TCONS_00026323 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026323
Unique NameTCONS_00026323
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length547

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026323 ID=TCONS_00026323|Name=TCONS_00026323|organism=Clytia hemisphaerica|type=transcript|length=547bp
CACGATCAATAAGTACACCTGGAGCAGGCAAAAACAACATGCTTTTGATA
GCTATTGCTGAAGGAAGAGGGCTAGCTAAAGGAGAAATTGGACTTACAAG
TTTAGACTTCAAAGCTTCTGAAATGGTTCTTTCACAGTTTTCAGATAATG
CAACTTATGTGAAAGTATTGACCAAAATTCAAGTGCTGCAACCAAATGAG
ATAATTATGCCTACAACGGCTTGTGAAAACGGGAATATGTCTCCATTATT
TGAAGCTATATCTCAACAAAATCCACATATTAATTTAACAACTGTCCAAc
gaaaatatttcaatgaaacTAAAGGCTTAGAATGTATCAAGGATGTATGT
GTTCCAGAATTTCAAACAGTTGAAATGGATGTTCAGAACAAATATTATTG
CCTGGCTACTACTGCAGCGTTAGTGAAGTATACAGAGTTTGTTTACAACA
TGGTATTAGCTGCCAAATCATTGAAAGTTCTTTTCAAAGGTGGTGAGAAG
ACAATGTTGATAGGTAAGTTTTCTTTAATTGCAGTAGGGAGTGTCCC
Run BLAST on NCBI

transcript from alignment at sc0000569:4020..7925-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026323 ID=TCONS_00026323|Name=TCONS_00026323|organism=Clytia hemisphaerica|type=transcript|length=3906bp|location=Sequence derived from alignment at sc0000569:4020..7925- (Clytia hemisphaerica)
CACGATCAATAAGTACACCTGGAGCAGGCAAAAACAACATGCTTTTGATA
GGTAGAAAAGCTTTCATAATTACAATTAGGTGGATTAAGTGATGTCTGTC
TCAAAGATAATGTGGACACTTTTCTGTGATGTTGGTCATTTTTGTTGTTC
TTGGTCATTTTTGATCACTTTAGGCCTACTTCAAAGGGCTGTAACTTTTC
ATCCAAGTAAGATACTAAAAATCTGAACACATGTTTGAAATAAGTAAGGC
TCAAATATTCTAAAAATCTTCATGTCATTATTTTTAAATCAGTAGAACAA
ATCTTAATTTTTTCATCTTCATTTTTCAATTTTTCTTAAATCTTTCATCC
TTTAGATTATTATCCTTGGAAATACCTTTCCAATGGTGCATAGCTTTATA
ACTCAGCATCCAAGCTTGTACATAACGTTGATTTATCGTTTGACCAATGT
TCATAACGTCCATATAACGTCAGGTGAACGTTGAATCAACGTTGTGTGTC
AGCTGGGATAAAAAGGTGCTGAGAAAAGTTCAAACTAAAGTTTTCACGTA
CTTTTGAGACAGACTTTATAAGTTTGTATGATTTATTCTGTAATTCTAAG
AAACCAATGAACAAAGCTGGTTCAATATTGTTTCCTTTAACTTTTTGACA
GCATCTGTGTTTTCTTTATAGTGTATTTAATTATAAGCCTCTACTTACTT
GAAAAATCGGCCAAGCACTCGTGGAAATATTTCTTTCTCTTTTGTAGCTA
TTGCTGAAGGAAGAGGGCTAGCTAAAGGAGAAATTGGACTTACAAGTTTA
GACTTCAAAGCTTCTGAAATGGTTCTTTCACAGGTATGAAAATATTGCAT
CATTAATATTGATATTATATTGATATTATTTAGCTCGACGTAAAGTTAGA
CAAAATCCATAATTTACAAATAAACACCCCTTCTCACAGACCCACTGGAA
CCTTTTCCCGCTGGAAAAATTCAATTGACCAAAATATACTGGCCAGTGAA
AAAATTATATTCTGATTTTTGTTCCCACTGAAAATAATCAGATAATCAAA
TCCTCACTGAAAAATCTTTTGCTTTTCTTTCCGATTTATTGAGCAGCAAT
CTGGCTTCATACTATTTAAAATCTATTTTACGTTGGGCTCTGTAATCTTG
TAAAAAGCAACAGCTACATTCGGCTAATTCGGCTAAAATTTTCTTTACAG
TTTTCAGATAATGCAACTTATGTGAAAGTATTGACCAAAATTCAAGTGCT
GCAACCAAATGAGGTAGATTGAGTTTTTCTTTATTTCATGATATATACTA
TCTTCTTCACCCATAATGCCTATTCAGAACCAAAATATTACCAAAATAGT
TCTAGTGCTTGAATTTCTAATTGGATGAATTTTTGACAAAACTATTCCAT
TTCTTTTCTTAGATAATTATGCCTACAACGGCTTGTGAAAACGGGAATAT
GTCTCCATTATTTGAAGCTATATCTCAACAAAATCCACATATTAATTTAA
CAACTGTCCAACGAAAATATTTCAATGAAACTAAAGGTTTGTAAAGCAAA
GTCATTTCTTCAATTTGCTGAGCGGTGTCTGACTTTTATGAACTGGGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTAAAAAGCAACAGCTACATTCGGCTAATTCG
GCTAAAATTTTCTTTACAGTTTTCAGATAATGCAACTTATGTGAAAGTAT
TGACCAAAATTCAAGTGCTGCAACCAAATGAGGTAGATTGAGTTTTTCTT
TATTTCATGATATATACTATCTTCTTCACCCATAATGCCTATTCAGAACC
AAAATATTACCAAAATAGTTCTAGTGCTTGAATTTCTAATTGGATGAATT
TTTGACAAAACTATTCCATTTCTTTTCTTAGATAATTATGCCTACAACGG
CTTGTGAAAACGGGAATATGTCTCCATTATTTGAAGCTATATCTCAACAA
AATCCACATATTAATTTAACAACTGTCCAACGAAAATATTTCAATGAAAC
TAAAGGTTTGTAAAGCAAAGTCATTTCTTCAATTTGCTGAGCGGTGTCTG
ACTTTTATGAACTGTGCTTTTTATTCCTTTTGGCACTAAATAAATAAATG
GACAAAAGCGATATACGGTTCCAAGGCTTTAACATGTTCAATTTTAAATA
TGTACGATCAATTTTATGTTGACCTTTTGTTTAATGTTTTTTGAGGTAAA
AATTCCTACTGTTTCAATATATTTTATCATAATTCCTCTCTTAATTTTGA
TTTTTTCTTTGAAGGCTTAGAATGTATCAAGGATGTATGTGTTCCAGAAT
TTCAAACAGTTGAAATGGATGTTCAGAACAAGTAAAATTTTCTATTATTC
TTATGAGGGCATAGTATTTTCATTAACATTCAGTGTCCCGAAAAAAAATA
AAAAGAAATACCTTATTACACGGAATGTAATTAACACGAATTAAGAAATT
TCGTGTTAATTAAAACCCCTTTAATTAAAACCAGCCGTGGTGTCCTTGAA
AAAGCAAATAAAATTTGTGTTAATTTTTTGCTTGTTAATTCCAAGGCCGT
TGAATACTTGTCTAGTAATATTCGTGTAATAATGTAGTTTGACCCATAAG
GCCGATAACGTTGCGCCTGATTCAAACTTGATACTTGAAATGATACGAAG
GAGAATCTTTTGAGAGTACCCATAAAGAAAGCTCAATCAGTCATTGGCAT
GTATATCTCAAATTCTGAATAATGTTTGCAAATAATGGCTGAAAACTAGG
CTTGATTATTAAACAAATAGTTTGAACAAGGATTGACGTAAAATAAAGTT
TGTTTCCTTATCTTTTTAGATATTATTGCCTGGCTACTACTGCAGTAAGG
ATATTTCTTATGGAATTCTTTTTTCTATTCCGGGTTAGAGTTTAGGATCC
AGTATCTTAATCCATAGCCCAAAACATTTTACATATTTGAAAGTTGTAAA
CACCGTGACCCCTAAAATTAATGTACCAACTTTATAAAAACAATCCACTA
TTCCTGGGTTCGGTATCTGGATTCTGTTCCCCTGCTAATTTTTCTCTAGA
TGAAATAAACTTTTCAGCCTCATTTGATGGGAATATTCGAAATGGAATAA
TTCGAAATATTTCTAAAATACGCCCCCATGCAAGTTTAGGTTGTAAACAC
TTGTTAAGACTCTACGCTTCACATCAGATAATTTTAAAACGAACGGATTT
TATAGTCCGACATGTTTAATTGTTTAAAGACACTTTATTTTCATTGTTTC
TGATGGTGAAAAGGAAAAGGTTTGTACTAGAAAAGTCGTCAATGGTTCAT
AGGAAAATGGGCGGGACTATAAAAAACCTATTTATTCTTGTAAATTGATC
GAGCTTCTTCTCTTTTGTTTTTCAGGCGTTAGTGAAGTATACAGAGTTTG
TTTACAACATGGTATTAGCTGCCAAATCATTGAAAGTTCTTTTCAAAGGT
GGTGAGAAGACAATGTTGATAGGTAAGTTTTCTTTAATTGCAGTAGGGAG
TGTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014790XLOC_014790Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026323-exon-sc0000569-1575043694:7875..7925TCONS_00026323-exon-sc0000569-1575043694:7875..7925Clytia hemisphaericaexon
TCONS_00026323-exon-sc0000569-1575043694:7093..7178TCONS_00026323-exon-sc0000569-1575043694:7093..7178Clytia hemisphaericaexon
TCONS_00026323-exon-sc0000569-1575043694:5794..5856TCONS_00026323-exon-sc0000569-1575043694:5794..5856Clytia hemisphaericaexon
TCONS_00026323-exon-sc0000569-1575043694:5521..5644TCONS_00026323-exon-sc0000569-1575043694:5521..5644Clytia hemisphaericaexon
TCONS_00026323-exon-sc0000569-1575043694:5195..5261TCONS_00026323-exon-sc0000569-1575043694:5195..5261Clytia hemisphaericaexon
TCONS_00026323-exon-sc0000569-1575043694:4682..4706TCONS_00026323-exon-sc0000569-1575043694:4682..4706Clytia hemisphaericaexon
TCONS_00026323-exon-sc0000569-1575043694:4020..4150TCONS_00026323-exon-sc0000569-1575043694:4020..4150Clytia hemisphaericaexon
TCONS_00026323-exon-sc0000569-1510915933:7875..7925TCONS_00026323-exon-sc0000569-1510915933:7875..7925Clytia hemisphaericaexon
TCONS_00026323-exon-sc0000569-1510915933:7093..7178TCONS_00026323-exon-sc0000569-1510915933:7093..7178Clytia hemisphaericaexon
TCONS_00026323-exon-sc0000569-1510915933:5794..5856TCONS_00026323-exon-sc0000569-1510915933:5794..5856Clytia hemisphaericaexon
TCONS_00026323-exon-sc0000569-1510915933:5521..5644TCONS_00026323-exon-sc0000569-1510915933:5521..5644Clytia hemisphaericaexon
TCONS_00026323-exon-sc0000569-1510915933:5195..5261TCONS_00026323-exon-sc0000569-1510915933:5195..5261Clytia hemisphaericaexon
TCONS_00026323-exon-sc0000569-1510915933:4682..4706TCONS_00026323-exon-sc0000569-1510915933:4682..4706Clytia hemisphaericaexon
TCONS_00026323-exon-sc0000569-1510915933:4020..4150TCONS_00026323-exon-sc0000569-1510915933:4020..4150Clytia hemisphaericaexon
TCONS_00026323-exon-sc0000569-1491911889:7875..7925TCONS_00026323-exon-sc0000569-1491911889:7875..7925Clytia hemisphaericaexon
TCONS_00026323-exon-sc0000569-1491911889:7093..7178TCONS_00026323-exon-sc0000569-1491911889:7093..7178Clytia hemisphaericaexon
TCONS_00026323-exon-sc0000569-1491911889:5794..5856TCONS_00026323-exon-sc0000569-1491911889:5794..5856Clytia hemisphaericaexon
TCONS_00026323-exon-sc0000569-1491911889:5521..5644TCONS_00026323-exon-sc0000569-1491911889:5521..5644Clytia hemisphaericaexon
TCONS_00026323-exon-sc0000569-1491911889:5195..5261TCONS_00026323-exon-sc0000569-1491911889:5195..5261Clytia hemisphaericaexon
TCONS_00026323-exon-sc0000569-1491911889:4682..4706TCONS_00026323-exon-sc0000569-1491911889:4682..4706Clytia hemisphaericaexon
TCONS_00026323-exon-sc0000569-1491911889:4020..4150TCONS_00026323-exon-sc0000569-1491911889:4020..4150Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000569supercontigsc0000569:4020..7925 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.133385	0	2.06524	0.481975	0.122367	0.179266	0.000756263	5.97345e-06	0	0	0	3.08255e-08	0	0.534534	0	0	0.928613	0.0750282	0	0.119479	0	0.734181	0.86719	0.790949	0	3.41184	1.75334	0.144989	0.0160446	0
Blast
[Close]
BLAST of TCONS_00026323 vs. Swiss-Prot (Human)
Match: MSH4 (MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=1 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 2.002e-57
Identity = 90/161 (55.90%), Postives = 122/161 (75.78%), Query Frame = 3 
Query:   42 LLIAIAEGRGLAKGEIGLTSLDFKASEMVLSQFSDNATYVKVLTKIQVLQPNEIIMPTTACENGNMSPLFEAISQQNPHINLTTVQRKYFNETKGLECIKDVCVPEFQTVEMDVQNKYYCLATTAALVKYTEFVYNMVLAAKSLKVLFKGGEKTMLIGKFS 524
            +++A+ EGRGLA+GEIG+ S+D K  +++LSQF+DN TY KV+TK+++L P EIIM  TAC  GN + LF  I++   ++N TT+QRKYFNETKGLE I+ +C+ EF TV M+VQ+KYYCLA  AAL+KY EF+ N V A KSLK+ F+G E+T +I   S
Sbjct:  156 VIVAVVEGRGLARGEIGMASIDLKNPQIILSQFADNTTYAKVITKLKILSPLEIIMSNTACAVGNSTKLFTLITENFKNVNFTTIQRKYFNETKGLEYIEQLCIAEFSTVLMEVQSKYYCLAAVAALLKYVEFIQNSVYAPKSLKICFQGSEQTAMIDSSS 316
The following BLAST results are available for this feature:
BLAST of TCONS_00026323 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSH42.002e-5755.90MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=... [more]
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