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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026353 ID=TCONS_00026353|Name=TCONS_00026353|organism=Clytia hemisphaerica|type=transcript|length=3080bpRun BLAST on NCBI protein sequence of TCONS_00026353-protein >TCONS_00026353-protein ID=TCONS_00026353-protein|Name=TCONS_00026353-protein|organism=Clytia hemisphaerica|type=polypeptide|length=526bp QEFRLQTLDVIHDIVFVIGSTECFTEIFQSLQQETPTWNKLEARLFCMNPRun BLAST on NCBI transcript from alignment at sc0000569:201132..223958- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026353 ID=TCONS_00026353|Name=TCONS_00026353|organism=Clytia hemisphaerica|type=transcript|length=22827bp|location=Sequence derived from alignment at sc0000569:201132..223958- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000569:201132..223958- >TCONS_00026353 ID=TCONS_00026353|Name=TCONS_00026353|organism=Clytia hemisphaerica|type=CDS|length=26877bp|location=Sequence derived from alignment at sc0000569:201132..223958- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00026353 vs. Swiss-Prot (Human)
Match: TNPO3 (Transportin-3 OS=Homo sapiens GN=TNPO3 PE=1 SV=3) HSP 1 Score: 391.734 bits (1005), Expect = 2.614e-119 Identity = 193/530 (36.42%), Postives = 316/530 (59.62%), Query Frame = 3
Query: 6 EFRLQTLDVIHDIVFVIGSTECFTEIFQSLQQETPTWNKLEARLFCMNPLSKFIS-MNYDVPGHVIQMLLSLPKDIHIMVQHTAIVLLGDMSRWISDHEQFIDATFQFILNGLQHKDLAQMASFSLSKFCMQCCQKMNKMFPVLLEVCKVVETLNVDNEGVIGILTGCALVLSRMPMDYVTDGLMHLCTPNVQPLYEILQ----SSAAGDPVKYLDRLAAIFRDIQINQVAAGQEHPCKKVIAQLWDMFKMVVQKYKADDRIMERHFRCIRYGIRCLGQDFIDLMGNLVELLVTLYNEHQHSCLLYIGSVLADEYGGIKAVEGTIMQMLKSFVPPTFKILSQAHGLQNHPDTVDDFFRLCIRLLQRCTLSFLKMESIDSVVQLSIAGTTLNHRDGNTSIMKFLWQLCKSGYLEQSDSRFAEKEERNRLLEQLLAKFGQDIVNGLVAATAGGIQVYMLPGVADTLWEMLEFNRQATAQWFQVALSNLPSHNASGVINATPQQIEYFYNTVCSSTSVKILWGEFREFSKYFR 1580
EFR++ D++ D++F+IGS ECF +++ +L++ P W EA LF M ++K + N V++ ++ LP+ +H V++T+I L+G+MS + + QF+D +++ GL K LA A+ ++ C C M + F LLE+ + +++ + E +G+L G ALVL+R+P+D +T+ L LC+ V L ++L + + DP +LDRLA IFR V GQ HPC+KVI ++W + + K++AD+RI+ER RC+R+ +RC+G+ L+ LV +V +Y+ HQHSC LY+GS+L DEYG + ++ ML++ PTF++L Q +GLQNHPDTVDD FRL R +QR ++ L+ + + ++Q +IA TTL+HRD N S+M+FL L +G + F E R L+ Q++ + GQ +V+ L+ + Y LP VA+ LWE+++ +R +W + +L LP G + T +Q+ F+ V S+ K + R+F++ FR
Sbjct: 398 EFRMRVSDLVKDLIFLIGSMECFAQLYSTLKEGNPPWEVTEAVLFIMAAIAKSVDPENNPTLVEVLEGVVRLPETVHTAVRYTSIELVGEMSEVVDRNPQFLDPVLGYLMKGLCEKPLASAAAKAIHNICSVCRDHMAQHFNGLLEIARSLDSFLLSPEAAVGLLKGTALVLARLPLDKITECLSELCSVQVMALKKLLSQEPSNGISSDPTVFLDRLAVIFRHTN-PIVENGQTHPCQKVIQEIWPVLSETLNKHRADNRIVERCCRCLRFAVRCVGKGSAALLQPLVTQMVNVYHVHQHSCFLYLGSILVDEYGMEEGCRQGLLDMLQALCIPTFQLLEQQNGLQNHPDTVDDLFRLATRFIQRSPVTLLRSQVVIPILQWAIASTTLDHRDANCSVMRFLRDLIHTGVANDHEEDF---ELRKELIGQVMNQLGQQLVSQLLHTCCFCLPPYTLPDVAEVLWEIMQVDRPTFCRWLENSLKGLPKETTVGAVTVTHKQLTDFHKQVTSAEECKQVCWALRDFTRLFR 923 The following BLAST results are available for this feature:
BLAST of TCONS_00026353 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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