TCONS_00026378 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026378
Unique NameTCONS_00026378
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length797

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026378 ID=TCONS_00026378|Name=TCONS_00026378|organism=Clytia hemisphaerica|type=transcript|length=797bp
ATAACCCTGTCAATATTGttgtcaaatagtgtcactttgtctagaaaatg
actggttacttcaaaggtcactttttagtattctgaggacttgattaAAA
CATTCTCTACTGTgaagagagcagataaactcgataatccaaatttatct
ggtcgccggtcgtggtcgctggtcgtggtcgccatttctggtcgatgttt
agaaactcccatgAAAAAGGCCGCCTATGACCTCGGTACCTCAAGATTCA
TTTTATATTGTCCATCCCTTTGTTAAACATTCACGCCGTATAGTTTGCAT
TCGTAAGCAGTAAACAATCGGATTAGCAACGTGGATGGCCGACGCGAAAC
TGTACACCCAACATTTGACGTACGTCGAAACGAACAAGTCTTTCCGGAAA
AGCCGATAACCGGCATTAACTAAATACGGTAAATAACATATACCATATTG
AATGATAATAGCTCTGGTCAATCGTGAAATACGACCCATAGCTCGTTTCA
CTTGAAGTCTCCCTTCCCGCTCAGAATACCTCAATCGTGAAGTTTCTCTA
TACACCACATACTGTACAACCAATGCAAAACCATAAACACTAGCTACTAC
AACTCCACTAGCAACTCGTATATGATGTCTATATTTTCGATACTTAACTA
GAATAAGGAATACCGCCATAATTGTTATAACCCATAAAGAGAACATGGGT
ATCATAAAATATCGTCGCCGTAAACTTATAcatttctgcattttcataGG
TTTTAGTATAGCAAGACATAGTTCCAAGGCGATAAACAACAAATTGA
Run BLAST on NCBI

transcript from alignment at sc0000570:163123..164346+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026378 ID=TCONS_00026378|Name=TCONS_00026378|organism=Clytia hemisphaerica|type=transcript|length=1224bp|location=Sequence derived from alignment at sc0000570:163123..164346+ (Clytia hemisphaerica)
ATAACCCTGTCAATATTGttgtcaaatagtgtcactttgtctagaaaatg
actggttacttcaaaggtcactttttagtattctgaggacttgattaAAA
CATTCTCTACTGTgaagagagcagataaactcgataatccaaatttatct
ggtcgccggtcgtggtcgctggtcgtggtcgccatttctggtcgatgttt
agaaactcccatgAAAAAGGCCGCCTATGACCTCGGTACCTCAAGATTCA
TTTTATATTGTCCATCCCTTTGTTAAACATTCACATCGTATAGTTTGCAT
TCGTAAGCAATAGACAATCGGATTAGcaacgttaagaacatttaattCCT
AAGTCAATTGAATggtgacgaaaaaaaacttGCAAAAATCTGTGGTATTT
TTTCCCTGGTAAATTAAATAGAAAATATCATTTAACAGATGCAAGAATCC
TATGAAAAAAGCTAATTAGGCTTCATTTCGGTACATCAAGATTCATTTTA
TATTGTCCATCCCTTTTAACATCTCCTGtatctttcaaaacaaatataTC
ATTGGTATTTATTGAGTAGACAGAGGTTAACTCTTTATGGTTCATCTCTC
TATCGTGAAACTGTCCGCTAATATTATAAGATTCCTTACTGCGTTTTGTT
GTGATTGATTTACATTTATTCAATATTCCATTGGAAGGACATAACATTGT
TAAACATTCACGCCGTATAGTTTGCATTCGTAAGCAGTAAACAATCGGAT
TAGCAACGTGGATGGCCGACGCGAAACTGTACACCCAACATTTGACGTAC
GTCGAAACGAACAAGTCTTTCCGGAAAAGCCGATAACCGGCATTAACTAA
ATACGGTAAATAACATATACCATATTGAATGATAATAGCTCTGGTCAATC
GTGAAATACGACCCATAGCTCGTTTCACTTGAAGTCTCCCTTCCCGCTCA
GAATACCTCAATCGTGAAGTTTCTCTATACACCACATACTGTACAACCAA
TGCAAAACCATAAACACTAGCTACTACAACTCCACTAGCAACTCGTATAT
GATGTCTATATTTTCGATACTTAACTAGAATAAGGAATACCGCCATAATT
GTTATAACCCATAAAGAGAACATGGGTATCATAAAATATCGTCGCCGTAA
ACTTATAcatttctgcattttcataGGTTTTAGTATAGCAAGACATAGTT
CCAAGGCGATAAACAACAAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014810XLOC_014810Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026378-exon-sc0000570-1491911889:163123..163400TCONS_00026378-exon-sc0000570-1491911889:163123..163400Clytia hemisphaericaexon
TCONS_00026378-exon-sc0000570-1510915933:163123..163400TCONS_00026378-exon-sc0000570-1510915933:163123..163400Clytia hemisphaericaexon
TCONS_00026378-exon-sc0000570-1575043694:163123..163400TCONS_00026378-exon-sc0000570-1575043694:163123..163400Clytia hemisphaericaexon
TCONS_00026378-exon-sc0000570-1491911889:163828..164346TCONS_00026378-exon-sc0000570-1491911889:163828..164346Clytia hemisphaericaexon
TCONS_00026378-exon-sc0000570-1510915933:163828..164346TCONS_00026378-exon-sc0000570-1510915933:163828..164346Clytia hemisphaericaexon
TCONS_00026378-exon-sc0000570-1575043694:163828..164346TCONS_00026378-exon-sc0000570-1575043694:163828..164346Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000570supercontigsc0000570:163123..164346 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.321495	0.583003	0.191696	0.460773	2.55388	1.93956	2.0322	1.90745	0.752103	0.853049	1.29134	1.29491	0.920389	1.01545	0.618927	0.41811	0.159396	0.985816	0.863077	2.06434	1.05083	1.12281	0.71094	0.229018	1.39711	1.65762	0.506462	0.310077	0.154212	0.241504
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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