TCONS_00026304 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026304
Unique NameTCONS_00026304
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length801

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026304 ID=TCONS_00026304|Name=TCONS_00026304|organism=Clytia hemisphaerica|type=transcript|length=801bp
AAGACACTAAAATTTTTTTACTGGTAagttttatcactttttaattAGTT
TTATGGGTTTTAGAATCAAAAATCGAGTTTTTCTATATCAAATTTGACag
tgaaattttatttcataagaCTTTTGTGAGGAAAATGAATAGGCGAAGGA
ATTCTAAGATTACGTAATTAAGAATTTGCTCCAATCAGCTTTCAGGATTT
AAAACGACTTTGTCCAATCAGCTTTTGTTGgcatattttgaaactttttt
cattaatttatcatttttcgaCATTTCTGTGTGTTTCGAGTAGGAAGTAG
AAACGTATGAAAATGTTTGAGAACAGTGTTTTGAGATGGGGCGAGTATTT
TTTCTTAtgatctttcttctttctttttagataacatatcatataaaaaa
tattccGACTTGCCGATAGGATTGTGAATTATGGAAACTGAAAAAACACT
ACCATGGATTCGCAATATGTATTTCAATCTGGTCAATTTACGTCAGTTTA
CTTTTACTGGTTGGAAAACAAATTTAGCAAACCGGATTGATATATTTTGA
GACTTAAAATCAAATGGAATTTTACTCATTTGCTATAGCTGAAGACTGAA
GAAATTGCTTGCTTGACGAAGCTTGACGAATGGAGATCTTGATACCGATG
ATACGAACCAAGTGATAGCAGAGAACTATACAAAACTCATGAGAACTAAC
TGGCAGAAAAGCGTACTAGAATAGAAGTTGCAGTTGTTTGTAAATACTCG
ACGGATATATGAACTGTTCATCTGTTCCTGAAAACTTTGCTTATGTAAGT
N
Run BLAST on NCBI

transcript from alignment at sc0000569:61811..62611+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026304 ID=TCONS_00026304|Name=TCONS_00026304|organism=Clytia hemisphaerica|type=transcript|length=801bp|location=Sequence derived from alignment at sc0000569:61811..62611+ (Clytia hemisphaerica)
AAGACACTAAAATTTTTTTACTGGTAagttttatcactttttaattAGTT
TTATGGGTTTTAGAATCAAAAATCGAGTTTTTCTATATCAAATTTGACag
tgaaattttatttcataagaCTTTTGTGAGGAAAATGAATAGGCGAAGGA
ATTCTAAGATTACGTAATTAAGAATTTGCTCCAATCAGCTTTCAGGATTT
AAAACGACTTTGTCCAATCAGCTTTTGTTGgcatattttgaaactttttt
cattaatttatcatttttcgaCATTTCTGTGTGTTTCGAGTAGGAAGTAG
AAACGTATGAAAATGTTTGAGAACAGTGTTTTGAGATGGGGCGAGTATTT
TTTCTTAtgatctttcttctttctttttagataacatatcatataaaaaa
tattccGACTTGCCGATAGGATTGTGAATTATGGAAACTGAAAAAACACT
ACCATGGATTCGCAATATGTATTTCAATCTGGTCAATTTACGTCAGTTTA
CTTTTACTGGTTGGAAAACAAATTTAGCAAACCGGATTGATATATTTTGA
GACTTAAAATCAAATGGAATTTTACTCATTTGCTATAGCTGAAGACTGAA
GAAATTGCTTGCTTGACGAAGCTTGACGAATGGAGATCTTGATACCGATG
ATACGAACCAAGTGATAGCAGAGAACTATACAAAACTCATGAGAACTAAC
TGGCAGAAAAGCGTACTAGAATAGAAGTTGCAGTTGTTTGTAAATACTCG
ACGGATATATGAACTGTTCATCTGTTCCTGAAAACTTTGCTTATGTAAGT
N
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014783XLOC_014783Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026304-exon-sc0000569-1491911889:61811..62611TCONS_00026304-exon-sc0000569-1491911889:61811..62611Clytia hemisphaericaexon
TCONS_00026304-exon-sc0000569-1510915933:61811..62611TCONS_00026304-exon-sc0000569-1510915933:61811..62611Clytia hemisphaericaexon
TCONS_00026304-exon-sc0000569-1575043694:61811..62611TCONS_00026304-exon-sc0000569-1575043694:61811..62611Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000569supercontigsc0000569:61811..62611 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.369768	0.530048	0.0992811	0	1.66619	0.563177	0.691581	0	1.43428	2.25449	2.78633	2.56428	0.91282	0	0.355831	0.705907	1.58011	1.56845	1.46176	0.305927	1.35015	3.50189	0.946002	0.860053	0	0	0.335444	0	0.504861	0.311004
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026304 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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