TCONS_00026326 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026326
Unique NameTCONS_00026326
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length603

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026326 ID=TCONS_00026326|Name=TCONS_00026326|organism=Clytia hemisphaerica|type=transcript|length=603bp
AAAAAGTCCTGATCATCAATATGTTACCATACCGGAGAGCAACGGGAACA
ATAATGGCAGTGTAAGCTCAACTGAACTAAGCAGGAAAAAGACAAATGAC
TACCAAAGCATTTATGGAGATGTACCTTAAAATGGACTCTTATGATGAGA
TGActatcaaaaatgaaatatctaTTACAATCAAGAGAGGGGAGGAGAAC
TCTTTAATTACaagtataaaaatcatactttttcTCCATTGAATTTTATA
AATGATCAGATGTTTATTCTAACATGGATGGGACCAATAGCAgaaataac
aagcaaacaaacaatatAAACAGGGTAATGAACGAGTATGAACAAGATTA
TTAAAGTCCTTTGGTCCAAACTGGTCCAAATGTTAAAAGTGAGTGGCAAA
ATGAATGTTATAAAGATAATATTTAttataaatttatcaatttaccTTAT
TGATAgaattatctttttttaaacgctgatttttctgaagaaaaaactAG
CAGAAAAGTTGTAAATACAATTTTTGGAACTGAgacgtttttttaaaaga
agatcaaaaattttttaagcctatcggtatttttgactttttgaatttta
aga
Run BLAST on NCBI

transcript from alignment at sc0000569:18559..24129-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026326 ID=TCONS_00026326|Name=TCONS_00026326|organism=Clytia hemisphaerica|type=transcript|length=5571bp|location=Sequence derived from alignment at sc0000569:18559..24129- (Clytia hemisphaerica)
AAAAAGTCCTGATCATCAATATGTTACCATACCGGAGAGCAACGGGAACA
ATAATGGCAGTGTAAGCTCAAGTATGAATGTTGACAATAATGTTTACGAA
TTTATTGATAGAACTAACTCTTAATGAAGTGTGATGCATATTATTGTTTT
GGTATGCTTTGAGAGGAGATAATCATGTAAAACTGTTATAAATCATCTAA
CTGTAAGATTTAAAAACAATTGTTGAATTGAGAAATTTTTGGGGAAAATA
TCAATTAAAGCATTGAAGATAAACAAACATAAAATATAAAACAGTAATAA
GGCTAATCTTAAATTAAATTTTTTGTTCTACGGTCTGATCAATGGAAAGA
ATATTGGAAGGCCACTCAATATAAATATAAGGTCGCCAACGTGCAAAATA
ATAACTTCTTGAATTTTGTATGGATCTAAAGTTAATAATTTATTCTTATT
CAGGTTATGGGAATAATTTAAAGCTTTTCCATCATTGCAATTCTCTCTAA
AACAACAATGCGTAGTACTTAGCAGTGCGAAATTGAAAGTATTATTTTTC
AATTTTCAGTTAAGACATGGTCAGGCCCATAGAACACCAAATTTAATTTC
TTTCATGTTCTTTTGCCGCCTTATGTTATATTTTATTGTTATATATTTTA
TAAGTTATATTTTATTTTCTTCTTTTATTTTACATTTAAAACTAAATCTT
AATCAAAAGTTGAATTTGGGATGTATATTAATTCTCATAGGGAAAGGTGT
CTTCTGTAACAATGGGCTTTACAGACTTTTTTTTCAAAATTAAGTTTGCA
TAATTTTTTTTGGTGGGTTGGGACCCAAATAACACAAATCTGAGATATTT
TTTGATTTTTCAATTTTTGAAGGTTCTCAGGCCTTTTTTATGCCCAAAAT
AGGCCAATTTCAGGCATTTTTTACCTCGATAAAAATCCTAGGACCTAGTT
TTATTCTGTTGGTGCTACAAGCCTCAAATTAGGCTTAAGATATTCCTTGG
AAAAAAGTAGGATTAGAATGTAACAATTATATACCTCTACCATATATATA
AACTTAAAAAAGTTAGGTTTTTAGGTTAAATTGACCGAAAGCGGGGAAGA
TCAGGGTTTTGTCTAGGAAAAAATCTAAAATCTGTTCTGTTGGTGCTACT
TTCCAATAGCACACCGTGGTGAATCTAAAAATAGACATCACTTTCTTTAT
TTGCCCGAGTTTCAATCCCATCGTTCATTGCGTTAATTTCTTGTGCACAT
TAATTACACTTATAACAAAGAAAATGTAACAACTCTCACGATTTTGAAAT
CAAAGTGAAAGGGATTATGGGATTGAATGTCGGACAAATTTGAAAAGTAA
TAATTATGACGTTTGCATAACGGAGCGCTATTCTACTTTCTCCCAAAGAA
CATTTTACGCCTACAAGCTTTTTTTAAAATAAGAATACACTTTATAAAAT
TGTCCATGATGAAAATGGCCAAAAAACTAAGAATATGCTAAGAATATCAC
CGTCATTTTGCTACTAAAGCTAAGAATGCCATTTTAGGAGCATTTTCAAT
TATAAATTGTCAATTACCCCCAAGTAAGGCTCAATCCTTACATTGCCATT
TTATGCTTGAGACGTATGTACTAAATGTTAAATCTAGTAAGAATTAGGAT
TCTAACCTAAGAATGTGCTGTAAGAATATTTTAAGATGGTTATCCCAAAA
AAGTTAAGAATATCCATCATGAAATGGATTTACACCATTCTTATAAAAAA
AAGCGTGTAATTTGAGGCTTGTAGCACCAACAGAACAGGTTTTAAATTTT
TTCCCAGGTAACACCCTGTTTTTCCCCGCTTTCGGTCAATCAACCAACAG
AATAGGTTCTAGGATTTTTATCCAGGCAAACATGCCCGAAATTGGCCCAT
TTTGGGCATAAAAAAGGCCGGAGAACCGTCAAAAATTGAAAAAATCAAAA
AATATCTCAGATTTGTGTTATTTAGGTCCCAACCCACCAAAAAAAATTAA
TTTAAACTTAATTTTGAAAGAAGTCTCTATATCTATAGCCAACTGCTACG
TAAAAGCATGAAATCATATGTGACTCCCCAAGCGATTTAAAGTACCTGGA
AATGGGACCGGTCTTTAGACAGTCTTTTAAGGACTGGTAAATGACCGGTA
AAAATTTACTAAAAGGCCGCTACGAGTCTAGTTAATTTAGTTGCCGCTGC
GAAGCGTCCAGTCCTAGACCGGCCCCAGACCGGCCCTGATCGCCCAGTCG
ACANCACTACGAGTCTAGTTAATTTAGTTGCCGCTGCGAAGCGTCCGGTC
CTAGACCGGCCCCAGACCGGCCCCGATCGCCCAGTCGACATCCTTTTACA
ACAATTTTTTCATGTAATCGTTACTAAAAATCACTAACTAGCGGCCCGGA
CCGGTCTAACGAACGACCCGGACCGGTCTGACGAACGACCCAGAACGGTC
TGACGAGCGGTCAGGACCGGTCTAACGAGTGGTCAAGACCGGTCTAACGA
GCGGCCACGAGCGTCTAGAAGCGGCAAGGACCGTTAGAGATCACATTTCT
AGAAGGTCTGGAGGCCGATGTAAAACAAAAATTTAACCGCTACTAGACCG
CTCGTAATACCGGACCAAGACCGGTCTGATTTTCAGGTACTTTAAATCGC
TTGGGAAGTCACATATTTCATATAAAAAACCTTGCCTGGAAGCCTTTTGT
TTCTTTCTATTGTTTCGAACTTGAACTAGCGTTGATAAAGTAGTTTGCTT
TTCTCACTTTTTGATCATGTGATTAAATCTTAAAACCAATTCCAAAAGGA
GTACTTGGTAACGTGATTAAAAACCAAGCACAGCGATCTTTATCTTTTGA
TATTAACAAAGGAAAGAGCTAACAAAAAGTTAAAACAATAAGCTTTAAGA
CCGGCTTTAAGTATTTTATACGGACTATGATGACATGAAATGCGTTAATA
AAAGTAATGTTGATCTCGAACTTTAGACTTTTTCTACGAGAAAAAACCTG
ATAAACATACTCCTGAATTATTATAATATAAATTTTTTTAAGTAATTTTG
TTTGTACATAAACTTTTATAAATGTTTTCTTTTTAAACGATGACGTGTAA
ATAGTGGCTTTTAATCCGGGATGTTATACAGTGTGTCTCTAAAAACGGAA
TTTTAAAATTTAAAAAGTCATATTATTGAACCAATCACTCAGTTCAATTC
CTTTCTTTTTGAAGTTCAATTATTTATAAAGCTTTGAATAAAAATAATTG
GATAAAAGAAAGTGATTTATAATCATATACCAACATCTAGGAAAATGAGA
TTCCATTTTCTTTAGCTTTTTTAGAGGCACACTGCATTATGAATTTTGAA
AATAAAGTAGAGTAGAGATTACAGGTACTGTAATAGAAAAAGCATCCAGC
TCCATGAGAGCTTCTCAAAAAATAAAGATCATCAAATTAAATCAAGCCAC
AAATAAGAATAGGAATGTCTCGTCAAGGGGGTCTTTGATTGGCTTAAAAA
TACAAAGTTTCTCTCATTTCTTTACAAATTCAAACTGGCTTGTTATAGAG
CCTGAACCTTTCATGTCAAAAAAGTCCCGAAAACACTGAAAACACTTTTA
CCTGAAACACCTTTTCTGAACCTTTCATGGTTTTNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATGGT
TTTCTGGGTGTTTTTGGCAAAAACATTTTACCAGAAACACCTTACCTCTC
GAGGTGGTGTGTTTCCAGCATTTCCTGTGTTCCTGGTATTTCCATAAATC
AACTCTCAATTTTCTCCACTAAACTCAGGCAAAAATGCCATTTCCCAGAA
ACACCACCATTTTGTGAACCACTCAGTCTTTTTCCTGGTGTTCCTCGTAT
TTTTCAAGACGATTTTGAAGCTCTTGCAGTGTCCTGACTGAACCAATCAG
ATAAAAATTGGGTTAAAAATCGGGCTAGAAAATCGGAAAAAAAACGGGGA
AATGGGACTTTTCTATACCGTTTCAGCCAGTCGGGACTTGTTTTATAGCA
GTCGCCTTCGACAGGACATTTGGTGTTTATGGTGTTTTTAGAAATTGAAC
CTTTCATACTGGAAAGTGTTTTCTGCAAACCAGGTAAGCAAGGTGTTTTT
AAAAACATGAATGGTTCAGGCTCATAGTTATTTGTGTGACAACTTACTTA
CCTCCAATCCTTGCAACTTGTTCAACTCAATTTTAAATTAGCTAGAATTG
AATTTAAAAATTTGGTTCTATGTCTCTTAAAGCTAGGAAACAATTCCAAT
TTTCGATAATTTTTTTAACACGTGCTAGTACAATCTGAAGCTAAACTAAA
CTAAATACTATGATTTTTTCAAAGTAAAGTTGCCATTGAAAGTATGATCT
AGCAAGCTATTCCTCAAGTGGCATGAAAAAAAAACAACAAATATGAAATT
AATCCTATTAAAAAACAATAACCTTTTTTTATAAACCATTTTTACATTCC
CTCATCTGGTAGTTTAGGGTAATCAAAAATAACAACTTCTTCTAGATTGT
AGGGGCTATTTAAATCTGACCATAAAAGGAAGCTGTTAATTTGGCGTGAT
CAGTTCTTATACTTAGTCTGAGTGAAAATTCCAAAAATTTCCCTCTTTAT
TCTTTTAGCTGAACTAAGCAGGAAAAAGACAAATGACTACCAAAGCATTT
ATGGAGATGTACCTTAAAATGGACTCTTATGATGAGATGACTATCAAAAA
TGAAATATCTATTACAATCAAGAGAGGGGAGGAGAACTCTTTAATTACAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCATGTGAGGGGAATTGGGTAGTCAGTTCAAGGTGCTGACGGGATGCTTA
CTCAAAGCATCTATAGTTGCGAAAATGGGCTCCCAGAGCCTTCTGTAACT
CAACCATGATAGATAGATAGATAGATTACAAGTATAAAAATCATACTTTT
TCTCCATTGAATTTTATAAATGATCAGATGTTTATTCTAACATGGATGGG
ACCAATAGCAGAAATAACAAGCAAACAAACAATATAAACAGGGTAATGAA
CGAGTATGAACAAGATTATTAAAGTCCTTTGGTCCAAACTGGTCCAAATG
TTAAAAGTGAGTGGCAAAATGAATGTTATAAAGATAATATTTATTATAAA
TTTATCAATTTACCTTATTGATAGAATTATCTTTTTTTAAACGCTGATTT
TTCTGAAGAAAAAACTAGCAGAAAAGTTGTAAATACAATTTTTGGAACTG
AGACGTTTTTTTAAAAGAAGATCAAAAATTTTTTAAGCCTATCGGTATTT
TTGACTTTTTGAATTTTAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014791XLOC_014791Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026326-exon-sc0000569-1575043694:24059..24129TCONS_00026326-exon-sc0000569-1575043694:24059..24129Clytia hemisphaericaexon
TCONS_00026326-exon-sc0000569-1575043694:19332..19471TCONS_00026326-exon-sc0000569-1575043694:19332..19471Clytia hemisphaericaexon
TCONS_00026326-exon-sc0000569-1575043694:18559..18950TCONS_00026326-exon-sc0000569-1575043694:18559..18950Clytia hemisphaericaexon
TCONS_00026326-exon-sc0000569-1510915933:24059..24129TCONS_00026326-exon-sc0000569-1510915933:24059..24129Clytia hemisphaericaexon
TCONS_00026326-exon-sc0000569-1510915933:19332..19471TCONS_00026326-exon-sc0000569-1510915933:19332..19471Clytia hemisphaericaexon
TCONS_00026326-exon-sc0000569-1510915933:18559..18950TCONS_00026326-exon-sc0000569-1510915933:18559..18950Clytia hemisphaericaexon
TCONS_00026326-exon-sc0000569-1491911889:24059..24129TCONS_00026326-exon-sc0000569-1491911889:24059..24129Clytia hemisphaericaexon
TCONS_00026326-exon-sc0000569-1491911889:19332..19471TCONS_00026326-exon-sc0000569-1491911889:19332..19471Clytia hemisphaericaexon
TCONS_00026326-exon-sc0000569-1491911889:18559..18950TCONS_00026326-exon-sc0000569-1491911889:18559..18950Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000569supercontigsc0000569:18559..24129 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.322703	0	0.199491	0	2.02921e-05	1.28887	1.29295	0.389816	0	0	0	1.1564	0	0	0	1.55404	0.293813	2.70651	0.598126	8.04652	6.31914	1.0611	3.11614	0	0	18.5745	31.9988	22.0505	14.1249
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026326 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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