TCONS_00026324 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026324
Unique NameTCONS_00026324
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length654

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026324 ID=TCONS_00026324|Name=TCONS_00026324|organism=Clytia hemisphaerica|type=transcript|length=654bp
AGGTATGTCAATGGAAACACCTGCCATGACTTCTTTTGCTACAAATTCAA
CAATTTCTGGTAACAATCGAGTTTTAACCTCAAAACATAGTGGaGCAAGA
TCAGTGCCACGATCAATAAGTACACCTGGAGCAGGCAAAAACAACATGCT
TTTGATAGCTATTGCTGAAGGAAGAGGGCTAGCTAAAGGAGAAATTGGAC
TTACAAGTTTAGACTTCAAAGCTTCTGAAATGGTTCTTTCACAGTTTTCA
GATAATGCAACTTATGTGAAAGTATTGACCAAAATTCAAGTGCTGCAACC
AAATGAGATAATTATGCCTACAACGGCTTGTGAAAACGGGAATATGTCTC
CATTATTTGAAGCTATATCTCAACAAAATCCACATATTAATTTAACAACT
GTCCAAcgaaaatatttcaatgaaacTAAAGGCTTAGAATGTATCAAGGA
TGTATGTGTTCCAGAATTTCAAACAGTTGAAATGGATGTTCAGAACAAAT
ATTATTGCCTGGCTACTACTGCAGCGTTAGTGAAGTATACAGAGTTTGTT
TACAACATGGTATTAGCTGCCAAATCATTGAAAGTTCTTTTCAAAGGTGG
TGAGAAGACAATGTTGATAGGTAAGTTTTCTTTAATTGCAGTAGGGAGTG
TCCC
Run BLAST on NCBI

transcript from alignment at sc0000569:4020..10795-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026324 ID=TCONS_00026324|Name=TCONS_00026324|organism=Clytia hemisphaerica|type=transcript|length=6776bp|location=Sequence derived from alignment at sc0000569:4020..10795- (Clytia hemisphaerica)
AGGTATGTCAATGGAAACACCTGCCATGACTTCTTTTGCTACAAATTCAA
CAATTTCTGGTAACAATCGAGTTTTAACCTCAAAACATAGTGGGTAAGAT
TTCATATCTGATCTTTACATTTTTTAACTTATTTCTTAAGACAATCCAAT
AGGAAATTTTGCGCTGTTTTCAATCCCAGTTTAGCTGTTTACGTCCAAAA
TGATATAGAGTAAGCTGTAGACCTGAACGTACTATTTTGCTTTTTTGTTA
AAGTTTTTAATTTAAGGGATAACTCTCATTCCTTGCCACTGGACTGACAA
AATTATTAACTCGGATTGTATCAATACACCTTTTCGACCGTAGCCGCAAA
TTGCCGTGCGGGCATTTTTTACCACCCTAAAACCATCCCAGTCTTTTTTT
CGCACTTAAAGGCAATAAAAAAAAGTGTAAAAAAAGGATTGAATCGAGTT
TAGGGTGGCAAATTAAATAATAAAGTGGCACGCGCTTGACCGCGCGACTA
CGGTCGAAAAGGTTTATATTTAATAACTATAAGATCACAGATATATTTGT
AATGATTTGGCTTGAAGTTAAGAACTGTTTTAGAGGCTGCTCTTTACAGA
TAACTACTTATCGGTTCGATAGGCTTTAGTATGAATTTCTTCGGATTATT
CTAGCTCACTAAAGTCGAGTCGCTGAGTAACTTAAAAGTGACTACCTATC
TGTTCGATAGGCTTTAATATGAATTTCTTCGGATTATCGTAGCTCACTAA
AGTCGAGTCTCTGAGTGACTTAAAAGCTATCAAAGTATGGTTACCCTGAT
CGATAGTTATCAATTACTCTCTAAGACTATCAAAAAGGTGTAATATTGGT
AGTAAAAATTGGTCACTGTATGAGTTTTTCTTTTCATTTCTTCAGAGCAA
GATCAGTGCCACGATCAATAAGTACACCTGGAGCAGGCAAAAACAACATG
CTTTTGATAGGTAGAAAAGCTTTCATAATTACAATTAGGTGGATTAAGTG
ATGTCTGTCTCAAAGATAATGCGGACACTTTTCTGTGATGTTGGTCATTT
TTGATCACTTTAGGCCTACTTCAAAGGGCTGTAACTTTTCATCCAAGTAA
GATACTAAAAATCTGAACACATGTTTGAAATAAGTAAGGCTCAAATATTC
TAAAAATCTTCATGTCATTATTTTTAAATCAGTAGAACAAATCTTAATTT
TTTCATCTTCATTTTTCAATTTTTCTTAAATCTTTCATCCTTTAGATTAT
TATCCTTGGAAATACCTTTCCAATGGTGCATAACTTTATAACTCAGCATC
CAAGCTTGTACATAACGTTGATTTATCGTTTGAACAATGTTCATAACGTC
CATATAACGTCTGGTGAACGTTGAATCAACGTTGTGTGTCAGCTGGGATA
AAAAGGTGCTGAGAAAAGGTCAAATTAAAGTATTCACGTACTTTTGAGAC
AGACTCTAATTTGTATGATTTATTCTGTAATTCTAAGAAACCAATGAACA
AAGCTGGTTCAATATTGTTTCCTTTAACTTTTTGACAGCATCTGTGTTTT
CTCTATAGTGTATTTAATTATAAACCTCTACTTACTTGAAAAATCGGCCA
AGCACTCGTGGAAATATTTCTTTCTCTTTTGTAGCTATTGCTGAAGGAAG
AGGGCTAGCTAAAGGAGAAATTGGACTTACAAGTTTAGACTTCAAAGCTT
CTGAAATGGTTCTTTCACAGGTATGAAAATATTGCATCATTAATATTGAT
ATTATATTGATATTATTTANTTTGTCAAGAATAACTCTATCGTTCGCCGT
CATAGTGTGTGTTCTCTAAAGGTCCAAAAGCAAATGTCTAATTTTTTGAA
AATAACAATTTTAGAGCTAATCAAATTATCAATTTTAGCAGCTATCTTTG
GGAATGAGATCTATTGGAAGCCAAGGCTACTGGGCTAAAATCAGACTGAC
AAGTAAAAAAATCTCTCCTTTTAGGTATGTCAATGGAAACACCTGCCATG
ACTTCTTTTGCTACAAATTCAACAATTTCTGGTAACAATCGAGTTTTAAC
CTCAAAACATAGTGGGTAAGATTTCATATCTGATCTTTACATTTTTTAAC
TTATTTCTTAAGACAATCCAATAGGAAATTTTGCGCTGTTTTCAATCCCA
GTTTAGCTGTTTACGTCCAAAATGATATAGAGTAAGCTGTAGACCTGAAC
GTACTATTTTGCTTTTTTGTTAAAGTTTTTAATTTAAGGGATAACTCTCA
TTCCTTGCCACTGGACTGACAAAATTATTAACTCGGATTGTATCAATACA
CCTTTTCGACCGTAGCCGCAAATTGCCGTGCGGGCATTTTTTACCACCCT
AAAACCATCCCAGTCTTTTTTTCGCACTTAAAGGCAATAGAAAAAAGTTA
GTGAATCGAGTTTAGGGTGGCAAATTAAAATATAATAAAGTGGCACGCGC
TTGACCGCGCGACTACGGTCGAAAAGGTGTATATTTAATAACTATAAGAT
CACAGATATATTTGTAATGATTTGGCTTGAAGTTAAGAACTGTTTTAGAG
GCTGCTCTTTACAGATAACTACTTATCGGTTCGATAGGCTTTAGTATGAA
TTTCTTCGGATTATTCTAGCTCACTAAAGTCGAGTCGCTGAGTAACTTAA
AAGTGACTACCTATCTGTTCGATAGGCTTTAATATGAATTTCTTCGGATT
ATCGTAGCTCACTAAAGTCGAGTCTCTGAGTGACTTAAAAGCTATCAAAG
TATGGTTACCCTGATCGATAGTTATAAATTACTTTCTAAGACTATCAAAA
AGGTGTGATGTTGGCAGAGTGGGTCACTGTAGAGTTTTCTCTTTTCATTT
CTTCAGAGCAAGATCTGTGCCACGATCAATAAGTACACCTGGAGCAGGCA
AAAACAACATGCTTTTGATAGGTAGAAAAGCTTTCATAATTACAATTAGG
TGGATTAAGTGATGTCTGTCTCAAAGATAATGTGGACACTTTTCTGTGAT
GTTGGTCATTTTTGTTGTTCTTGGTCATTTTTGATCACTTTAGGCCTACT
TCAAAGGGCTGTAACTTTTCATCCAAGTAAGATACTAAAAATCTGAACAC
ATGTTTGAAATAAGTAAGGCTCAAATATTCTAAAAATCTTCATGTCATTA
TTTTTAAATCAGTAGAACAAATCTTAATTTTTTCATCTTCATTTTTCAAT
TTTTCTTAAATCTTTCATCCTTTAGATTATTATCCTTGGAAATACCTTTC
CAATGGTGCATAGCTTTATAACTCAGCATCCAAGCTTGTACATAACGTTG
ATTTATCGTTTGACCAATGTTCATAACGTCCATATAACGTCAGGTGAACG
TTGAATCAACGTTGTGTGTCAGCTGGGATAAAAAGGTGCTGAGAAAAGTT
CAAACTAAAGTTTTCACGTACTTTTGAGACAGACTTTATAAGTTTGTATG
ATTTATTCTGTAATTCTAAGAAACCAATGAACAAAGCTGGTTCAATATTG
TTTCCTTTAACTTTTTGACAGCATCTGTGTTTTCTTTATAGTGTATTTAA
TTATAAGCCTCTACTTACTTGAAAAATCGGCCAAGCACTCGTGGAAATAT
TTCTTTCTCTTTTGTAGCTATTGCTGAAGGAAGAGGGCTAGCTAAAGGAG
AAATTGGACTTACAAGTTTAGACTTCAAAGCTTCTGAAATGGTTCTTTCA
CAGGTATGAAAATATTGCATCATTAATATTGATATTATATTGATATTATT
TAGCTCGACGTAAAGTTAGACAAAATCCATAATTTACAAATAAACACCCC
TTCTCACAGACCCACTGGAACCTTTTCCCGCTGGAAAAATTCAATTGACC
AAAATATACTGGCCAGTGAAAAAATTATATTCTGATTTTTGTTCCCACTG
AAAATAATCAGATAATCAAATCCTCACTGAAAAATCTTTTGCTTTTCTTT
CCGATTTATTGAGCAGCAATCTGGCTTCATACTATTTAAAATCTATTTTA
CGTTGGGCTCTGTAATCTTGTAAAAAGCAACAGCTACATTCGGCTAATTC
GGCTAAAATTTTCTTTACAGTTTTCAGATAATGCAACTTATGTGAAAGTA
TTGACCAAAATTCAAGTGCTGCAACCAAATGAGGTAGATTGAGTTTTTCT
TTATTTCATGATATATACTATCTTCTTCACCCATAATGCCTATTCAGAAC
CAAAATATTACCAAAATAGTTCTAGTGCTTGAATTTCTAATTGGATGAAT
TTTTGACAAAACTATTCCATTTCTTTTCTTAGATAATTATGCCTACAACG
GCTTGTGAAAACGGGAATATGTCTCCATTATTTGAAGCTATATCTCAACA
AAATCCACATATTAATTTAACAACTGTCCAACGAAAATATTTCAATGAAA
CTAAAGGTTTGTAAAGCAAAGTCATTTCTTCAATTTGCTGAGCGGTGTCT
GACTTTTATGAACTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAAGCAAC
AGCTACATTCGGCTAATTCGGCTAAAATTTTCTTTACAGTTTTCAGATAA
TGCAACTTATGTGAAAGTATTGACCAAAATTCAAGTGCTGCAACCAAATG
AGGTAGATTGAGTTTTTCTTTATTTCATGATATATACTATCTTCTTCACC
CATAATGCCTATTCAGAACCAAAATATTACCAAAATAGTTCTAGTGCTTG
AATTTCTAATTGGATGAATTTTTGACAAAACTATTCCATTTCTTTTCTTA
GATAATTATGCCTACAACGGCTTGTGAAAACGGGAATATGTCTCCATTAT
TTGAAGCTATATCTCAACAAAATCCACATATTAATTTAACAACTGTCCAA
CGAAAATATTTCAATGAAACTAAAGGTTTGTAAAGCAAAGTCATTTCTTC
AATTTGCTGAGCGGTGTCTGACTTTTATGAACTGTGCTTTTTATTCCTTT
TGGCACTAAATAAATAAATGGACAAAAGCGATATACGGTTCCAAGGCTTT
AACATGTTCAATTTTAAATATGTACGATCAATTTTATGTTGACCTTTTGT
TTAATGTTTTTTGAGGTAAAAATTCCTACTGTTTCAATATATTTTATCAT
AATTCCTCTCTTAATTTTGATTTTTTCTTTGAAGGCTTAGAATGTATCAA
GGATGTATGTGTTCCAGAATTTCAAACAGTTGAAATGGATGTTCAGAACA
AGTAAAATTTTCTATTATTCTTATGAGGGCATAGTATTTTCATTAACATT
CAGTGTCCCGAAAAAAAATAAAAAGAAATACCTTATTACACGGAATGTAA
TTAACACGAATTAAGAAATTTCGTGTTAATTAAAACCCCTTTAATTAAAA
CCAGCCGTGGTGTCCTTGAAAAAGCAAATAAAATTTGTGTTAATTTTTTG
CTTGTTAATTCCAAGGCCGTTGAATACTTGTCTAGTAATATTCGTGTAAT
AATGTAGTTTGACCCATAAGGCCGATAACGTTGCGCCTGATTCAAACTTG
ATACTTGAAATGATACGAAGGAGAATCTTTTGAGAGTACCCATAAAGAAA
GCTCAATCAGTCATTGGCATGTATATCTCAAATTCTGAATAATGTTTGCA
AATAATGGCTGAAAACTAGGCTTGATTATTAAACAAATAGTTTGAACAAG
GATTGACGTAAAATAAAGTTTGTTTCCTTATCTTTTTAGATATTATTGCC
TGGCTACTACTGCAGTAAGGATATTTCTTATGGAATTCTTTTTTCTATTC
CGGGTTAGAGTTTAGGATCCAGTATCTTAATCCATAGCCCAAAACATTTT
ACATATTTGAAAGTTGTAAACACCGTGACCCCTAAAATTAATGTACCAAC
TTTATAAAAACAATCCACTATTCCTGGGTTCGGTATCTGGATTCTGTTCC
CCTGCTAATTTTTCTCTAGATGAAATAAACTTTTCAGCCTCATTTGATGG
GAATATTCGAAATGGAATAATTCGAAATATTTCTAAAATACGCCCCCATG
CAAGTTTAGGTTGTAAACACTTGTTAAGACTCTACGCTTCACATCAGATA
ATTTTAAAACGAACGGATTTTATAGTCCGACATGTTTAATTGTTTAAAGA
CACTTTATTTTCATTGTTTCTGATGGTGAAAAGGAAAAGGTTTGTACTAG
AAAAGTCGTCAATGGTTCATAGGAAAATGGGCGGGACTATAAAAAACCTA
TTTATTCTTGTAAATTGATCGAGCTTCTTCTCTTTTGTTTTTCAGGCGTT
AGTGAAGTATACAGAGTTTGTTTACAACATGGTATTAGCTGCCAAATCAT
TGAAAGTTCTTTTCAAAGGTGGTGAGAAGACAATGTTGATAGGTAAGTTT
TCTTTAATTGCAGTAGGGAGTGTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014790XLOC_014790Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026324-exon-sc0000569-1575043694:10703..10795TCONS_00026324-exon-sc0000569-1575043694:10703..10795Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1575043694:9836..9900TCONS_00026324-exon-sc0000569-1575043694:9836..9900Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1575043694:7093..7178TCONS_00026324-exon-sc0000569-1575043694:7093..7178Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1575043694:6663..6725TCONS_00026324-exon-sc0000569-1575043694:6663..6725Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1575043694:5521..5644TCONS_00026324-exon-sc0000569-1575043694:5521..5644Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1575043694:5195..5261TCONS_00026324-exon-sc0000569-1575043694:5195..5261Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1575043694:4682..4706TCONS_00026324-exon-sc0000569-1575043694:4682..4706Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1575043694:4020..4150TCONS_00026324-exon-sc0000569-1575043694:4020..4150Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1510915933:10703..10795TCONS_00026324-exon-sc0000569-1510915933:10703..10795Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1510915933:9836..9900TCONS_00026324-exon-sc0000569-1510915933:9836..9900Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1510915933:7093..7178TCONS_00026324-exon-sc0000569-1510915933:7093..7178Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1510915933:6663..6725TCONS_00026324-exon-sc0000569-1510915933:6663..6725Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1510915933:5521..5644TCONS_00026324-exon-sc0000569-1510915933:5521..5644Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1510915933:5195..5261TCONS_00026324-exon-sc0000569-1510915933:5195..5261Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1510915933:4682..4706TCONS_00026324-exon-sc0000569-1510915933:4682..4706Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1510915933:4020..4150TCONS_00026324-exon-sc0000569-1510915933:4020..4150Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1491911889:10703..10795TCONS_00026324-exon-sc0000569-1491911889:10703..10795Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1491911889:9836..9900TCONS_00026324-exon-sc0000569-1491911889:9836..9900Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1491911889:7093..7178TCONS_00026324-exon-sc0000569-1491911889:7093..7178Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1491911889:6663..6725TCONS_00026324-exon-sc0000569-1491911889:6663..6725Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1491911889:5521..5644TCONS_00026324-exon-sc0000569-1491911889:5521..5644Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1491911889:5195..5261TCONS_00026324-exon-sc0000569-1491911889:5195..5261Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1491911889:4682..4706TCONS_00026324-exon-sc0000569-1491911889:4682..4706Clytia hemisphaericaexon
TCONS_00026324-exon-sc0000569-1491911889:4020..4150TCONS_00026324-exon-sc0000569-1491911889:4020..4150Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000569supercontigsc0000569:4020..10795 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.26734	10.6548	8.15879	8.47721	1.69163	0.283671	5.12555	4.11967	2.93369	1.076	1.30994	2.40682	0.642807	0	0.878352	2.27848	1.32178	0.0059354	0	0.545216	2.50235	1.75526	1.67804	1.82781	0	2.87361	0.58407	1.86196	2.30031	1.55708
Blast
[Close]
BLAST of TCONS_00026324 vs. Swiss-Prot (Human)
Match: MSH4 (MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=1 SV=2)

HSP 1 Score: 196.438 bits (498), Expect = 2.227e-57
Identity = 90/161 (55.90%), Postives = 122/161 (75.78%), Query Frame = 2 
Query:  149 LLIAIAEGRGLAKGEIGLTSLDFKASEMVLSQFSDNATYVKVLTKIQVLQPNEIIMPTTACENGNMSPLFEAISQQNPHINLTTVQRKYFNETKGLECIKDVCVPEFQTVEMDVQNKYYCLATTAALVKYTEFVYNMVLAAKSLKVLFKGGEKTMLIGKFS 631
            +++A+ EGRGLA+GEIG+ S+D K  +++LSQF+DN TY KV+TK+++L P EIIM  TAC  GN + LF  I++   ++N TT+QRKYFNETKGLE I+ +C+ EF TV M+VQ+KYYCLA  AAL+KY EF+ N V A KSLK+ F+G E+T +I   S
Sbjct:  156 VIVAVVEGRGLARGEIGMASIDLKNPQIILSQFADNTTYAKVITKLKILSPLEIIMSNTACAVGNSTKLFTLITENFKNVNFTTIQRKYFNETKGLEYIEQLCIAEFSTVLMEVQSKYYCLAAVAALLKYVEFIQNSVYAPKSLKICFQGSEQTAMIDSSS 316
The following BLAST results are available for this feature:
BLAST of TCONS_00026324 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSH42.227e-5755.90MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=... [more]
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