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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026346 ID=TCONS_00026346|Name=TCONS_00026346|organism=Clytia hemisphaerica|type=transcript|length=2610bpRun BLAST on NCBI protein sequence of TCONS_00026346-protein >TCONS_00026346-protein ID=TCONS_00026346-protein|Name=TCONS_00026346-protein|organism=Clytia hemisphaerica|type=polypeptide|length=411bp LAERIKKKMVVTISIRNFLRAQKLNKVKGALSIASRSFSEIRYNDLKIHQRun BLAST on NCBI transcript from alignment at sc0000569:175690..182621- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026346 ID=TCONS_00026346|Name=TCONS_00026346|organism=Clytia hemisphaerica|type=transcript|length=6932bp|location=Sequence derived from alignment at sc0000569:175690..182621- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000569:175690..182621- >TCONS_00026346 ID=TCONS_00026346|Name=TCONS_00026346|organism=Clytia hemisphaerica|type=CDS|length=13596bp|location=Sequence derived from alignment at sc0000569:175690..182621- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00026346 vs. Swiss-Prot (Human)
Match: BCAT1 (Branched-chain-amino-acid aminotransferase, cytosolic OS=Homo sapiens GN=BCAT1 PE=1 SV=3) HSP 1 Score: 397.512 bits (1020), Expect = 1.721e-129 Identity = 187/361 (51.80%), Postives = 250/361 (69.25%), Query Frame = 1
Query: 124 RYNDLKIHQTTTPREKPSADSKLVFGKQMADHMLVAEWTIDNGWDIPSIVPYGPLAIPPSASVLHYGIEVFEGMKAYKCTDGSIQLFRPEENMKRLFASAERLSLPTFDKEEVLKCIAELVRVDQDWIPDCDSSSLYIRPTIISTEPSLGVKPPDSAMLFVITGPVGSYYDTGSFQPISLLADPSFVRAWPGGIGDCKAGGNYGPTIYAQKLAQARGCSQCLWLYKD--QVTEVGTMNFFMFWVNEQGEQELVTPPLNGLILPGITRKSLLDLAREWDEFKVSERDFTLQEVAKAASEGRVKEIFGAGTAAVVSPVDKIHYLDDVIEIEN--NGFPIAQRFFDELTSIQYGRTPHPWNYLV 1194
+ DL + T +EKP ++ LVFG DHML EW+ + GW+ P I P L++ P +S LHY +E+FEG+KA++ D I+LF+P NM R++ SA R +LP FDKEE+L+CI +LV++DQ+W+P S+SLYIRPT I TEPSLGVK P A+LFV+ PVG Y+ +G+F P+SL A+P +VRAW GG GDCK GGNYG +++AQ A GC Q LWLY + Q+TEVGTMN F++W+NE GE+EL TPPL+G+ILPG+TR+ +LDLA +W EFKVSER T+ ++ A RV+E+FG+GTA VV PV I Y + I I NG +A R +LT IQYGR W ++
Sbjct: 26 KAKDLIVTPATILKEKPDPNN-LVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYGEDHQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPKLASRILSKLTDIQYGREESDWTIVL 385 The following BLAST results are available for this feature:
BLAST of TCONS_00026346 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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