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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026366 ID=TCONS_00026366|Name=TCONS_00026366|organism=Clytia hemisphaerica|type=transcript|length=1546bp
GTTCAGGTCTGAGAAACGGGAACAACAAGGAAGAAGACTtgaaaacaaac
attttctAAAGAGAggaattgtttaaaatttggCCATGTCACCTAAATTG
ATCTTCGTTATCTTGATTTTGATCCAAGCATCATCCAACAATGGAAGGAT
TGTTCGTAACAAGATCATTGAATCACCTAATGGaaccaaaatcaaaatcc
aATACATCGTCATGACCGGATTTAATAACAAGAAGCTCCAAGGGCCAACA
TCTATTCAAACAACCATGGTTAAAAGTGTTAGCCATTGCAAAGCAGAATG
TATCCGGGTTAACAGCTGTATCTCCTTCAATATTTTTCCGGCTGGGTCAT
TTTTTGATTGTCAACTTTTTGACACAGATCATTATATTGACCAGCAAATT
TTAACAGATCAAACGGGATATCAATACTTCGTTATAAAGAGTAATTGCAG
TGTTGGAGATCCAAACCTTAAATGTCCAAATGAATTCACATACTGTAAAC
CAAACTATGATACAGACACCTCCACGTGTGAATGTCGTTTTCCAGGTTGC
TTAGATCCAGTGGTTTATACTTGCACACCAGGTCCAACCATAAATGATAC
AGATGCATACGAACTGAGTTCAGGGATAACGGAAATTGGCACAACATCAT
CTGGCTGTCCTCAATACACACTCAAATTCAAATTTATGATGACCGCCATA
TATAGTTCTGCGTATAGCAAAGTTCTTTCTGTGGTTGATGCAGGTAGTAA
TAGCGAATGGATCAGTTTCCGTGTAGATCGGAGTCTTAGGAGTCTTTTAA
CGGGTCTTCGTGGTGTGGGTGGTAGCCAGACCATTGTTGAGCCTTACCAA
GCTAATGTCGAATATGTTATCATAGTTACATCATATAAGGAAGCTGATGG
TGTGGTATTATAGAGTTACGTCGAATGGTAATGAGAAGTTGGCCAGGACA
CATACCAGGAAGACTGGAGCAGCAGCtgaaatgaaaatcaaagtTGGCCG
ATGTGGGGCTTGTGTAGTTAGTGATtttgaatatatattttaaattttga
tacagtggagtctctataactcgaacattCACGCAAATTTATTAGAGATC
AGAAAAAATTTGAGAGTTGTGGAGTAAGGTATTGTTATTTGaaaggacga
gaaaacttgtcgGAGTTAAGGAAACATTCTACTTATAGATATTCGAATTA
TGGGGAGTCTACTGTGTTCGATCTGGATGCATTTTAACAGGCCGAGGATG
AGTTTTCTCTTTCAACAAACTTTGCTGATATTGTCATACAATcaactttc
tataattcgaaaccTCTATTACTGGAATCTTTCTGCAACTCGACCTAAAA
TATTAGTCCCCTCAGGTAATGAGGGGTATAAATTACTTTCTGTAATTTAA
GTCCTTTTCTAATTCGAAGAGAACTTTTtatcccttgaagatcgaattag
agagtaaTTATCTTGGTATGGGTGGGTCAAGGGTCATCTTTAAATTGGTC
CGGGATAAAAAGGcccaaaattttggattttctcaGCAAAAAGTAG Run BLAST on NCBI transcript from alignment at sc0000570:252..8256+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026366 ID=TCONS_00026366|Name=TCONS_00026366|organism=Clytia hemisphaerica|type=transcript|length=8005bp|location=Sequence derived from alignment at sc0000570:252..8256+ (Clytia hemisphaerica)
GTTCAGGTCTGAGAAACGGGAACAACAAGGAAGAAGACTtgaaaacaaac
attttctAAAGAGAggaattgtttaaaatttggtGAGTACAATATAtatt
ttcgaccgtagtcgcgcgggcatttttttgtccactttatcACACTAGaa
ccgtcccaatccttttttgacgcattcgtctattgtctataggtgcgaaa
aaaggactgggacggttaaaacgtcaaaaaatgtaTCGCCCTGGGAACAA
GGTTCTTTTAAATCAAGGTCTTTACTTTCTAGcctaattacacccctgtc
ccaatgccccggtagaactttctccctcagtggggatgaaaatttctatc
aaaatgccaatggggatagaaaatctattgtttccagctcgaaaattcca
gtggggatggttttggagtgcaattttttacattcagttttcaatttggg
ataaaatcatagagcaatttcgcagtggggttgaaatgtTAGAATATtct
ttccaccggggacgattttttggcctattttcctaccggggtgggggtcc
accgggtctgtgacacagggatgtcCAGTTGATATAAAAAGAGTTAGAAA
TCTTtattcataaaataaaataaaacgtgGTCTATTTCCATTGGTGGTTG
AGAAAGGGTacagaaaatcaattttaattaaAGTCCAAAACTTACACTTC
GGCCAATTTCTttgtctgttgtcattgtcttttctcattagAGATTTtac
aaaccgaccgctgcgatggagtgttggtgagagaggggagacgatgagag
aagtgttgctatatatataaatcatacttcatcgcagagctctctgtacg
ggaatttttttatcaaacagacaatgcacaCAGAGTGTACTCTGAGGCGA
TAAACGTTAGATaaactctggtacagagtaccaTATTCCGAGATATTAAA
TGAACCAGCAATTGGTTTTTAGAGGTGCCAAAGCCTTTGATTACAAGTTT
CATTCTTTTaactttagcaaaaaaattgtagatttttgCCATTGCAAGAC
TTGCAAGCATCTGTAGAAACTTCATTACTAACGGAGCGCAAGAATGCTTC
CAAGTTTGCTGAAATTACACAATTCTTTATAAGCTATCAGATgccgaggt
agtgaattgtgtcacttcgtagggcaccccttagatcagggcaaattttt
gatattatgctcctaatagggtgtagaattgacaaaagaaaattgccttt
cgaatctcctgcagttttcgagtgaatcgatttttagttaatcgatagaa
cttgtCAAGGGTAAccgaaaatggtatggtttgttaactttcgatgtccA
AATCTCGAGagattttggtttaaatattgaaaattatcgatattttttgc
tgagtcagcagtttttcagcatatttacccaccttaaaaatgaattatct
cgagatttAGACATAGAAAGTTAACAAAtgataccatttttggatactac
taattcagggctattcagccgtgggaatgattttttctgaaaatgctcct
aggaaaatgctgacgtcatcggaaaacgcccaaaacgtcgatttttcgcc
ttaaaaatgtcatttctcggcaccaggtggtcgaaacttaaaaaataacc
ccattttctttatctacttttcacgttGAATCAGTTGGTAGCATCaggta
tttgattttcagactccGAAAataccgttagtaaaggggggacccttgac
aagttctatcgattaactaaaaatcgattcactcgaaaactgcaggagat
tcgaagggcaaatttttttgtcaattctacaccctattaggagcataata
tcaaaaatttgccctgatctaaggggtgccctacgaaaaccatctttaag
gccttttctgaacCTCGGACGCTGGCCTATAAAAAATGTATACTGGTCAA
GCTAACACACTGCTGCTAGCTTCGAAAAAAAAGACCACCCCCTCACTTAG
ATCATATTTCAAATTCTTGATCCATTTTCTAAGATTgatattaatttatt
ttttacaggCCATGTCACCTAAATTGATCTTCGTTATCTTGATTTTGATC
CAAGCATCATCCAACAATGGAAGGATTGTTCGTAACAAGATCATTGAATC
ACCTAATGGaaccaaaatcaaaatccaATACATCGTCATGACCGGATTTA
ATAACAAGAAGCTCCAAGGGCCAACATCTATTCAAACAACCATGGTTAAA
AGTGTTAGCCATTGCAAAGCAGAATGTATCCGGGTTAACAGCTGTATCTC
CTTCAATATTTTTCCGGCTGGGTCATTTTTTGATTGTCAACTTTTTGACA
CAGATCATTATATTGACCAGCAAATTTTAACAGATCAAACGGGATATCAA
TACTTCGTTATAAAGGTATTATCCTAAGTATTAAAGTATGAATTCCTAAA
GAATACCGAAATTGGACACATAATCCCTCTCCCTTGTATATCATTTTTCC
CCGATACTATATcactttttatttgacgtcagttagtcaacacgcatttt
gtgcagttcttcaaaaatggttgaaatttagcaaaatcaaaaacatgaac
gaaaaaaccgacaaaaagcaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAAAAATGAATTCCAAAGATGAcgatttcgtttgg
catgtaagaggaagccctagaacaaaccttcgcctagttcgaaaacctag
gacaaagaccaaaacaacgtcttctcttcTGTCCATNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTcacgactggacgac
agatgaagaattagacaatttataaatctaaaattatttcgtagaggtcg
atagacctgtgaaatataattctatgaataaaaaaaaataaaatagaagg
tttttaaagaaaaagaaattcaaaaaactttcagcaaaattaatattttg
taTGGAAGCTATAATGGGAAGCTTTTGTtggaccatgttcgcacgtgacg
gttccgtttcgctccgaaacgaaatgaagccttTCTATTGGTTGTattca
agtgttacgtcacttctaacccatagaatggcttcattccgtGTGGAAAC
TAAAAGAAGGAGCTTTTCTTTAAGAATATGAAATTTTTCGaagattgaaa
gaaattttcaatgtgaaaaagcttgtgaattaaaattgatgagtaagcaa
acgatatcacttttattaaaaaacaaaacctttaagttatTTTTCTAAGA
AGAACAAGAAGAGTCGATTTCCCAGGATCTCAACTTAAGTCTGTTTCCGT
TTATATTTCCAAGACAAACTCCTGCCGTACAGAATCAAAAACCAGAGTTA
TTTTGTGATTTATTTCAGAGTAATTGCAGTGTTGGAGATCCAAACCTTAA
ATGTCCAAATGAATTCACATACTGTAAACCAAACTATGATACAGACACCT
CCACGTGTGAATGTCGTTTTCCAGGTTGCTTAGATCCAGTGGTTTATACT
TGCACACCAGGTCCAACCATAAATGATACAGATGGTAAGTACAATgatgg
tcgaaatctattgagaattaagcttatttcctcgtttttcgaaatttgga
gttcgggcgagaaagtcgagtttgggccatctcttaaatttaatcgCATA
TTTCAATTTGTCTCGGGTTTATatacttccaggctatattatgagcctta
ttggaccatttttgaacttttggatcctcagatcctaaggtccacTACCC
TTGGAAAGGGGTAGGAGCATTGAAGTATAAGCCTTTTGAGCTAGAATTCT
AAAttctagccattcgggcttaTACTTTAATGCTCCACGGGTAGTGGTGA
CACATTTAAGCTAGAGAAAAATTGCTTCAAATCTGCAACTGCTGCTAAAA
ACTGGGGTGCAAATTAACTTGAAATGTTATTGTTTTgagctaaagtctgt
ctcgaaataatttgcagctggagaaaaaaatggctgtaacctttgataga
attcgaatcaagttgcgattttgtgctcgttaaaaagatNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGGAGGGTTAAGcggcgg
atgaaaaataatgcctagggtctgaagtttgtcgaacaaagattgtcttg
catgggaatatatagagcagtgcagaagaaagtgttttagtgttttcaac
agagttagttcggcaaccacagaaagggtctaaatGATTGTTTTTAGTCA
GCAttctatttttattacattATGTAATGAATTTAATGAGTACATAGAAG
GGAAACAATCGCCGTTTAGTAGTGTCAACTGTGCATGCGTCCAAACAagt
ttccattgttttgattttagcgaccgcTCTTtcccgtaaaaaaacggtag
gtaaaattCCGGTTCTCGTAAGGAAACCTAGCTACCTAACCATAACTTCc
tttcctctagatgaatttttgtgaaatttttaggAGAGAtctataaaatt
atcattgatatcatgttcaaatatctaaaccattctctttaaaggaaaga
aaaaaattgacaatgtttacattcctctaaccttccacagtactaaagtc
cGCATTTTTACCTACGGTTTTTACGGTAGAACACGctcgagactcctaaa
cggtgtattataATATTTACACAtccaaattaaattttaaggcttgaagT
GTCCAGAGTTATTATATCAGCATATAGGATTAATGGTTGATCTAATACTA
AAAAGTTGATATATTTATTTAAGCTGAATACACTGACATTGcgagaagat
ttttaaaaatatgaaaaatcgtACGTGGTGCTAGGGGGGGGGTACATGCA
AAACCGACCTTAGTGGTCATAGCTTGAAGGTAAAGCAttcagctacggtg
cgcaaagTCGTGGGTTCAATCCTTGGCCAGATCATACCAAAGACTCAAAA
AATgttacttgatgcctctcttcTATTTGATGATAAGCAATCAAGAGAAG
GGTAAAGGTAagggagcaatccagggagaaagagtggcgccctctccTAC
CTTCGGCGGGTAGATAACTATCGAAAAAGGAGCCTCGACACCCCGACTGC
TGTCACAGACTTACTTTAGACCGACCTTAATCCCTTAATCCCttattttt
ttctaacttttcaGCATACGAACTGAGTTCAGGGATAACGGAAATTGGCA
CAACATCATCTGGCTGTCCTCAATACACACTCAAATTCAAATTTATGATG
ACCGCCATATATAGTTCTGCGTATAGCAAAGTTCTTTCTGTGGTTGATGC
AGGTAGTAATAGCGAATGGATCAGTTTCCGTGTAGATCGGAGTCTTAGGA
GTCTTTTAACGGGTCTTCGTGGTGTGGGTGGTAGCCAGACCATTGTTGAG
CCTTACCAAGCTAATGTCGAATATGTTATCATAGTTACATCATATAAGGA
AGCTGATGGTGTGGTATTATAGAGTTACGTCGAATGGTAATGAGAAGTTG
GCCAGGACACATACCAGGAAGACTGGAGCAGCAGCtgaaatgaaaatcaa
agtTGGCCGATGTGGGGCTTGTGTAGTTAGTGATtttgaatatatatttt
aaattttgatacagtggagtctctataactcgaacattCACGCAAATTTA
TTAGAGATCAGAAAAAATTTGAGAGTTGTGGAGTAAGGTATTGTTATTTG
aaaggacgagaaaacttgtcgGAGTTAAGGAAACATTCTACTTATAGATA
TTCGAATTATGGGGAGTCTACTGTGTTCGATCTGGATGCATTTTAACAGG
CCGAGGATGAGTTTTCTCTTTCAACAAACTTTGCTGATATTGTCATACAA
TcaactttctataattcgaaaccTCTATTACTGGAATCTTTCTGCAACTC
GACCTAAAATATTAGTCCCCTCAGGTAATGAGGGGTATAAATTACTTTCT
GTAATTTAAGTCCTTTTCTAATTCGAAGAGAACTTTTtatcccttgaaga
tcgaattagagagtaaTTATCTTGGTATGGGTGGGTCAAGGGTCATCTTT
AAATTGGTCCGGGATAAAAAGGcccaaaattttggattttctcaGCAAAA
AGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026366-exon-sc0000570-1491911889:252..333 | TCONS_00026366-exon-sc0000570-1491911889:252..333 | Clytia hemisphaerica | exon |
| TCONS_00026366-exon-sc0000570-1510915933:252..333 | TCONS_00026366-exon-sc0000570-1510915933:252..333 | Clytia hemisphaerica | exon |
| TCONS_00026366-exon-sc0000570-1575043694:252..333 | TCONS_00026366-exon-sc0000570-1575043694:252..333 | Clytia hemisphaerica | exon |
| TCONS_00026366-exon-sc0000570-1491911889:2310..2666 | TCONS_00026366-exon-sc0000570-1491911889:2310..2666 | Clytia hemisphaerica | exon |
| TCONS_00026366-exon-sc0000570-1510915933:2310..2666 | TCONS_00026366-exon-sc0000570-1510915933:2310..2666 | Clytia hemisphaerica | exon |
| TCONS_00026366-exon-sc0000570-1575043694:2310..2666 | TCONS_00026366-exon-sc0000570-1575043694:2310..2666 | Clytia hemisphaerica | exon |
| TCONS_00026366-exon-sc0000570-1491911889:4470..4635 | TCONS_00026366-exon-sc0000570-1491911889:4470..4635 | Clytia hemisphaerica | exon |
| TCONS_00026366-exon-sc0000570-1510915933:4470..4635 | TCONS_00026366-exon-sc0000570-1510915933:4470..4635 | Clytia hemisphaerica | exon |
| TCONS_00026366-exon-sc0000570-1575043694:4470..4635 | TCONS_00026366-exon-sc0000570-1575043694:4470..4635 | Clytia hemisphaerica | exon |
| TCONS_00026366-exon-sc0000570-1491911889:7316..8256 | TCONS_00026366-exon-sc0000570-1491911889:7316..8256 | Clytia hemisphaerica | exon |
| TCONS_00026366-exon-sc0000570-1510915933:7316..8256 | TCONS_00026366-exon-sc0000570-1510915933:7316..8256 | Clytia hemisphaerica | exon |
| TCONS_00026366-exon-sc0000570-1575043694:7316..8256 | TCONS_00026366-exon-sc0000570-1575043694:7316..8256 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000570 | supercontig | sc0000570:252..8256 + |
Blast
The following BLAST results are available for this feature:
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