TCONS_00026297 (transcript) - C. hemisphaerica

Overview
NameTCONS_00026297
Unique NameTCONS_00026297
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length480

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00026297 ID=TCONS_00026297|Name=TCONS_00026297|organism=Clytia hemisphaerica|type=transcript|length=480bp
ATGCATCTCTCGACATTTCTCGACGCGAGtgcttggaaaatctgaaaatc
caaGTGACTCAAAAGGAAAGAACAATGTCTATGCCTATAGATAACAGTCG
CTAGAACATATCAGATTTTCTCATGTTTTAGATCGCACATAGGTCAATAA
ACAGGGTTGACATGATACGACACTTTTGAAATGGAATATTTTGTCAAAAC
CAGAGGAATTTTATACACAGTCACGTATAGTTTGGATCAACTTACACTGA
ACCATGGAACACGTTCACCAAAAATTATACAAGTCCCAGATTTCTTATCT
GACCCCTCCTACATAAACTCACATCCGTCAACAAACCTGTCACCATCATC
GGGATAAATCTTGCTTGAAaggttttgttaaaaaaaaagaatgatatcgt
ttgcttactcatcaattttaattcacaagctttttcacattggattgaca
tgattgtggagcaagattggtcagaaagag
Run BLAST on NCBI

transcript from alignment at sc0000566:148674..149153

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00026297 ID=TCONS_00026297|Name=TCONS_00026297|organism=Clytia hemisphaerica|type=transcript|length=480bp|location=Sequence derived from alignment at sc0000566:148674..149153 (Clytia hemisphaerica)
ctctttctgaccaatcttgctccacaatcatgtcaatccaatgtgaaaaa
gcttgtgaattaaaattgatgagtaagcaaacgatatcattctttttttt
taacaaaacctTTCAAGCAAGATTTATCCCGATGATGGTGACAGGTTTGT
TGACGGATGTGAGTTTATGTAGGAGGGGTCAGATAAGAAATCTGGGACTT
GTATAATTTTTGGTGAACGTGTTCCATGGTTCAGTGTAAGTTGATCCAAA
CTATACGTGACTGTGTATAAAATTCCTCTGGTTTTGACAAAATATTCCAT
TTCAAAAGTGTCGTATCATGTCAACCCTGTTTATTGACCTATGTGCGATC
TAAAACATGAGAAAATCTGATATGTTCTAGCGACTGTTATCTATAGGCAT
AGACATTGTTCTTTCCTTTTGAGTCACttggattttcagattttccaagc
aCTCGCGTCGAGAAATGTCGAGAGATGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014778XLOC_014778Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00026297-exon-sc0000566-1491911889:148674..149153TCONS_00026297-exon-sc0000566-1491911889:148674..149153Clytia hemisphaericaexon
TCONS_00026297-exon-sc0000566-1510915933:148674..149153TCONS_00026297-exon-sc0000566-1510915933:148674..149153Clytia hemisphaericaexon
TCONS_00026297-exon-sc0000566-1575043694:148674..149153TCONS_00026297-exon-sc0000566-1575043694:148674..149153Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000566supercontigsc0000566:148674..149153 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.268171	0	0	0.449314	0.354978	0.558572	0.169035	0	0	0	0	0	0	0	0	0.560923	0	0.503951	0	0.146655	0	0	0	0	0	0	0.189212	0.391459	0.895388	1.36859
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00026297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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