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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026376 ID=TCONS_00026376|Name=TCONS_00026376|organism=Clytia hemisphaerica|type=transcript|length=283bp
CTTTTGGATTGACGATGAATCAATTTATCTCGATTTGCATCGTCATCCTG
ATTaagctCTTTACCATCAGTGAAGTTTGGGCTGATACTTCGGACGAATT
GAAAGCGAGTGTGGAGGAAGATTACTTGTTTTACGATGGCTCACTGGAAG
ATTTGAGATTGAACATCCACTGTCCACGATATCCCAATGGATCATATTAT
ATGAAGATCACATGGGAACCTATTAAAGGGAACAGTTACTACTTCATCCA
CGTGAAACCTGTCGACGAATTTGGAGTTCAGAT Run BLAST on NCBI transcript from alignment at sc0000570:67911..71534+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026376 ID=TCONS_00026376|Name=TCONS_00026376|organism=Clytia hemisphaerica|type=transcript|length=3624bp|location=Sequence derived from alignment at sc0000570:67911..71534+ (Clytia hemisphaerica)
CTTTTGGATTGACGATGAATCAATTTATCTCGATTTGCATCGTCATCCTG
ATTaaggtaaaatatttttggttgatttgggtcccaaatttacgaatttt
caaaatgtgacATTGTcgacttttggtaatttttgacaattttcagggtg
gaaatgagaaaaaatgaaatgttcTTGCCTCTACGGGGCATGACACTTCA
TAAGTGATTCTTTATCTCTGACAGTAAATTTTCCCTTTTGGACTGGAATT
ATCCGTAGTGTCACCCTCGCTAAATGAGTGGGTTCCATATCCCGGTGGGG
GAagtgaccttgacggccgacctGGATGTGCCGCTGGACTTTATAAAGCG
GACCGTGtaagatatgaatgtttggtaaatttgggaccctgtcagaacaa
aaataaaaatattctctcatttccaccctgaaaattgtccaaaataacca
aaaatcaACCTTGCCAGAAACAGAACTTGTAATTGGTATAAAATTTGGCG
GACCCTGTCAGATTAATTTAGAGCTATCAGGAACCCTGACCAGAGGCACG
TCACCGAAGTGTATAAGTGCCTCCCCTGGGAGTCATTGCCACTAAAAGGG
ATTTAAGATCAAGTAACTCTGTTTAGATACAGTTTACACGTTGGGGTTCA
TTTTAGATGTCCTTCTAGAAGCGGGAACTCGACTACCTTTTGCTTTTAAT
GATTCTGATGGAGCGAAACAGGGGAGGAGTACATGATTTTTATGTACGAa
taaactatgtaagaacataaggcttctatGACCAATatgttgagaacaag
ttaagaacattttaaggtttgtgaacacccaatttcttaggagaaAGGAC
AAAAATTCTCACAAAATGGCgagaataagaacatgttaatgACTTTTTAG
ggtttaaactcaaaaagttaagaatatccaaagactttaaaattctgggt
gttcttataaaaaaacgtgtagtcctATTGCAGCGCCATcacattcaaat
cagaaagtgAAGATACTATACGGCAGATTTTCTGAATATAGATGTCcttt
acagttgacgctctctaattcgatcttcaaggggaattggattttcatcg
aataagggagcgtcgtttatgagagtttcttgttgacggcgactttcaat
attatcgaataatggagcgtatcgaatagagAACGTCAACTGTACTTCAC
CGTAATTACGAAATTATTTTTAACCTATCAAGCTTCGACAGCTGTGGATA
CGTACTAATTACCCGTTGACGTCACCCTTCAACTTTCGAATGAAACATTT
TCGGATGGGCACGTGCCTCAAACatgaaacaataaaacaaaagaaacaat
ttccttttaaaaatttttgtgaaaattttttgattacaATTACAAGGAAC
TTAAATAAAACAAAGTTTCTTGATATTAGATAATGTTCACTAATCTTCTT
ATTCGTACTAATTCAGACTGTTGATTTCCTCCTAACCTTGCTTGACccat
aaacataaaaaatgttgCCCAAGTAATATAGGAAGACTTTAGTACATTTG
CttctttctatatttttttttagctCTTTACCATCAGTGAAGTTTGGGCT
GATACTTGTGAGTCGTCTTTATCTTTCACGTTGTTTTGTAACATTAAAAA
TTGTTGGAAAATCTTTCTAGATTTCTTTTGTAAGAAGGAATGAATTTTTG
TTGAACCTCGgctattttttgtatttttaataattttttaactcttttta
cTCCCCCTTTAAActcccccttctcacagacctactCCACTAGGAACCCT
TCCCACTTCCCATTGTCAAAAATATCGTCCTCAGTGGAAAGTTATATGCT
CCAGTTTTCGTCCCCGGTGAAAATagtcaaataaacaaatctgCAATATA
TTGTACTTTTTTTTTCCATCCCTACTGGATTTTGTGACCTGAAACAATGG
AATCAAAATCCCAAGCTATAAAAACAGGGAAATATCAATcaccatcgagt
ttcagtccataATTTTTGCCCCCACTGGATAAAAAAAtcataccgggtct
gtgagaaggcgTGTACTCAAGCCAAGTGTTCTCTTCCTTTCTCTCTCCCG
CGACTATTTACTTTCTTCTTTAGCGGACGAATTGAAAGCGAGTGTGGAGG
AAGATTACTTGTTTTACGATGGCTCACTGGAAGATTTGAGATTGAACATC
CACTGTCCACGATATCCCAATGGATCATATTATATGAAGATCACATGGGA
ACCTATTAAAGGTATTACacattttttctataagaacaaactatataaaa
acataaagcTTCGGTGACGTCTATTTACCAAAATCTTTTCCCCGATTGcg
aaataaaaagttaaaatctgggaattttcttaattttttcgcCTTTCCAT
ATAATGTAGCCTAATTAACTAAGCGCGTATCTACAAGTCTAAGGCACATG
GCTTATGGCGCTATAGCGTTTTGGTtgcttttataagcaactccacttcc
gttttgtgaaaaatttgattcGAACACCCATGACATTATCATGTTTTTAG
GTTTGCCAAGCTAAAAAACTTTCACTTTacgagaaagtaaaaaaaattgg
caaattTCAGGGCTTgagccttagcaacctggttgcttataaaaaatgtg
tactacAAATGGCATTATCTTCTTTCTTCACAGGGAACAGTTACTACTTC
ATCCACGTGAAACCTGTCGACGAATTTGGAGTTCAGATAAATACTACCAA
GGTATTTCTTATTGTGTTTGTCCACGTTTTTGGTCTACAAATAAGTTACT
TCTTGTAcccgtttttataagaacaagttaagaagattttaaggcttctc
GGGNctatttattttcttctttagcGGACGAATTGAAAGCGAGTGTGGAG
GAAGATTACTTGTTTTATGATGGCTCACTAGAAGATTTGAGATTGAACAT
CCACTGTCCACGATATCCAAATGGATCATATTATATGAAGATTACGTGGG
AACCTATTAAAGGTATTACACATttattctataagaacaaactatataaa
aacatgaaGCTTCGGTGACCaaattgttaagaacattttaaggctttgtg
gactcgttttcataggaaaatggacaaaatattcacaaaattgtgaaaat
aagaacatgttaaaaacatgtttaaggcaaaaactcaaaaagtaggTCTA
TTTACCAAAATCTTTTCCCcgaaataaaaagttaaaatcttggaattttc
tttattttttcacctTTCCATATAATGTAGCCTAATTAACTAAGCGCGTA
TCTACAAGTCTAAGGCACATGGCTTTTGGCGCTATAGCGTTTTGGTtgct
tttataagcaacttcAATTCCGGGTCAGGGCTTCGAACAcccatgatatt
ataccatatttatgcttattgggtcaaggaTTATCGTTTGCCAAGctaaa
aaacttttactttacgagaaagtgaaaaaaattgacaaacttCAGGGCTT
GAGCTTTAGCAACCTGGtcgcttataaaaaaatgtgtactacAAACGACA
TTGTCTGCTTTCTTCACAGGGAACAGTTACTACTTCATCCACGTGAAACC
TGTCGACGAATTTGGAGTTCAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026376-exon-sc0000570-1491911889:67911..67966 | TCONS_00026376-exon-sc0000570-1491911889:67911..67966 | Clytia hemisphaerica | exon |
| TCONS_00026376-exon-sc0000570-1510915933:67911..67966 | TCONS_00026376-exon-sc0000570-1510915933:67911..67966 | Clytia hemisphaerica | exon |
| TCONS_00026376-exon-sc0000570-1575043694:67911..67966 | TCONS_00026376-exon-sc0000570-1575043694:67911..67966 | Clytia hemisphaerica | exon |
| TCONS_00026376-exon-sc0000570-1491911889:69484..69517 | TCONS_00026376-exon-sc0000570-1491911889:69484..69517 | Clytia hemisphaerica | exon |
| TCONS_00026376-exon-sc0000570-1510915933:69484..69517 | TCONS_00026376-exon-sc0000570-1510915933:69484..69517 | Clytia hemisphaerica | exon |
| TCONS_00026376-exon-sc0000570-1575043694:69484..69517 | TCONS_00026376-exon-sc0000570-1575043694:69484..69517 | Clytia hemisphaerica | exon |
| TCONS_00026376-exon-sc0000570-1491911889:70034..70171 | TCONS_00026376-exon-sc0000570-1491911889:70034..70171 | Clytia hemisphaerica | exon |
| TCONS_00026376-exon-sc0000570-1510915933:70034..70171 | TCONS_00026376-exon-sc0000570-1510915933:70034..70171 | Clytia hemisphaerica | exon |
| TCONS_00026376-exon-sc0000570-1575043694:70034..70171 | TCONS_00026376-exon-sc0000570-1575043694:70034..70171 | Clytia hemisphaerica | exon |
| TCONS_00026376-exon-sc0000570-1491911889:71480..71534 | TCONS_00026376-exon-sc0000570-1491911889:71480..71534 | Clytia hemisphaerica | exon |
| TCONS_00026376-exon-sc0000570-1510915933:71480..71534 | TCONS_00026376-exon-sc0000570-1510915933:71480..71534 | Clytia hemisphaerica | exon |
| TCONS_00026376-exon-sc0000570-1575043694:71480..71534 | TCONS_00026376-exon-sc0000570-1575043694:71480..71534 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000570 | supercontig | sc0000570:67911..71534 + |
Blast
The following BLAST results are available for this feature:
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