TCONS_00026321 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026321
Unique NameTCONS_00026321
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length857

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026321 ID=TCONS_00026321|Name=TCONS_00026321|organism=Clytia hemisphaerica|type=transcript|length=857bp
TAGGTATGTCAATGGAAACACCTGCCATGACTTCTTTTGCTACAAATTCA
ACAATTTCTGGTAACAATCGAGTTTTAACCTCAAAACATAGTGGaGCAAG
ATCAGTGCCACGATCAATAAGTACACCTGGAGCAGGCAAAAACAACATGC
TTTTGATAGCTATTGCTGAAGGAAGAGGGCTAGCTAAAGGAGAAATTGGA
CTTACAAGTTTAGACTTCAAAGCTTCTGAAATGGTTCTTTCACAGTTTTC
AGATAATGCAACTTATGTGAAAGTATTGACCAAAATTCAAGTGCTGCAAC
CAAATGAGATAATTATGCCTACAACGGCTTGTGAAAACGGGAATATGTCT
CCATTATTTGAAGCTATATCTCAACAAAATCCACATATTAATTTAACAAC
TGTCCAAcgaaaatatttcaatgaaacTAAAGGCTTAGAATGTATCAAGG
ATGTATGTGTTCCAGAATTTCAAACAGTTGAAATGGATGTTCAGAACAAA
TATTATTGCCTGGCTACTACTGCAGCGTTAGTGAAGTATACAGAGTTTGT
TTACAACATGGTATTAGCTGCCAAATCATTGAAAGTTCTTTTCAAAGGTG
GTGAGAAGACAATGTTGATAGATGTACTTGAAAGGTGTTCTGTGCCTCTT
GGCACTGTATCAAGTCCAATGTTATATCAAGCATGAAGAAGGACGAGGAC
CGATGTACAAGCTAAGTGCTGTTAAAGACACCTTCTTGGAAAGATATGGT
GTCTCTTGGGATAGACCGTCATTTGGTCAAAACCTTATTGGAAGACATCG
TCAATATCCTGTCAAAAGAACCCTCATCCAATTCGAAAACCTCCCAGCTA
GTGTCTG
Run BLAST on NCBI

protein sequence of TCONS_00026321-protein

>TCONS_00026321-protein ID=TCONS_00026321-protein|Name=TCONS_00026321-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
GMSMETPAMTSFATNSTISGNNRVLTSKHSGARSVPRSISTPGAGKNNML
LIAIAEGRGLAKGEIGLTSLDFKASEMVLSQFSDNATYVKVLTKIQVLQP
NEIIMPTTACENGNMSPLFEAISQQNPHINLTTVQRKYFNETKGLECIKD
VCVPEFQTVEMDVQNKYYCLATTAALVKYTEFVYNMVLAAKSLKVLFKGG
EKTMLIDVLERCSVPLGTVSSPMLYQA
Run BLAST on NCBI

transcript from alignment at sc0000569:27..10796-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026321 ID=TCONS_00026321|Name=TCONS_00026321|organism=Clytia hemisphaerica|type=transcript|length=10770bp|location=Sequence derived from alignment at sc0000569:27..10796- (Clytia hemisphaerica)
TAGGTATGTCAATGGAAACACCTGCCATGACTTCTTTTGCTACAAATTCA
ACAATTTCTGGTAACAATCGAGTTTTAACCTCAAAACATAGTGGGTAAGA
TTTCATATCTGATCTTTACATTTTTTAACTTATTTCTTAAGACAATCCAA
TAGGAAATTTTGCGCTGTTTTCAATCCCAGTTTAGCTGTTTACGTCCAAA
ATGATATAGAGTAAGCTGTAGACCTGAACGTACTATTTTGCTTTTTTGTT
AAAGTTTTTAATTTAAGGGATAACTCTCATTCCTTGCCACTGGACTGACA
AAATTATTAACTCGGATTGTATCAATACACCTTTTCGACCGTAGCCGCAA
ATTGCCGTGCGGGCATTTTTTACCACCCTAAAACCATCCCAGTCTTTTTT
TCGCACTTAAAGGCAATAAAAAAAAGTGTAAAAAAAGGATTGAATCGAGT
TTAGGGTGGCAAATTAAATAATAAAGTGGCACGCGCTTGACCGCGCGACT
ACGGTCGAAAAGGTTTATATTTAATAACTATAAGATCACAGATATATTTG
TAATGATTTGGCTTGAAGTTAAGAACTGTTTTAGAGGCTGCTCTTTACAG
ATAACTACTTATCGGTTCGATAGGCTTTAGTATGAATTTCTTCGGATTAT
TCTAGCTCACTAAAGTCGAGTCGCTGAGTAACTTAAAAGTGACTACCTAT
CTGTTCGATAGGCTTTAATATGAATTTCTTCGGATTATCGTAGCTCACTA
AAGTCGAGTCTCTGAGTGACTTAAAAGCTATCAAAGTATGGTTACCCTGA
TCGATAGTTATCAATTACTCTCTAAGACTATCAAAAAGGTGTAATATTGG
TAGTAAAAATTGGTCACTGTATGAGTTTTTCTTTTCATTTCTTCAGAGCA
AGATCAGTGCCACGATCAATAAGTACACCTGGAGCAGGCAAAAACAACAT
GCTTTTGATAGGTAGAAAAGCTTTCATAATTACAATTAGGTGGATTAAGT
GATGTCTGTCTCAAAGATAATGCGGACACTTTTCTGTGATGTTGGTCATT
TTTGATCACTTTAGGCCTACTTCAAAGGGCTGTAACTTTTCATCCAAGTA
AGATACTAAAAATCTGAACACATGTTTGAAATAAGTAAGGCTCAAATATT
CTAAAAATCTTCATGTCATTATTTTTAAATCAGTAGAACAAATCTTAATT
TTTTCATCTTCATTTTTCAATTTTTCTTAAATCTTTCATCCTTTAGATTA
TTATCCTTGGAAATACCTTTCCAATGGTGCATAACTTTATAACTCAGCAT
CCAAGCTTGTACATAACGTTGATTTATCGTTTGAACAATGTTCATAACGT
CCATATAACGTCTGGTGAACGTTGAATCAACGTTGTGTGTCAGCTGGGAT
AAAAAGGTGCTGAGAAAAGGTCAAATTAAAGTATTCACGTACTTTTGAGA
CAGACTCTAATTTGTATGATTTATTCTGTAATTCTAAGAAACCAATGAAC
AAAGCTGGTTCAATATTGTTTCCTTTAACTTTTTGACAGCATCTGTGTTT
TCTCTATAGTGTATTTAATTATAAACCTCTACTTACTTGAAAAATCGGCC
AAGCACTCGTGGAAATATTTCTTTCTCTTTTGTAGCTATTGCTGAAGGAA
GAGGGCTAGCTAAAGGAGAAATTGGACTTACAAGTTTAGACTTCAAAGCT
TCTGAAATGGTTCTTTCACAGGTATGAAAATATTGCATCATTAATATTGA
TATTATATTGATATTATTTANTTTGTCAAGAATAACTCTATCGTTCGCCG
TCATAGTGTGTGTTCTCTAAAGGTCCAAAAGCAAATGTCTAATTTTTTGA
AAATAACAATTTTAGAGCTAATCAAATTATCAATTTTAGCAGCTATCTTT
GGGAATGAGATCTATTGGAAGCCAAGGCTACTGGGCTAAAATCAGACTGA
CAAGTAAAAAAATCTCTCCTTTTAGGTATGTCAATGGAAACACCTGCCAT
GACTTCTTTTGCTACAAATTCAACAATTTCTGGTAACAATCGAGTTTTAA
CCTCAAAACATAGTGGGTAAGATTTCATATCTGATCTTTACATTTTTTAA
CTTATTTCTTAAGACAATCCAATAGGAAATTTTGCGCTGTTTTCAATCCC
AGTTTAGCTGTTTACGTCCAAAATGATATAGAGTAAGCTGTAGACCTGAA
CGTACTATTTTGCTTTTTTGTTAAAGTTTTTAATTTAAGGGATAACTCTC
ATTCCTTGCCACTGGACTGACAAAATTATTAACTCGGATTGTATCAATAC
ACCTTTTCGACCGTAGCCGCAAATTGCCGTGCGGGCATTTTTTACCACCC
TAAAACCATCCCAGTCTTTTTTTCGCACTTAAAGGCAATAGAAAAAAGTT
AGTGAATCGAGTTTAGGGTGGCAAATTAAAATATAATAAAGTGGCACGCG
CTTGACCGCGCGACTACGGTCGAAAAGGTGTATATTTAATAACTATAAGA
TCACAGATATATTTGTAATGATTTGGCTTGAAGTTAAGAACTGTTTTAGA
GGCTGCTCTTTACAGATAACTACTTATCGGTTCGATAGGCTTTAGTATGA
ATTTCTTCGGATTATTCTAGCTCACTAAAGTCGAGTCGCTGAGTAACTTA
AAAGTGACTACCTATCTGTTCGATAGGCTTTAATATGAATTTCTTCGGAT
TATCGTAGCTCACTAAAGTCGAGTCTCTGAGTGACTTAAAAGCTATCAAA
GTATGGTTACCCTGATCGATAGTTATAAATTACTTTCTAAGACTATCAAA
AAGGTGTGATGTTGGCAGAGTGGGTCACTGTAGAGTTTTCTCTTTTCATT
TCTTCAGAGCAAGATCTGTGCCACGATCAATAAGTACACCTGGAGCAGGC
AAAAACAACATGCTTTTGATAGGTAGAAAAGCTTTCATAATTACAATTAG
GTGGATTAAGTGATGTCTGTCTCAAAGATAATGTGGACACTTTTCTGTGA
TGTTGGTCATTTTTGTTGTTCTTGGTCATTTTTGATCACTTTAGGCCTAC
TTCAAAGGGCTGTAACTTTTCATCCAAGTAAGATACTAAAAATCTGAACA
CATGTTTGAAATAAGTAAGGCTCAAATATTCTAAAAATCTTCATGTCATT
ATTTTTAAATCAGTAGAACAAATCTTAATTTTTTCATCTTCATTTTTCAA
TTTTTCTTAAATCTTTCATCCTTTAGATTATTATCCTTGGAAATACCTTT
CCAATGGTGCATAGCTTTATAACTCAGCATCCAAGCTTGTACATAACGTT
GATTTATCGTTTGACCAATGTTCATAACGTCCATATAACGTCAGGTGAAC
GTTGAATCAACGTTGTGTGTCAGCTGGGATAAAAAGGTGCTGAGAAAAGT
TCAAACTAAAGTTTTCACGTACTTTTGAGACAGACTTTATAAGTTTGTAT
GATTTATTCTGTAATTCTAAGAAACCAATGAACAAAGCTGGTTCAATATT
GTTTCCTTTAACTTTTTGACAGCATCTGTGTTTTCTTTATAGTGTATTTA
ATTATAAGCCTCTACTTACTTGAAAAATCGGCCAAGCACTCGTGGAAATA
TTTCTTTCTCTTTTGTAGCTATTGCTGAAGGAAGAGGGCTAGCTAAAGGA
GAAATTGGACTTACAAGTTTAGACTTCAAAGCTTCTGAAATGGTTCTTTC
ACAGGTATGAAAATATTGCATCATTAATATTGATATTATATTGATATTAT
TTAGCTCGACGTAAAGTTAGACAAAATCCATAATTTACAAATAAACACCC
CTTCTCACAGACCCACTGGAACCTTTTCCCGCTGGAAAAATTCAATTGAC
CAAAATATACTGGCCAGTGAAAAAATTATATTCTGATTTTTGTTCCCACT
GAAAATAATCAGATAATCAAATCCTCACTGAAAAATCTTTTGCTTTTCTT
TCCGATTTATTGAGCAGCAATCTGGCTTCATACTATTTAAAATCTATTTT
ACGTTGGGCTCTGTAATCTTGTAAAAAGCAACAGCTACATTCGGCTAATT
CGGCTAAAATTTTCTTTACAGTTTTCAGATAATGCAACTTATGTGAAAGT
ATTGACCAAAATTCAAGTGCTGCAACCAAATGAGGTAGATTGAGTTTTTC
TTTATTTCATGATATATACTATCTTCTTCACCCATAATGCCTATTCAGAA
CCAAAATATTACCAAAATAGTTCTAGTGCTTGAATTTCTAATTGGATGAA
TTTTTGACAAAACTATTCCATTTCTTTTCTTAGATAATTATGCCTACAAC
GGCTTGTGAAAACGGGAATATGTCTCCATTATTTGAAGCTATATCTCAAC
AAAATCCACATATTAATTTAACAACTGTCCAACGAAAATATTTCAATGAA
ACTAAAGGTTTGTAAAGCAAAGTCATTTCTTCAATTTGCTGAGCGGTGTC
TGACTTTTATGAACTGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAAAGCAA
CAGCTACATTCGGCTAATTCGGCTAAAATTTTCTTTACAGTTTTCAGATA
ATGCAACTTATGTGAAAGTATTGACCAAAATTCAAGTGCTGCAACCAAAT
GAGGTAGATTGAGTTTTTCTTTATTTCATGATATATACTATCTTCTTCAC
CCATAATGCCTATTCAGAACCAAAATATTACCAAAATAGTTCTAGTGCTT
GAATTTCTAATTGGATGAATTTTTGACAAAACTATTCCATTTCTTTTCTT
AGATAATTATGCCTACAACGGCTTGTGAAAACGGGAATATGTCTCCATTA
TTTGAAGCTATATCTCAACAAAATCCACATATTAATTTAACAACTGTCCA
ACGAAAATATTTCAATGAAACTAAAGGTTTGTAAAGCAAAGTCATTTCTT
CAATTTGCTGAGCGGTGTCTGACTTTTATGAACTGTGCTTTTTATTCCTT
TTGGCACTAAATAAATAAATGGACAAAAGCGATATACGGTTCCAAGGCTT
TAACATGTTCAATTTTAAATATGTACGATCAATTTTATGTTGACCTTTTG
TTTAATGTTTTTTGAGGTAAAAATTCCTACTGTTTCAATATATTTTATCA
TAATTCCTCTCTTAATTTTGATTTTTTCTTTGAAGGCTTAGAATGTATCA
AGGATGTATGTGTTCCAGAATTTCAAACAGTTGAAATGGATGTTCAGAAC
AAGTAAAATTTTCTATTATTCTTATGAGGGCATAGTATTTTCATTAACAT
TCAGTGTCCCGAAAAAAAATAAAAAGAAATACCTTATTACACGGAATGTA
ATTAACACGAATTAAGAAATTTCGTGTTAATTAAAACCCCTTTAATTAAA
ACCAGCCGTGGTGTCCTTGAAAAAGCAAATAAAATTTGTGTTAATTTTTT
GCTTGTTAATTCCAAGGCCGTTGAATACTTGTCTAGTAATATTCGTGTAA
TAATGTAGTTTGACCCATAAGGCCGATAACGTTGCGCCTGATTCAAACTT
GATACTTGAAATGATACGAAGGAGAATCTTTTGAGAGTACCCATAAAGAA
AGCTCAATCAGTCATTGGCATGTATATCTCAAATTCTGAATAATGTTTGC
AAATAATGGCTGAAAACTAGGCTTGATTATTAAACAAATAGTTTGAACAA
GGATTGACGTAAAATAAAGTTTGTTTCCTTATCTTTTTAGATATTATTGC
CTGGCTACTACTGCAGTAAGGATATTTCTTATGGAATTCTTTTTTCTATT
CCGGGTTAGAGTTTAGGATCCAGTATCTTAATCCATAGCCCAAAACATTT
TACATATTTGAAAGTTGTAAACACCGTGACCCCTAAAATTAATGTACCAA
CTTTATAAAAACAATCCACTATTCCTGGGTTCGGTATCTGGATTCTGTTC
CCCTGCTAATTTTTCTCTAGATGAAATAAACTTTTCAGCCTCATTTGATG
GGAATATTCGAAATGGAATAATTCGAAATATTTCTAAAATACGCCCCCAT
GCAAGTTTAGGTTGTAAACACTTGTTAAGACTCTACGCTTCACATCAGAT
AATTTTAAAACGAACGGATTTTATAGTCCGACATGTTTAATTGTTTAAAG
ACACTTTATTTTCATTGTTTCTGATGGTGAAAAGGAAAAGGTTTGTACTA
GAAAAGTCGTCAATGGTTCATAGGAAAATGGGCGGGACTATAAAAAACCT
ATTTATTCTTGTAAATTGATCGAGCTTCTTCTCTTTTGTTTTTCAGGCGT
TAGTGAAGTATACAGAGTTTGTTTACAACATGGTATTAGCTGCCAAATCA
TTGAAAGTTCTTTTCAAAGGTGGTGAGAAGACAATGTTGATAGGTAAGTT
TTCTTTAATTGCAGTAGGGAGTGTCCCAAAGGTTCGATAGCTTCTTACCA
AAAGGTAATGAAAGTGCTACTCTCTCCCTGGATCGCCCCACTTACCCTTG
ATCCTTCTTTTTAATTGGCTTTCACTAAACAGATAGACATGAAGTCTTTG
AGGTCCTTGGTTTTACCGACCATGGGTTGAACCCATGACCTTTCATATCA
TACTCCATTTTAGAGTGGTCTGATCCAGAGTACTATAATTTCTAAAAAAA
TATTTAAGAGGATGAAGCTGAAAAACGAAGAAATGAACTTTTTTTAAGAC
TCCTGGTTCCAGCAAAATAGTTATTTTTCCATTAAGTTCTTGCATCGAGC
TAGCTGGGAGACCCGACTTCTCTGTCTATGTGGTTTCAAAAAAATATCAA
AGTATAGACAGTAGTAGCCGGGAATTATACAAGATGCAAGAATTAATCGC
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTTTGCAGCCGTCATTACGGCTGTTTTATTT
CGTTTATATTTGTCACTTTTCTATATAGACTGTAATGGCCTGTTCCATTT
GATATACATACAGGTGGTAAAACAAACCTTTCCAAGCCAAAAATTTCTTG
AAAATAATATATTTAGATACCCCCTGGTGGAGTAGTGGTATGGTGGTCAT
CGCTCTTGACTCCCGTCTGAGAGGCCCGAGTTCGATGCTCACCATGGTAC
TTTGATTCACTTGGCAAGTGAATTTATCTTCGCCCGGGTCAACCCATGCC
ATGTGAGAGGAATTGGGTACCACTACTCTGATACAAGAGTGTGGGTAGAT
GTGCCGTGCATTGTGACGTGCCGCGACACTTGTTACAGGTTCGAGTGTCA
AGGTATACGCCAAGACTCGGCAGCTCGCACCTGTAGAGTCGCAATGCGTG
GCAGCGCAGTGTTTCCTACTCTCTCGTAGGTAAGAAACATTCCGAGATAT
GGGAGGGCTTAATATCAATCAAAACAATCCCCCCTGGAAAATGGTAAAAT
TTGAAAATAAAAAGACCTTGGAAAAATTCTTCTTCGTACCTTAGAGTGGG
AGTGGACAAACTAAAACCAGTTTTATACCCCCTGGAGGAATTTGAATATT
ATTTACCTCCTGGAAAATTAAATTAGGTCCCTGGAAATATAAACTTTTCG
TTTCACCCCTGGTAAAATAAAAATAATTTTCCTTAGACCACTCGGATCAC
TCCTTGGGAAATTTCATCAACCCCATGTATAAATATTAAACGGAATGTTC
CTGTCTAAAGCGGGCTATCTGTCATTTTCTTGGATCTTCTGAACGAAGAA
AACAATGTTTATAGTTTATGTTTTCTAGATATTAGAAGCCTATTTCGATT
CCATCTATGACTCCATGTACATGTTTTTTTTATAAGAACAAATTATATAA
GAACATAAGGCTTTGCTGGCCAAAATGTTAAGAACAAGTTAAAAACATTT
TAAGGCTCTGCGGACTCAAAACACCCTATTTCTTCAGATTTCTCTGGAAA
ATGGTCAAAATAAGAACATGTTAAAGAACATTTTTAGGCTTAAAACTCAA
ATAGTTAGGAACATCAGAAGGCTTCAAAAATTTTGGATGTTCTAATAAAA
AAAACATGTATCGGTCACGTACCATTTTCCCACTATTTTCCATTTTTGTT
GTCTTTTGTAATACTTTTAATCACAAGATAAAGAGTGCTCAACCTTAATA
AGTGGATCACTACAGTGACAGTAGAAAAATATCATGTACTAAAAAAAAAA
CATGCATCCTATCCTAATGTTTGTACCTCATTTACGCGATGAGCAGATGC
CAATGCAGCAAAATGGGGTTTTCCAGAAAAATATTTAACCCCAACTGTTG
AGGATATTGATTTTGCCAAGTATCGAACCCTCTGGATATCCACTCTTAAA
AATTAGCTCAACTCCCTGGATATTCTCTCTTATAAAGATGCTTACCCCTG
GATATCCACTCCTTCGTAGATATTTAACCCCCTGGATATCCACTTTTGAA
CAAAATTCGTTAACCCCCTGGATATCCGATATCCTCGACAGGGGGGAACG
GACTATTTCTGGAATAGCTCGATATCCTATGGTTTAAAAAGCCGGACTCA
TCAAAACATTATTCGGAGCTTTTTTCCATTTGTGGTTTGTGAATAGCAAC
TTTTAGTCTTAAGGGAACAAAAAATGCCGCAAAATACATTCGGTGCTAAA
TTGACAGTTTTCTCATTCAGTCCCTCGTGTGCAGGTCAAGCCACACCTGT
TGCTAATCACGAGACAAGAAGAAAAAAAAAACTGTTTCTAAATCTAAGTT
TTTAATCAAGCACACTTCCAAATAGTTGCACATGGAGATAGAAGAAGTAA
TTAACAATTAATAACAATTAAATATTCGTAAAATTTACTAATTACTTAGT
TTCGGCATTTATCACAACTTGTATAAATAGGGATAAAAAATTCAAGAGTT
CACCATCAAACGTTTTCAACCTTCATCAAGTGAAGTGGTTTGGCGAACAA
GAAAAATCTTCAGATTACAATTTAGAACGTAAGTCGTACTGCCAGTTAGT
GATTTAGTTAACCTTTCAAAACATTTAAAATGTCCCTGTTTCAAGTAAAC
GCGCCTCCAAGAAAGAAGGCGTTCATTATTCAAAGAGGGGCGTTTATCGA
AGAGGTGCATTAAAAAGGAGGCGTTCATTCGCAGGGGGTATTTATTCAGA
GTAATGCGATATTTCATACATAGTAAACCAGCGTGTTTTTTTGCGACCCT
AATACTAAATCCTAATCGTTTTCTTTCTTTATAGATGTACTTGAAAGGTG
TTCTGTGCCTCTTGGCACTGTATCAAGTCCAATGTTATATCAAGCATGAA
GAAGGACGAGGACCGATGTACAAGCTAAGTGCTGTTAAAGACACCTTCTT
GGAAAGATATGGTGTCTCTTGGGATAGACCGTCATTTGGTCAAAACCTTA
TTGGAAGACATCGTCAATATCCTGTCAAAAGAACCCTCATCCAATTCGAA
AACCTCCCAGCTAGTGTCTG

Coding sequence (CDS) from alignment at sc0000569:27..10796-

>TCONS_00026321 ID=TCONS_00026321|Name=TCONS_00026321|organism=Clytia hemisphaerica|type=CDS|length=6156bp|location=Sequence derived from alignment at sc0000569:27..10796- (Clytia hemisphaerica)
ATGTACTTGAAAGGTGTTCTGTGCCTCTTGGCACTGTATCAAGTCCAATG
TTATATCAAGCATGAGCGTTAGTGAAGTATACAGAGTTTGTTTACAACAT
GGTATTAGCTGCCAAATCATTGAAAGTTCTTTTCAAAGGTGGTGAGAAGA
CAATGTTGATAGATATTATTGCCTGGCTACTACTGCAGCTTAGAATGTAT
CAAGGATGTATGTGTTCCAGAATTTCAAACAGTTGAAATGGATGTTCAGA
ACAAATAATTATGCCTACAACGGCTTGTGAAAACGGGAATATGTCTCCAT
TATTTGAAGCTATATCTCAACAAAATCCACATATTAATTTAACAACTGTC
CAACGAAAATATTTCAATGAAACTAAAGTTTTCAGATAATGCAACTTATG
TGAAAGTATTGACCAAAATTCAAGTGCTGCAACCAAATGAGCTATTGCTG
AAGGAAGAGGGCTAGCTAAAGGAGAAATTGGACTTACAAGTTTAGACTTC
AAAGCTTCTGAAATGGTTCTTTCACAGAGCAAGATCAGTGCCACGATCAA
TAAGTACACCTGGAGCAGGCAAAAACAACATGCTTTTGATAGGGTATGTC
AATGGAAACACCTGCCATGACTTCTTTTGCTACAAATTCAACAATTTCTG
GTAACAATCGAGTTTTAACCTCAAAACATAGTGGATGTACTTGAAAGGTG
TTCTGTGCCTCTTGGCACTGTATCAAGTCCAATGTTATATCAAGCATGAG
CGTTAGTGAAGTATACAGAGTTTGTTTACAACATGGTATTAGCTGCCAAA
TCATTGAAAGTTCTTTTCAAAGGTGGTGAGAAGACAATGTTGATAGATAT
TATTGCCTGGCTACTACTGCAGCTTAGAATGTATCAAGGATGTATGTGTT
CCAGAATTTCAAACAGTTGAAATGGATGTTCAGAACAAATAATTATGCCT
ACAACGGCTTGTGAAAACGGGAATATGTCTCCATTATTTGAAGCTATATC
TCAACAAAATCCACATATTAATTTAACAACTGTCCAACGAAAATATTTCA
ATGAAACTAAAGTTTTCAGATAATGCAACTTATGTGAAAGTATTGACCAA
AATTCAAGTGCTGCAACCAAATGAGCTATTGCTGAAGGAAGAGGGCTAGC
TAAAGGAGAAATTGGACTTACAAGTTTAGACTTCAAAGCTTCTGAAATGG
TTCTTTCACAGAGCAAGATCAGTGCCACGATCAATAAGTACACCTGGAGC
AGGCAAAAACAACATGCTTTTGATAGGGTATGTCAATGGAAACACCTGCC
ATGACTTCTTTTGCTACAAATTCAACAATTTCTGGTAACAATCGAGTTTT
AACCTCAAAACATAGTGGATGTACTTGAAAGGTGTTCTGTGCCTCTTGGC
ACTGTATCAAGTCCAATGTTATATCAAGCATGAGCGTTAGTGAAGTATAC
AGAGTTTGTTTACAACATGGTATTAGCTGCCAAATCATTGAAAGTTCTTT
TCAAAGGTGGTGAGAAGACAATGTTGATAGATATTATTGCCTGGCTACTA
CTGCAGCTTAGAATGTATCAAGGATGTATGTGTTCCAGAATTTCAAACAG
TTGAAATGGATGTTCAGAACAAATAATTATGCCTACAACGGCTTGTGAAA
ACGGGAATATGTCTCCATTATTTGAAGCTATATCTCAACAAAATCCACAT
ATTAATTTAACAACTGTCCAACGAAAATATTTCAATGAAACTAAAGTTTT
CAGATAATGCAACTTATGTGAAAGTATTGACCAAAATTCAAGTGCTGCAA
CCAAATGAGCTATTGCTGAAGGAAGAGGGCTAGCTAAAGGAGAAATTGGA
CTTACAAGTTTAGACTTCAAAGCTTCTGAAATGGTTCTTTCACAGAGCAA
GATCAGTGCCACGATCAATAAGTACACCTGGAGCAGGCAAAAACAACATG
CTTTTGATAGGGTATGTCAATGGAAACACCTGCCATGACTTCTTTTGCTA
CAAATTCAACAATTTCTGGTAACAATCGAGTTTTAACCTCAAAACATAGT
GGATGTACTTGAAAGGTGTTCTGTGCCTCTTGGCACTGTATCAAGTCCAA
TGTTATATCAAGCATGAGCGTTAGTGAAGTATACAGAGTTTGTTTACAAC
ATGGTATTAGCTGCCAAATCATTGAAAGTTCTTTTCAAAGGTGGTGAGAA
GACAATGTTGATAGATATTATTGCCTGGCTACTACTGCAGCTTAGAATGT
ATCAAGGATGTATGTGTTCCAGAATTTCAAACAGTTGAAATGGATGTTCA
GAACAAATAATTATGCCTACAACGGCTTGTGAAAACGGGAATATGTCTCC
ATTATTTGAAGCTATATCTCAACAAAATCCACATATTAATTTAACAACTG
TCCAACGAAAATATTTCAATGAAACTAAAGTTTTCAGATAATGCAACTTA
TGTGAAAGTATTGACCAAAATTCAAGTGCTGCAACCAAATGAGCTATTGC
TGAAGGAAGAGGGCTAGCTAAAGGAGAAATTGGACTTACAAGTTTAGACT
TCAAAGCTTCTGAAATGGTTCTTTCACAGAGCAAGATCAGTGCCACGATC
AATAAGTACACCTGGAGCAGGCAAAAACAACATGCTTTTGATAGGGTATG
TCAATGGAAACACCTGCCATGACTTCTTTTGCTACAAATTCAACAATTTC
TGGTAACAATCGAGTTTTAACCTCAAAACATAGTGGATGTACTTGAAAGG
TGTTCTGTGCCTCTTGGCACTGTATCAAGTCCAATGTTATATCAAGCATG
AGCGTTAGTGAAGTATACAGAGTTTGTTTACAACATGGTATTAGCTGCCA
AATCATTGAAAGTTCTTTTCAAAGGTGGTGAGAAGACAATGTTGATAGAT
ATTATTGCCTGGCTACTACTGCAGCTTAGAATGTATCAAGGATGTATGTG
TTCCAGAATTTCAAACAGTTGAAATGGATGTTCAGAACAAATAATTATGC
CTACAACGGCTTGTGAAAACGGGAATATGTCTCCATTATTTGAAGCTATA
TCTCAACAAAATCCACATATTAATTTAACAACTGTCCAACGAAAATATTT
CAATGAAACTAAAGTTTTCAGATAATGCAACTTATGTGAAAGTATTGACC
AAAATTCAAGTGCTGCAACCAAATGAGCTATTGCTGAAGGAAGAGGGCTA
GCTAAAGGAGAAATTGGACTTACAAGTTTAGACTTCAAAGCTTCTGAAAT
GGTTCTTTCACAGAGCAAGATCAGTGCCACGATCAATAAGTACACCTGGA
GCAGGCAAAAACAACATGCTTTTGATAGGGTATGTCAATGGAAACACCTG
CCATGACTTCTTTTGCTACAAATTCAACAATTTCTGGTAACAATCGAGTT
TTAACCTCAAAACATAGTGGATGTACTTGAAAGGTGTTCTGTGCCTCTTG
GCACTGTATCAAGTCCAATGTTATATCAAGCATGAGCGTTAGTGAAGTAT
ACAGAGTTTGTTTACAACATGGTATTAGCTGCCAAATCATTGAAAGTTCT
TTTCAAAGGTGGTGAGAAGACAATGTTGATAGATATTATTGCCTGGCTAC
TACTGCAGCTTAGAATGTATCAAGGATGTATGTGTTCCAGAATTTCAAAC
AGTTGAAATGGATGTTCAGAACAAATAATTATGCCTACAACGGCTTGTGA
AAACGGGAATATGTCTCCATTATTTGAAGCTATATCTCAACAAAATCCAC
ATATTAATTTAACAACTGTCCAACGAAAATATTTCAATGAAACTAAAGTT
TTCAGATAATGCAACTTATGTGAAAGTATTGACCAAAATTCAAGTGCTGC
AACCAAATGAGCTATTGCTGAAGGAAGAGGGCTAGCTAAAGGAGAAATTG
GACTTACAAGTTTAGACTTCAAAGCTTCTGAAATGGTTCTTTCACAGAGC
AAGATCAGTGCCACGATCAATAAGTACACCTGGAGCAGGCAAAAACAACA
TGCTTTTGATAGGGTATGTCAATGGAAACACCTGCCATGACTTCTTTTGC
TACAAATTCAACAATTTCTGGTAACAATCGAGTTTTAACCTCAAAACATA
GTGGATGTACTTGAAAGGTGTTCTGTGCCTCTTGGCACTGTATCAAGTCC
AATGTTATATCAAGCATGAGCGTTAGTGAAGTATACAGAGTTTGTTTACA
ACATGGTATTAGCTGCCAAATCATTGAAAGTTCTTTTCAAAGGTGGTGAG
AAGACAATGTTGATAGATATTATTGCCTGGCTACTACTGCAGCTTAGAAT
GTATCAAGGATGTATGTGTTCCAGAATTTCAAACAGTTGAAATGGATGTT
CAGAACAAATAATTATGCCTACAACGGCTTGTGAAAACGGGAATATGTCT
CCATTATTTGAAGCTATATCTCAACAAAATCCACATATTAATTTAACAAC
TGTCCAACGAAAATATTTCAATGAAACTAAAGTTTTCAGATAATGCAACT
TATGTGAAAGTATTGACCAAAATTCAAGTGCTGCAACCAAATGAGCTATT
GCTGAAGGAAGAGGGCTAGCTAAAGGAGAAATTGGACTTACAAGTTTAGA
CTTCAAAGCTTCTGAAATGGTTCTTTCACAGAGCAAGATCAGTGCCACGA
TCAATAAGTACACCTGGAGCAGGCAAAAACAACATGCTTTTGATAGGGTA
TGTCAATGGAAACACCTGCCATGACTTCTTTTGCTACAAATTCAACAATT
TCTGGTAACAATCGAGTTTTAACCTCAAAACATAGTGGATGTACTTGAAA
GGTGTTCTGTGCCTCTTGGCACTGTATCAAGTCCAATGTTATATCAAGCA
TGAGCGTTAGTGAAGTATACAGAGTTTGTTTACAACATGGTATTAGCTGC
CAAATCATTGAAAGTTCTTTTCAAAGGTGGTGAGAAGACAATGTTGATAG
ATATTATTGCCTGGCTACTACTGCAGCTTAGAATGTATCAAGGATGTATG
TGTTCCAGAATTTCAAACAGTTGAAATGGATGTTCAGAACAAATAATTAT
GCCTACAACGGCTTGTGAAAACGGGAATATGTCTCCATTATTTGAAGCTA
TATCTCAACAAAATCCACATATTAATTTAACAACTGTCCAACGAAAATAT
TTCAATGAAACTAAAGTTTTCAGATAATGCAACTTATGTGAAAGTATTGA
CCAAAATTCAAGTGCTGCAACCAAATGAGCTATTGCTGAAGGAAGAGGGC
TAGCTAAAGGAGAAATTGGACTTACAAGTTTAGACTTCAAAGCTTCTGAA
ATGGTTCTTTCACAGAGCAAGATCAGTGCCACGATCAATAAGTACACCTG
GAGCAGGCAAAAACAACATGCTTTTGATAGGGTATGTCAATGGAAACACC
TGCCATGACTTCTTTTGCTACAAATTCAACAATTTCTGGTAACAATCGAG
TTTTAACCTCAAAACATAGTGGATGTACTTGAAAGGTGTTCTGTGCCTCT
TGGCACTGTATCAAGTCCAATGTTATATCAAGCATGAGCGTTAGTGAAGT
ATACAGAGTTTGTTTACAACATGGTATTAGCTGCCAAATCATTGAAAGTT
CTTTTCAAAGGTGGTGAGAAGACAATGTTGATAGATATTATTGCCTGGCT
ACTACTGCAGCTTAGAATGTATCAAGGATGTATGTGTTCCAGAATTTCAA
ACAGTTGAAATGGATGTTCAGAACAAATAATTATGCCTACAACGGCTTGT
GAAAACGGGAATATGTCTCCATTATTTGAAGCTATATCTCAACAAAATCC
ACATATTAATTTAACAACTGTCCAACGAAAATATTTCAATGAAACTAAAG
TTTTCAGATAATGCAACTTATGTGAAAGTATTGACCAAAATTCAAGTGCT
GCAACCAAATGAGCTATTGCTGAAGGAAGAGGGCTAGCTAAAGGAGAAAT
TGGACTTACAAGTTTAGACTTCAAAGCTTCTGAAATGGTTCTTTCACAGA
GCAAGATCAGTGCCACGATCAATAAGTACACCTGGAGCAGGCAAAAACAA
CATGCTTTTGATAGGGTATGTCAATGGAAACACCTGCCATGACTTCTTTT
GCTACAAATTCAACAATTTCTGGTAACAATCGAGTTTTAACCTCAAAACA
TAGTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014790XLOC_014790Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026321-exon-sc0000569-1575043694:10703..10796TCONS_00026321-exon-sc0000569-1575043694:10703..10796Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1575043694:9836..9900TCONS_00026321-exon-sc0000569-1575043694:9836..9900Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1575043694:9076..9161TCONS_00026321-exon-sc0000569-1575043694:9076..9161Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1575043694:5794..5856TCONS_00026321-exon-sc0000569-1575043694:5794..5856Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1575043694:5521..5644TCONS_00026321-exon-sc0000569-1575043694:5521..5644Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1575043694:5195..5261TCONS_00026321-exon-sc0000569-1575043694:5195..5261Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1575043694:4682..4706TCONS_00026321-exon-sc0000569-1575043694:4682..4706Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1575043694:4054..4150TCONS_00026321-exon-sc0000569-1575043694:4054..4150Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1575043694:27..262TCONS_00026321-exon-sc0000569-1575043694:27..262Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1510915933:10703..10796TCONS_00026321-exon-sc0000569-1510915933:10703..10796Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1510915933:9836..9900TCONS_00026321-exon-sc0000569-1510915933:9836..9900Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1510915933:9076..9161TCONS_00026321-exon-sc0000569-1510915933:9076..9161Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1510915933:5794..5856TCONS_00026321-exon-sc0000569-1510915933:5794..5856Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1510915933:5521..5644TCONS_00026321-exon-sc0000569-1510915933:5521..5644Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1510915933:5195..5261TCONS_00026321-exon-sc0000569-1510915933:5195..5261Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1510915933:4682..4706TCONS_00026321-exon-sc0000569-1510915933:4682..4706Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1510915933:4054..4150TCONS_00026321-exon-sc0000569-1510915933:4054..4150Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1510915933:27..262TCONS_00026321-exon-sc0000569-1510915933:27..262Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1491911889:10703..10796TCONS_00026321-exon-sc0000569-1491911889:10703..10796Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1491911889:9836..9900TCONS_00026321-exon-sc0000569-1491911889:9836..9900Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1491911889:9076..9161TCONS_00026321-exon-sc0000569-1491911889:9076..9161Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1491911889:5794..5856TCONS_00026321-exon-sc0000569-1491911889:5794..5856Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1491911889:5521..5644TCONS_00026321-exon-sc0000569-1491911889:5521..5644Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1491911889:5195..5261TCONS_00026321-exon-sc0000569-1491911889:5195..5261Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1491911889:4682..4706TCONS_00026321-exon-sc0000569-1491911889:4682..4706Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1491911889:4054..4150TCONS_00026321-exon-sc0000569-1491911889:4054..4150Clytia hemisphaericaexon
TCONS_00026321-exon-sc0000569-1491911889:27..262TCONS_00026321-exon-sc0000569-1491911889:27..262Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026321-proteinTCONS_00026321-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000569supercontigsc0000569:27..10796 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.43854	2.09774	0.125591	2.30186	0.628489	1.06677e-05	3.9127e-05	6.96411e-06	0.701678	1.47211	6.58954e-05	0.475318	0.598747	0.247781	0.416456	0.584617	0.306126	1.0248	0.3104	6.27868e-06	0.4506	1.06938e-05	0.707883	4.71568e-06	5.7711	3.60782	3.52063e-06	0.511502	0.58189	0.592899
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007860DNA_mmatch_repair_MutS_con_dom
Vocabulary: Molecular Function
TermDefinition
GO:0030983mismatched DNA binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006298mismatch repair
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006298 mismatch repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0030983 mismatched DNA binding
Blast
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BLAST of TCONS_00026321 vs. Swiss-Prot (Human)
Match: MSH4 (MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 2.193e-57
Identity = 90/158 (56.96%), Postives = 122/158 (77.22%), Query Frame = 3 
Query:  150 LLIAIAEGRGLAKGEIGLTSLDFKASEMVLSQFSDNATYVKVLTKIQVLQPNEIIMPTTACENGNMSPLFEAISQQNPHINLTTVQRKYFNETKGLECIKDVCVPEFQTVEMDVQNKYYCLATTAALVKYTEFVYNMVLAAKSLKVLFKGGEKTMLID 623
            +++A+ EGRGLA+GEIG+ S+D K  +++LSQF+DN TY KV+TK+++L P EIIM  TAC  GN + LF  I++   ++N TT+QRKYFNETKGLE I+ +C+ EF TV M+VQ+KYYCLA  AAL+KY EF+ N V A KSLK+ F+G E+T +ID
Sbjct:  156 VIVAVVEGRGLARGEIGMASIDLKNPQIILSQFADNTTYAKVITKLKILSPLEIIMSNTACAVGNSTKLFTLITENFKNVNFTTIQRKYFNETKGLEYIEQLCIAEFSTVLMEVQSKYYCLAAVAALLKYVEFIQNSVYAPKSLKICFQGSEQTAMID 313
The following BLAST results are available for this feature:
BLAST of TCONS_00026321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MSH42.193e-5756.96MutS protein homolog 4 OS=Homo sapiens GN=MSH4 PE=... [more]
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