAGTGCAATGGGTCAACAACATTTAACGGAAACC
CAAATCTTGGCAATCATTGATCGATATGCTGATGACACCAGGAAAGGAAA
TGTGTGGTGGATTTCTTTTTTCGCCGATATCGATAAAGTTTTCACTCAAC
GCGGCCTCGAGAAAACGCCGACTGCTGTTCTACCTCCAGCCGAAACATAC
CACATGCCCAAACCCGGTGCAACAGACTGGACCACGGTGAACAAAGACAA
ACAAATGGAACTTGACGACGTTATGCAAAAAATGAGATGGAAAACCAACC
AACGGCGAATTTTAGCAAAACCCTGTTTCCAAGATTTTGACAGACACAAT
ATAGGGTACGTGACTCGATCACAACTTCATCAATGTTTGACGTACTTGAG
TTTAAATGGAACTCCTGCTGAAGTGGATTTGGTGTATGGTAAATTTAGTG
ACGACACCGGCTTCAATTATCTGCGTTTCTTAGAGAAATTACAACCGTCT
GAAGTACaagaacaaaaatatttgaaacgtATTGAAGATTTGAAATTGAC
CAATAAAGAAAAGGTGATGGGATTGAGTGCAATGGGTCAACAACATTTAA
CGGAAACCCAAATCTTGGCAATCATTGATCGATATGCTGATGACACCAGG
AAAGGAAATGTGTGGTGGATTTCTTTTTTCGCCGATATCGATAAAGTTTT
CACTCAACGCGGCCTCGAGAAAACGCCGACTGCTGTTCTACCTCCAGCCG
AAACATACCACATGCCCAAACCCGGTGCAACAGACTGGACCACGGTGAAC
AAAGACAAACAAATGGAACTTGACGACGTTATGCAAAAAATGAGATGGAA
AACCAACCAACGGCGAATTTTAGCAAAACCCTGTTTCCAAGATTTTGACA
GACACAATATAGGGTACGTGACTCGATCACAACTTCATCAATGTTTGACG
TACTTGAGTTTAAATGGAACTCCTGCTGAAGTGGATTTGGTGTATGGTAA
ATTTAGTGACGACACCGGCTTCAATTATCTGCGTTTCTTAGAGAAATTAC
AACCGTCTGAAGTACaagaacaaaaatatttgaaacgtATTGAAGATTTG
AAATTGACCAATAAAGAAAAGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026380-exon-sc0000570-1491911889:215779..216193 | TCONS_00026380-exon-sc0000570-1491911889:215779..216193 | Clytia hemisphaerica | exon |
| TCONS_00026380-exon-sc0000570-1510915933:215779..216193 | TCONS_00026380-exon-sc0000570-1510915933:215779..216193 | Clytia hemisphaerica | exon |
| TCONS_00026380-exon-sc0000570-1575043694:215779..216193 | TCONS_00026380-exon-sc0000570-1575043694:215779..216193 | Clytia hemisphaerica | exon |
| TCONS_00026380-exon-sc0000570-1491911889:216577..216781 | TCONS_00026380-exon-sc0000570-1491911889:216577..216781 | Clytia hemisphaerica | exon |
| TCONS_00026380-exon-sc0000570-1510915933:216577..216781 | TCONS_00026380-exon-sc0000570-1510915933:216577..216781 | Clytia hemisphaerica | exon |
| TCONS_00026380-exon-sc0000570-1575043694:216577..216781 | TCONS_00026380-exon-sc0000570-1575043694:216577..216781 | Clytia hemisphaerica | exon |
| TCONS_00026380-exon-sc0000570-1491911889:217352..217574 | TCONS_00026380-exon-sc0000570-1491911889:217352..217574 | Clytia hemisphaerica | exon |
| TCONS_00026380-exon-sc0000570-1510915933:217352..217574 | TCONS_00026380-exon-sc0000570-1510915933:217352..217574 | Clytia hemisphaerica | exon |
| TCONS_00026380-exon-sc0000570-1575043694:217352..217574 | TCONS_00026380-exon-sc0000570-1575043694:217352..217574 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000570 | supercontig | sc0000570:215779..217574 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011992 | EF-hand-dom_pair |
Blast
The following BLAST results are available for this feature:
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