|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00026290 ID=TCONS_00026290|Name=TCONS_00026290|organism=Clytia hemisphaerica|type=transcript|length=1150bp
gaaaacaatttgttttttttctcaataattttaaaaattgaattggcTGC
AGCCGCCTCtttaacaaaatttagaatATGGATTCATCGAATTTGTTAAA
TTTAAGAACCTACATCCTTATATTAACCTTCATACTACTCCTGTTGAAAC
AGATCAATTCATTAAAGGACTTCACAGAGAAAAATGCAATCGATCTAATC
AACAAACATCGTATAACACATCTCGGCAATGGAGCTAGCTCTTTACAGAA
AGACTTTACCCTgactcaaaaagctaagaagcTTGTGGAGAAAGCAATGA
AAAACAAAGGATTTGACAAAGATGGATATGCTGGTGTGAATACGTATCAA
GTTTGTGCAACATTTGGTGCACATGTTACATCTAGACAAGTTGTGGACAC
GTGGTACAACGAAGTATGTGATGTTGATTTTGAAACAAATGATTTCAAAC
CAGGTACTGAAAGTTTCGCTCAACTCGTATGGAAAGATACACAAAGAGTT
GGTCTTGCTAAAGCTACAGGACGTAATAAAAATCAGACGTGTCAATATAT
CGCAGGTTTATTCCGTCCACCTGGAAATATAGATGGTTTCTACGATGAGA
ACGTATTAAAAGGAAAATTCGACGAAAAGTATTGTGATGAGTTgtaaaga
aaatttcgcgaACGTCTTAAATGTTGTTATTTGTTATGAATTCAAATGGA
CAAACTGATGACGTGAAGACCCAGTCGCATACTTAACATATTCGCTGCCG
ATTCAAATATACTCGTATTGGAGTGGTCAAAATTCCGGTAGTACTTCATA
TCAAAATGTATCCTTGCTTCAGAGAACCATGACTTTGATACAGAAACTTT
GCTTACTTTTTTATCgcatttttgaaagtcaaacttCAATGAAATTTCTA
AAGGTCAAATTTTCAACTTCTGTCATGTGAACGTGATAACGAAGTTTGCA
ATATTCTGATAGCACTCAACCTTTTACGTCCATaagttatataaaaaaag
tttcgaAGCATTCGAATGATGTAACATGAAAGTGatacacaaatatattt
ttatatatacAATGCACAAGTCATCGATCGTTGTTATTACTACCAATCAT
GTAGTAAACTTTAattaatacagttgacgctctctaattcgatctttaag Run BLAST on NCBI protein sequence of TCONS_00026290-protein >TCONS_00026290-protein ID=TCONS_00026290-protein|Name=TCONS_00026290-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MDSSNLLNLRTYILILTFILLLLKQINSLKDFTEKNAIDLINKHRITHLG
NGASSLQKDFTLTQKAKKLVEKAMKNKGFDKDGYAGVNTYQVCATFGAHV
TSRQVVDTWYNEVCDVDFETNDFKPGTESFAQLVWKDTQRVGLAKATGRN
KNQTCQYIAGLFRPPGNIDGFYDENVLKGKFDEKYCDEL Run BLAST on NCBI transcript from alignment at sc0000566:205544..207057+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00026290 ID=TCONS_00026290|Name=TCONS_00026290|organism=Clytia hemisphaerica|type=transcript|length=1514bp|location=Sequence derived from alignment at sc0000566:205544..207057+ (Clytia hemisphaerica)
gaaaacaatttgttttttttctcaataattttaaaaattgaattggcTGC
AGCCGCCTCtttaacaaaatttagaatATGGATTCATCGAATTTGTTAAA
TTTAAGAACCTACATCCTTATATTAACCTTCATACTACTCCTGTTGAAAC
AGATCAATTCATTAAAGGACTTCACAGAGAAAAATGCAATCGATCTAATC
AACAAACATCGTATAACACATCTCGGCAATGGAGCTAGCTCTTTACAGAA
AGACTTTACCCTgactcaaaaagctaagaagcTTGTGGAGAAAGCAATGA
AAAACAAAGGATTTGACAAAGATGGATATGCTGGTGTGAATACGTATCAA
GTTTGTGCAACATTTGGTGCACATGTTACATCTAGACAAGTTGTGGACAC
GTGGTAtgatcttctttttttcattttcttctactACTACTAATAACTTA
GCTATGGGGTTTTATCACAGGGGCCGTAGAAAGCATTTTGAGATGGAATG
GAGATGGTTAGAAATCAACACTGGGGAACTAACTTTGCCCAAACTTTGTC
AAAAAATTAGCTATAAATAATCATGTCCAGAATCATACATGAAACCGGTG
AGATTACCAATATTTAGGGGATTATTAGAGGAGAAAGTATTCCTAATACA
TCAACTATGGTTTTAGAATATGATTCTTTTAATTGagctaaaatattgat
tttagGCTGTCTGTGTATTATCGTATTATCAATTTAACTAACAAGCTATT
ACCTCTTTTTTTTCCAGGTACAACGAAGTATGTGATGTTGATTTTGAAAC
AAATGATTTCAAACCAGGTACTGAAAGTTTCGCTCAACTCGTATGGAAAG
ATACACAAAGAGTTGGTCTTGCTAAAGCTACAGGACGTAATAAAAATCAG
ACGTGTCAATATATCGCAGGTTTATTCCGTCCACCTGGAAATATAGATGG
TTTCTACGATGAGAACGTATTAAAAGGAAAATTCGACGAAAAGTATTGTG
ATGAGTTgtaaagaaaatttcgcgaACGTCTTAAATGTTGTTATTTGTTA
TGAATTCAAATGGACAAACTGATGACGTGAAGACCCAGTCGCATACTTAA
CATATTCGCTGCCGATTCAAATATACTCGTATTGGAGTGGTCAAAATTCC
GGTAGTACTTCATATCAAAATGTATCCTTGCTTCAGAGAACCATGACTTT
GATACAGAAACTTTGCTTACTTTTTTATCgcatttttgaaagtcaaactt
CAATGAAATTTCTAAAGGTCAAATTTTCAACTTCTGTCATGTGAACGTGA
TAACGAAGTTTGCAATATTCTGATAGCACTCAACCTTTTACGTCCATaag
ttatataaaaaaagtttcgaAGCATTCGAATGATGTAACATGAAAGTGat
acacaaatatatttttatatatacAATGCACAAGTCATCGATCGTTGTTA
TTACTACCAATCATGTAGTAAACTTTAattaatacagttgacgctctcta
attcgatctttaag Coding sequence (CDS) from alignment at sc0000566:205544..207057+ >TCONS_00026290 ID=TCONS_00026290|Name=TCONS_00026290|organism=Clytia hemisphaerica|type=CDS|length=1140bp|location=Sequence derived from alignment at sc0000566:205544..207057+ (Clytia hemisphaerica)
ATGGATTCATCGAATTTGTTAAATTTAAGAACCTACATCCTTATATTAAC
CTTCATACTACTCCTGTTGAAACAGATCAATTCATTAAAGGACTTCACAG
AGAAAAATGCAATCGATCTAATCAACAAACATCGTATAACACATCTCGGC
AATGGAGCTAGCTCTTTACAGAAAGACTTTACCCTgactcaaaaagctaa
gaagcTTGTGGAGAAAGCAATGAAAAACAAAGGATTTGACAAAGATGGAT
ATGCTGGTGTGAATACGTATCAAGTTTGTGCAACATTTGGTGCACATGTT
ACATCTAGACAAGTTGTGGACACGTGGTACAACGAAGTATGTGATGTTGA
TTTTGAAACAAATGATTTCAAACCAGGTACTGAAAGTTTCGCTCAACTCG
TATGGAAAGATACACAAAGAGTTGGTCTTGCTAAAGCTACAGGACGTAAT
AAAAATCAGACGTGTCAATATATCGCAGGTTTATTCCGTCCACCTGGAAA
TATAGATGGTTTCTACGATGAGAACGTATTAAAAGGAAAATTCGACGAAA
AGTATTGTGATGAGTTgtaaATGGATTCATCGAATTTGTTAAATTTAAGA
ACCTACATCCTTATATTAACCTTCATACTACTCCTGTTGAAACAGATCAA
TTCATTAAAGGACTTCACAGAGAAAAATGCAATCGATCTAATCAACAAAC
ATCGTATAACACATCTCGGCAATGGAGCTAGCTCTTTACAGAAAGACTTT
ACCCTgactcaaaaagctaagaagcTTGTGGAGAAAGCAATGAAAAACAA
AGGATTTGACAAAGATGGATATGCTGGTGTGAATACGTATCAAGTTTGTG
CAACATTTGGTGCACATGTTACATCTAGACAAGTTGTGGACACGTGGTAC
AACGAAGTATGTGATGTTGATTTTGAAACAAATGATTTCAAACCAGGTAC
TGAAAGTTTCGCTCAACTCGTATGGAAAGATACACAAAGAGTTGGTCTTG
CTAAAGCTACAGGACGTAATAAAAATCAGACGTGTCAATATATCGCAGGT
TTATTCCGTCCACCTGGAAATATAGATGGTTTCTACGATGAGAACGTATT
AAAAGGAAAATTCGACGAAAAGTATTGTGATGAGTTgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00026290-exon-sc0000566-1491911889:205544..205946 | TCONS_00026290-exon-sc0000566-1491911889:205544..205946 | Clytia hemisphaerica | exon |
| TCONS_00026290-exon-sc0000566-1510915933:205544..205946 | TCONS_00026290-exon-sc0000566-1510915933:205544..205946 | Clytia hemisphaerica | exon |
| TCONS_00026290-exon-sc0000566-1575043694:205544..205946 | TCONS_00026290-exon-sc0000566-1575043694:205544..205946 | Clytia hemisphaerica | exon |
| TCONS_00026290-exon-sc0000566-1491911889:206311..207057 | TCONS_00026290-exon-sc0000566-1491911889:206311..207057 | Clytia hemisphaerica | exon |
| TCONS_00026290-exon-sc0000566-1510915933:206311..207057 | TCONS_00026290-exon-sc0000566-1510915933:206311..207057 | Clytia hemisphaerica | exon |
| TCONS_00026290-exon-sc0000566-1575043694:206311..207057 | TCONS_00026290-exon-sc0000566-1575043694:206311..207057 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000566 | supercontig | sc0000566:205544..207057 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR014044 | CAP_domain |
Blast
The following BLAST results are available for this feature:
|
