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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026301 ID=TCONS_00026301|Name=TCONS_00026301|organism=Clytia hemisphaerica|type=transcript|length=845bpRun BLAST on NCBI transcript from alignment at sc0000569:27855..31327+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00026301 ID=TCONS_00026301|Name=TCONS_00026301|organism=Clytia hemisphaerica|type=transcript|length=3473bp|location=Sequence derived from alignment at sc0000569:27855..31327+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00026301 vs. Swiss-Prot (Human)
Match: Z512B (Zinc finger protein 512B OS=Homo sapiens GN=ZNF512B PE=1 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 9.093e-31 Identity = 63/141 (44.68%), Postives = 102/141 (72.34%), Query Frame = -2
Query: 47 VTKPIDVTE*VNVTKPIGVTK*VNVAKPINVAKPIDVAKPIDLTKPIDVIKSIDVTKSINVTKPINVTKPFNVAKSIDVIE*VNVTKPIDVTKPIDVTKPIYVAKPINVAKPIDVSKPVNVAKPIDVSE*VNVGKPINVAK 469
+++P+ ++ V V+KPIGV+K V + KP+ V+KPI ++KP+ + +P+ V K+I VT+ + VTKP+ V++P V K++ V + + VTK + VTKP+ VTKPI V K + V KP+ V+KPV V++PI VS+ V V +PI +++
Sbjct: 176 ISRPVTISRPVGVSKPIGVSKPVTIGKPVGVSKPIGISKPVSVGRPMPVTKAIPVTRPVPVTKPVTVSRPMPVTKAMPVTKPITVTKSVPVTKPVPVTKPITVTKLVTVTKPVPVTKPVTVSRPIVVSKPVTVSRPIAISR 316 HSP 2 Score: 121.324 bits (303), Expect = 3.374e-30 Identity = 67/166 (40.36%), Postives = 115/166 (69.28%), Query Frame = -2
Query: 290 KSINVTKPINVTKPINVTKSINVAKPINVAKPINVTKPTNVTKPIDVAKSIDVIKPIDVCE*VNVTKSIDVTKPIDVAKPIDVSE*VNVTKSIDGTK*VIITKSIDVTKPIDVTE*VNVTKPIGVTK*VNVAKPINVAKPIDVAKPIDLTKPIDVIKSIDVTKSIN 787
+ + +KP +++P+ +++ + V+KPI V+KP+ + KP V+KPI ++K + V +P+ V + + VT+ + VTKP+ V++P+ V++ + VTK I TK V +TK + VTKPI VT+ V VTKP+ VTK V V++PI V+KP+ V++PI +++ K + +T+S N
Sbjct: 166 RPLPASKPGPISRPVTISRPVGVSKPIGVSKPVTIGKPVGVSKPIGISKPVSVGRPMPVTKAIPVTRPVPVTKPVTVSRPMPVTKAMPVTKPITVTKSVPVTKPVPVTKPITVTKLVTVTKPVPVTKPVTVSRPIVVSKPVTVSRPIAISRHTPPCKMVLLTRSEN 331 HSP 3 Score: 120.553 bits (301), Expect = 5.506e-30 Identity = 64/152 (42.11%), Postives = 105/152 (69.08%), Query Frame = -2
Query: 32 ITKSIDVTKPIDVTE*VNVTKPIGVTK*VNVAKPINVAKPIDVAKPIDLTKPIDVIKSIDVTKSINVTKPINVTKPFNVAKSIDVIE*VNVTKPIDVTKPIDVTKPIYVAKPINVAKPIDVSKPVNVAKPIDVSE*VNVGKPINVAKSINVT 487
+ + + +KP ++ V +++P+GV+K + V+KP+ + KP+ V+KPI ++KP+ V + + VTK+I VT+P+ VTKP V++ + V + + VTKPI VTK + VTKP+ V KPI V K + V+KPV V KP+ VS + V KP+ V++ I ++
Sbjct: 164 MDRPLPASKPGPISRPVTISRPVGVSKPIGVSKPVTIGKPVGVSKPIGISKPVSVGRPMPVTKAIPVTRPVPVTKPVTVSRPMPVTKAMPVTKPITVTKSVPVTKPVPVTKPITVTKLVTVTKPVPVTKPVTVSRPIVVSKPVTVSRPIAIS 315 HSP 4 Score: 120.168 bits (300), Expect = 8.023e-30 Identity = 66/169 (39.05%), Postives = 114/169 (67.46%), Query Frame = -2
Query: 272 NVTKPINVTKPINVTKSINVAKPINVAKPINVTKPTNVTKPIDVAKSIDVIKPIDVCE*VNVTKSIDVTKPIDVAKPIDVSE*VNVTKSIDGTK*VIITKSIDVTKPIDVTE*VNVTKPIGVTK*VNVAKPINVAKPIDVAKPIDLTKPIDVIKSIDVTKSINVTKPIN 778
++ +P+ +KP +++ + +++P+ V+KPI V+KP + KP+ V+K I + KP+ V + VTK+I VT+P+ V KP+ VS + VTK++ TK + +TKS+ VTKP+ VT+ + VTK + VTK V V KP+ V++PI V+KP+ +++PI + + K + +T+ N
Sbjct: 163 HMDRPLPASKPGPISRPVTISRPVGVSKPIGVSKPVTIGKPVGVSKPIGISKPVSVGRPMPVTKAIPVTRPVPVTKPVTVSRPMPVTKAMPVTKPITVTKSVPVTKPVPVTKPITVTKLVTVTKPVPVTKPVTVSRPIVVSKPVTVSRPIAISRHTPPCKMVLLTRSEN 331 HSP 5 Score: 117.857 bits (294), Expect = 4.565e-29 Identity = 64/136 (47.06%), Postives = 98/136 (72.06%), Query Frame = -2
Query: 86 VIITKSIDVTKPIDVTE*VNVTKPIGVTK*VNVAKPINVAKPIDVAKPIDLTKPIDVIKSIDVTKSINVTKPINVTKPFNVAKSIDVIE*VNVTKPIDVTKPIDVTKPIYVAKPINVAKPIDVSKPVNVAKPIDVS 493
V I++ + V+KPI V++ V + KP+GV+K + ++KP++V +P+ V K I +T+P+ V K + V++ + VTK + VTKP V KS+ V + V VTKPI VTK + VTKP+ V KP+ V++PI VSKPV V++PI +S
Sbjct: 180 VTISRPVGVSKPIGVSKPVTIGKPVGVSKPIGISKPVSVGRPMPVTKAIPVTRPVPVTKPVTVSRPMPVTKAMPVTKPITVTKSVPVTKPVPVTKPITVTKLVTVTKPVPVTKPVTVSRPIVVSKPVTVSRPIAIS 315 HSP 6 Score: 116.316 bits (290), Expect = 1.618e-28 Identity = 67/160 (41.88%), Postives = 108/160 (67.50%), Query Frame = -2
Query: 119 NVTKSIDVTKPIDVAKPIDVSE*VNVTKSIDGTK*VIITKSIDVTKPIDVTE*VNVTKPIGVTK*VNVAKPINVAKPIDVAKPIDLTKPIDVIKSIDVTKSINVTKPINVTKPFNVAKSIDVIE*VNVTKPIDVTKPIDVTKPIYVAKPINVAKPIDVSK 598
++ + + +KP +++P+ +S V V+K I +K V I K + V+KPI +++ V+V +P+ VTK + V +P+ V KP+ V++P+ +TK + V K I VTKS+ VTKP+ VTKP V K V VTKP+ VTKP+ V++PI V+KP+ V++PI +S+
Sbjct: 163 HMDRPLPASKPGPISRPVTISRPVGVSKPIGVSKPVTIGKPVGVSKPIGISKPVSVGRPMPVTKAIPVTRPVPVTKPVTVSRPMPVTKAMPVTKPITVTKSVPVTKPVPVTKPITVTKL------VTVTKPVPVTKPVTVSRPIVVSKPVTVSRPIAISR 316 HSP 7 Score: 109.768 bits (273), Expect = 2.750e-26 Identity = 60/151 (39.74%), Postives = 102/151 (67.55%), Query Frame = -2
Query: 245 KPINVTKPTNVTKPIDVAKSIDVIKPIDVCE*VNVTKSIDVTKPIDVAKPIDVSE*VNVTKSIDGTK*VIITKSIDVTKPIDVTE*VNVTKPIGVTK*VNVAKPINVAKPIDVAKPIDLTKPIDVIKSIDVTKSINVTKPINVTKPFNVAK 697
+P+ +KP +++P+ +++ + V KPI V + V + K + V+KPI ++KP+ V + VTK+I T+ V +TK + V++P+ VT+ + VTKPI VTK V V KP+ V KPI V K + +TKP+ V K + V++ I V+KP+ V++P +++
Sbjct: 166 RPLPASKPGPISRPVTISRPVGVSKPIGVSKPVTIGKPVGVSKPIGISKPVSVGRPMPVTKAIPVTRPVPVTKPVTVSRPMPVTKAMPVTKPITVTKSVPVTKPVPVTKPITVTKLVTVTKPVPVTKPVTVSRPIVVSKPVTVSRPIAISR 316 HSP 8 Score: 107.071 bits (266), Expect = 1.920e-25 Identity = 58/144 (40.28%), Postives = 97/144 (67.36%), Query Frame = -2
Query: 5 NVTKPIGVTK*VNVAKPINVAKPIDVAKPIDLTKPIDVIKSIDVTKSINVTKPINVTKPFNVAKSIDVIE*VNVTKPIDVTKPIDVTKPIYVAKPINVAKPIDVSKPVNVAKPIDVSE*VNVGKPINVAKSINVTG*INVPKPI 436
++ +P+ +K +++P+ +++P+ V+KPI ++KP+ + K + V+K I ++KP++V +P V K+I V V VTKP+ V++P+ VTK + V KPI V K + V+KPV V KPI V++ V V KP+ V K + V+ I V KP+
Sbjct: 163 HMDRPLPASKPGPISRPVTISRPVGVSKPIGVSKPVTIGKPVGVSKPIGISKPVSVGRPMPVTKAIPVTRPVPVTKPVTVSRPMPVTKAMPVTKPITVTKSVPVTKPVPVTKPITVTKLVTVTKPVPVTKPVTVSRPIVVSKPV 306 HSP 9 Score: 106.686 bits (265), Expect = 2.855e-25 Identity = 71/204 (34.80%), Postives = 117/204 (57.35%), Query Frame = -2
Query: 104 KPINVAKPINVTKPTNVTKPIDVAKSIDVIKPIDVCE*VNVTKSIDVTKPIDVAKPIDVSE*VNVTKSIDGTK*VIITKSIDVTKPIDVTE*VNVTKPIGVTK*VNVAKPINVAKPIDVAKPIDLTKPIDVIKSIDVTKSINVTKPINVTKPFNVAKSIDVIE*VNVTKPIDVTKPIDVTKPIYVAKPINVAKPIDVSKPVNVA 715
+P+ +KP +++P +++P+ V+K I V KP+ + + V V+K I ++KP+ V +P+ V TK+I VT+P+ VT+ V V++P+ VTK + V KPI V K + V KP+ +TKP I VTK + VTKP+ VTKP V V++PI V+KP+ V++PI +++ K + +++ N A
Sbjct: 166 RPLPASKPGPISRPVTISRPVGVSKPIGVSKPVTIGKPVGVSKPIGISKPVSVGRPMPV------------------TKAIPVTRPVPVTKPVTVSRPMPVTKAMPVTKPITVTKSVPVTKPVPVTKP------ITVTKLVTVTKPVPVTKP------------VTVSRPIVVSKPVTVSRPIAISRHTPPCKMVLLTRSENKA 333 HSP 10 Score: 96.2857 bits (238), Expect = 7.143e-22 Identity = 60/170 (35.29%), Postives = 99/170 (58.24%), Query Frame = -2
Query: 335 AEPIDFIESIDVTD*VTTTKSINVTKPINVTKPINVTKSINVAKPINVAKPINVTKPTNVTKPIDVAKSIDVIKPIDVCE*VNVTKSIDVTKPIDVAKPIDVSE*VNVTKSIDGTK*VIITKSIDVTKPIDVTE*VNVTKPIGVTK*VNVAKPINVAKPIDVAKPIDLTK 844
+ P+ + V+ + +K + + KP+ V+KPI ++K ++V +P+ V K I VT+P VTKP+ V++ + V K + V + + VTKS+ VTKP+ V KPI V TK + VTKP+ VT+ V V++PI V+K V V++PI +++ K + LT+
Sbjct: 177 SRPVTISRPVGVSKPIGVSKPVTIGKPVGVSKPIGISKPVSVGRPMPVTKAIPVTRPVPVTKPVTVSRPMPVTKAMPVTKPITVTKSVPVTKPVPVTKPITV------------------TKLVTVTKPVPVTKPVTVSRPIVVSKPVTVSRPIAISRHTPPCKMVLLTR 328 HSP 11 Score: 79.7221 bits (195), Expect = 1.295e-16 Identity = 49/123 (39.84%), Postives = 77/123 (62.60%), Query Frame = -2
Query: 476 AEPIDFIESIDVTD*VTTTKSINVTKPINVTKPINVTKSINVAKPINVAKPINVTKPTNVTKPIDVAKSIDVIKPIDVCE*VNVTKSIDVTKPIDVAKPIDVSE*VNVTKSIDGTK*VIITKS 844
++PI + + V + TK+I VT+P+ VTKP+ V++ + V K + V KPI VTK VTKP+ V K I V K + V + V VTK + V++PI V+KP+ VS + +++ K V++T+S
Sbjct: 207 SKPIGISKPVSVGRPMPVTKAIPVTRPVPVTKPVTVSRPMPVTKAMPVTKPITVTKSVPVTKPVPVTKPITVTKLVTVTKPVPVTKPVTVSRPIVVSKPVTVSRPIAISRHTPPCKMVLLTRS 329 The following BLAST results are available for this feature:
BLAST of TCONS_00026301 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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